Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8150280.1

Orthogroup ID

OG0002171

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 201

Gene Structure 201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8150280.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ggtcatatgcgaaggcacagaatgatgaacgccgggttttcttcttcggttccttctgcggctgttgttgcttcgaagattcctgtgctgatgaggtcgaatagtaagagggtgatgtgtttggacatggacttgaacttgacgcctttggaaaatgacctgaaggtcttgtttggaaacatggccccaaaagttttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010045 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071289 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

66

Amino Acids

7.32

Weight (kDa)

10.43

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37430 AT3G53600
fragaria_vesca	FvH4_6g14410 FvH4_6g14411
malus_domestica	MD04G1119600.v1.1 MD12G1136900.v1.1
prunus_persica	Prupe.6G249300_v2.0.a1
pyrus_communis	pycom04g10910 pycom12g13140
rosa_chinensis	RchiOBHm_Chr3g0467501 RchiOBHm_Chr3g0467521 RchiOBHm_Chr3g0467531 RchiOBHm_Chr3g0467541
rosa_laevigata	RLG00000024493 RLG00000024494 RLG00000024497 RLG00000024498 RLG00000024500 RLG00000024501
rosa_multiflora	Rmu_co8150280.1_g000001 Rmu_sc0000286.1_g000002 Rmu_sc0000286.1_g000003 Rmu_sc0000286.1_g000005 Rmu_sc0006408.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413620 Rroxscaffold_6G00413630 Rroxscaffold_6G00413640
rosa_rugosa	Rorug03G0087700 Rorug03G0087800 Rorug03G0087900 Rorug03G0087900
rosa_samantha	Rh3AG135700 Rh3AG135800 Rh3BG157300 Rh3BG157400 Rh3BG157500 Rh3BG157600 Rh3CG157400 Rh3CG157500 Rh3DG158300 Rh3DG158400
rosa_wichuraiana	Rw3G012890 Rw3G012900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
AciI	CCGC	1 cut(s)	59
AcuI	CTGAAG	1 cut(s)	182
AcyI	GRCGYC	1 cut(s)	143
AgsI	TTSAA	1 cut(s)	136
AoxI	GGCC	1 cut(s)	183
AspS9I	GGNCC	1 cut(s)	184
AsuC2I	CCSGG	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	124
AsuII	TTCGAA	1 cut(s)	74
BcnI	CCSGG	1 cut(s)	34
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
Bme1390I	CCNGG	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	2 cut(s)	51, 186
BmrFI	CCNGG	1 cut(s)	34
Bpu14I	TTCGAA	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	34
BsaHI	GRCGYC	1 cut(s)	143
BshFI	GGCC	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	33
BsnI	GGCC	1 cut(s)	185
Bsp119I	TTCGAA	1 cut(s)	74
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	1 cut(s)	185
BspLI	GGNNCC	2 cut(s)	51, 186
BspT104I	TTCGAA	1 cut(s)	74
BssNI	GRCGYC	1 cut(s)	143
BstACI	GRCGYC	1 cut(s)	143
BstBI	TTCGAA	1 cut(s)	74
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	184
CseI	GACGC	1 cut(s)	151
CviAII	CATG	2 cut(s)	127, 181
CviJI	RGCY	2 cut(s)	62, 185
CviKI_1	RGCY	2 cut(s)	62, 185
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	182
FaeI	CATG	2 cut(s)	130, 184
FaiI	YATR	4 cut(s)	6, 8, 128, 182
FatI	CATG	2 cut(s)	126, 180
FauNDI	CATATG	1 cut(s)	6
Fnu4HI	GCNGC	1 cut(s)	60
Fsp4HI	GCNGC	1 cut(s)	60
GluI	GCNGC	1 cut(s)	60
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	1 cut(s)	33
HgaI	GACGC	1 cut(s)	151
Hin1I	GRCGYC	1 cut(s)	143
Hin1II	CATG	2 cut(s)	130, 184
HinfI	GANTC	1 cut(s)	79
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	1 cut(s)	124
HpyAV	CCTTC	3 cut(s)	6, 63, 157
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
Hsp92I	GRCGYC	1 cut(s)	143
Hsp92II	CATG	2 cut(s)	130, 184
LpnPI	CCDG	3 cut(s)	46, 96, 173
MboII	GAAGA	3 cut(s)	33, 36, 88
MnlI	CCTC	2 cut(s)	87, 102
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	1 cut(s)	68
NciI	CCSGG	1 cut(s)	34
NdeI	CATATG	1 cut(s)	6
NlaIII	CATG	2 cut(s)	130, 184
NlaIV	GGNNCC	2 cut(s)	51, 186
NspV	TTCGAA	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	61
PspN4I	GGNNCC	2 cut(s)	51, 186
PspPI	GGNCC	1 cut(s)	184
SatI	GCNGC	1 cut(s)	60
Sau96I	GGNCC	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	34
SetI	ASST	3 cut(s)	98, 162, 168
SfuI	TTCGAA	1 cut(s)	74
SgeI	CNNG	9 cut(s)	45, 46, 95, 139, 145, 151, 172, 181, 193
SsiI	CCGC	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	32
TaqI	TCGA	2 cut(s)	74, 98
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	79
TspDTI	ATGAA	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.