Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002171

Physical Location & Seq

Genomic Coordinates Reverse (-)

13629426 .. 13629773

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43346

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGGCAGTGATCAAGATCCGAAAATTGAGACCGAATCGGGGAAAGGCAAGACGAAAAAGAAAAAGCACGAGTGCTCCATATGCGGGCTGGAGTTTAGTTCGGGACAAGCGTTGGGAGGTCATATGAGAAGGCATAGAATGACGAATGCTGGGTGCAGTTCTCCAGTTCCTGCAGCTGCCGCAGTTGCTGGTGCCTCGAAGATTCCGGGGCTAATGAGGTCGAATAGTAAGAGTGTGATGTTTTTGGACATGGATCTCAACCTGACGCCTTTAGAGAATGACTTAAAGTTGTTGTTTGGGAATTGGGAATATGGCATGGCACCAAATGCTGATACTTCGATTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010045 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071289 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

115

Amino Acids

12.26

Weight (kDa)

8.49

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	23 - 46	1.5e-11	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37430 AT3G53600
fragaria_vesca	FvH4_6g14410 FvH4_6g14411
malus_domestica	MD04G1119600.v1.1 MD12G1136900.v1.1
prunus_persica	Prupe.6G249300_v2.0.a1
pyrus_communis	pycom04g10910 pycom12g13140
rosa_chinensis	RchiOBHm_Chr3g0467501 RchiOBHm_Chr3g0467521 RchiOBHm_Chr3g0467531 RchiOBHm_Chr3g0467541
rosa_laevigata	RLG00000024493 RLG00000024494 RLG00000024497 RLG00000024498 RLG00000024500 RLG00000024501
rosa_multiflora	Rmu_co8150280.1_g000001 Rmu_sc0000286.1_g000002 Rmu_sc0000286.1_g000003 Rmu_sc0000286.1_g000005 Rmu_sc0006408.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413620 Rroxscaffold_6G00413630 Rroxscaffold_6G00413640
rosa_rugosa	Rorug03G0087700 Rorug03G0087800 Rorug03G0087900 Rorug03G0087900
rosa_samantha	Rh3AG135700 Rh3AG135800 Rh3BG157300 Rh3BG157400 Rh3BG157500 Rh3BG157600 Rh3CG157400 Rh3CG157500 Rh3DG158300 Rh3DG158400
rosa_wichuraiana	Rw3G012890 Rw3G012900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	191, 319
AciI	CCGC	2 cut(s)	84, 180
AclWI	GGATC	2 cut(s)	11, 261
AcyI	GRCGYC	1 cut(s)	266
AfiI	CCNNNNNNNGG	2 cut(s)	39, 84
AluBI	AGCT	1 cut(s)	176
AluI	AGCT	1 cut(s)	176
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	1 cut(s)	23
AlwI	GGATC	2 cut(s)	11, 261
AlwNI	CAGNNNCTG	2 cut(s)	170, 188
ApeKI	GCWGC	2 cut(s)	173, 176
AsuC2I	CCSGG	1 cut(s)	207
BanI	GGYRCC	2 cut(s)	191, 319
BauI	CACGAG	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	77
BbvI	GCAGC	2 cut(s)	163, 185
BclI	TGATCA	1 cut(s)	10
BcnI	CCSGG	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	171
BisI	GCNGC	3 cut(s)	174, 177, 180
BlsI	GCNGC	3 cut(s)	175, 178, 181
Bme1390I	CCNGG	1 cut(s)	207
BmiI	GGNNCC	2 cut(s)	193, 321
BmrFI	CCNGG	1 cut(s)	207
BpmI	CTGGAG	2 cut(s)	110, 147
BpuMI	CCSGG	1 cut(s)	207
BsaBI	GATNNNNATC	1 cut(s)	15
BsaHI	GRCGYC	1 cut(s)	266
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	206
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 84
Bse1I	ACTGG	1 cut(s)	164
Bse8I	GATNNNNATC	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	206
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	2 cut(s)	39, 84
BseNI	ACTGG	1 cut(s)	164
BseXI	GCAGC	2 cut(s)	163, 185
BseYI	CCCAGC	1 cut(s)	149
BsgI	GTGCAG	1 cut(s)	175
BshNI	GGYRCC	2 cut(s)	191, 319
BsiHKAI	GWGCWC	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	206
BslFI	GGGAC	1 cut(s)	117
BslI	CCNNNNNNNGG	2 cut(s)	39, 84
BsmAI	GTCTC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	117
BsmI	GAATGC	1 cut(s)	151
Bso31I	GGTCTC	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	3 cut(s)	10, 16, 253
BspACI	CCGC	2 cut(s)	84, 180
BspLI	GGNNCC	2 cut(s)	193, 321
BspMAI	CTGCAG	1 cut(s)	175
BspPI	GGATC	2 cut(s)	11, 261
BspT107I	GGYRCC	2 cut(s)	191, 319
BspTNI	GGTCTC	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	3 cut(s)	10, 16, 253
BssNI	GRCGYC	1 cut(s)	266
BssSI	CACGAG	1 cut(s)	68
Bst2BI	CACGAG	1 cut(s)	68
BstACI	GRCGYC	1 cut(s)	266
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstC8I	GCNNGC	1 cut(s)	86
BstKTI	GATC	3 cut(s)	13, 19, 256
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	3 cut(s)	10, 16, 253
BstMWI	GCNNNNNNNGC	4 cut(s)	81, 179, 185, 326
BstSCI	CCNGG	1 cut(s)	205
BstSFI	CTRYAG	1 cut(s)	171
BstV1I	GCAGC	2 cut(s)	163, 185
BstX2I	RGATCY	2 cut(s)	16, 253
BstYI	RGATCY	2 cut(s)	16, 253
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	13
Cac8I	GCNNGC	1 cut(s)	86
CaiI	CAGNNNCTG	2 cut(s)	170, 188
CseI	GACGC	1 cut(s)	274
CviAII	CATG	2 cut(s)	250, 316
CviJI	RGCY	3 cut(s)	88, 176, 211
CviKI_1	RGCY	3 cut(s)	88, 176, 211
DpnI	GATC	3 cut(s)	12, 18, 255
DpnII	GATC	3 cut(s)	10, 16, 253
Eco31I	GGTCTC	1 cut(s)	23
FaeI	CATG	2 cut(s)	253, 319
FaiI	YATR	8 cut(s)	80, 82, 123, 125, 135, 251, 312, 317
FaqI	GGGAC	1 cut(s)	117
FatI	CATG	2 cut(s)	249, 315
FauI	CCCGC	1 cut(s)	77
FauNDI	CATATG	2 cut(s)	80, 123
FbaI	TGATCA	1 cut(s)	10
Fnu4HI	GCNGC	3 cut(s)	174, 177, 180
Fsp4HI	GCNGC	3 cut(s)	174, 177, 180
GluI	GCNGC	3 cut(s)	174, 177, 180
GsaI	CCCAGC	1 cut(s)	153
GsuI	CTGGAG	2 cut(s)	110, 147
HapII	CCGG	1 cut(s)	206
HgaI	GACGC	1 cut(s)	274
Hin1I	GRCGYC	1 cut(s)	266
Hin1II	CATG	2 cut(s)	253, 319
HinfI	GANTC	2 cut(s)	35, 202
HpaII	CCGG	1 cut(s)	206
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	3 cut(s)	14, 102, 345
HpyAV	CCTTC	1 cut(s)	123
HpyCH4V	TGCA	2 cut(s)	156, 173
HpyF10VI	GCNNNNNNNGC	4 cut(s)	81, 179, 185, 326
Hsp92I	GRCGYC	1 cut(s)	266
Hsp92II	CATG	2 cut(s)	253, 319
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	3 cut(s)	10, 16, 253
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	7 cut(s)	74, 135, 174, 177, 183, 219, 275
Lsp1109I	GCAGC	2 cut(s)	163, 185
MalI	GATC	3 cut(s)	12, 18, 255
MboI	GATC	3 cut(s)	10, 16, 253
MboII	GAAGA	1 cut(s)	211
MflI	RGATCY	2 cut(s)	16, 253
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	2 cut(s)	24, 301
MnlI	CCTC	3 cut(s)	110, 205, 210
MseI	TTAA	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	207
Mva1269I	GAATGC	1 cut(s)	151
MwoI	GCNNNNNNNGC	4 cut(s)	81, 179, 185, 326
NciI	CCSGG	1 cut(s)	207
NdeI	CATATG	2 cut(s)	80, 123
NdeII	GATC	3 cut(s)	10, 16, 253
NlaIII	CATG	2 cut(s)	253, 319
NlaIV	GGNNCC	2 cut(s)	193, 321
PcsI	WCGNNNNNNNCGW	1 cut(s)	107
PctI	GAATGC	1 cut(s)	151
PfeI	GAWTC	2 cut(s)	35, 202
PkrI	GCNGC	3 cut(s)	175, 178, 181
PspFI	CCCAGC	1 cut(s)	149
PspN4I	GGNNCC	2 cut(s)	193, 321
PstI	CTGCAG	1 cut(s)	175
PstNI	CAGNNNCTG	2 cut(s)	170, 188
PsuI	RGATCY	2 cut(s)	16, 253
PvuII	CAGCTG	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	284
SatI	GCNGC	3 cut(s)	174, 177, 180
Sau3AI	GATC	3 cut(s)	10, 16, 253
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	4 cut(s)	121, 178, 221, 264
SfcI	CTRYAG	1 cut(s)	171
Sse9I	AATT	2 cut(s)	24, 301
SsiI	CCGC	2 cut(s)	84, 180
StyD4I	CCNGG	1 cut(s)	205
TaqI	TCGA	3 cut(s)	197, 221, 338
TaqII	GACCGA	1 cut(s)	47
TasI	AATT	2 cut(s)	24, 301
TauI	GCSGC	1 cut(s)	182
TfiI	GAWTC	2 cut(s)	35, 202
Tru1I	TTAA	1 cut(s)	284
Tru9I	TTAA	1 cut(s)	284
TscAI	CASTG	1 cut(s)	13
TseI	GCWGC	2 cut(s)	173, 176
TspRI	CASTG	1 cut(s)	13
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.