Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000286.1

Orthogroup ID

OG0002171

Physical Location & Seq

Genomic Coordinates Forward (+)

22008 .. 22535

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000286.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgaagagaacgagagaagagcttgttggtggagacatggcaaacattcttatgctactatcatgtaggttagagaccaacttcaaaaaatgctcatcttccccaaaccacgtgttcgagtgcaaaacctgcaaacgccaattcccgtctttccaagctcttggtggtcacagagcaagccacaagaggccgggaacgttaatgggcagtgatcaagatccgaaaattgagaccgaatcggggaaaggcaagacgaaaaggaaaaagcacgagtgctccatatgcgggctggagtttagttcgggacaagcgttgggaggtcatatgagaaggcatagaatgacgaatgctgggtgcagttctccagttcctgcagctgcggcagttgctggtgcctcgaagattccggggctaatgaggtcgaatagtaagagggtgatgtttttgaacatggatctcaacctgacgcctttagagaatgacttaaagttgttgtttgggaattgggaatatggcaccaaatgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010045 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071289 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

175

Amino Acids

19.26

Weight (kDa)

9.66

Isoelectric Point (pI)

53.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37430 AT3G53600
fragaria_vesca	FvH4_6g14410 FvH4_6g14411
malus_domestica	MD04G1119600.v1.1 MD12G1136900.v1.1
prunus_persica	Prupe.6G249300_v2.0.a1
pyrus_communis	pycom04g10910 pycom12g13140
rosa_chinensis	RchiOBHm_Chr3g0467501 RchiOBHm_Chr3g0467521 RchiOBHm_Chr3g0467531 RchiOBHm_Chr3g0467541
rosa_laevigata	RLG00000024493 RLG00000024494 RLG00000024497 RLG00000024498 RLG00000024500 RLG00000024501
rosa_multiflora	Rmu_co8150280.1_g000001 Rmu_sc0000286.1_g000002 Rmu_sc0000286.1_g000003 Rmu_sc0000286.1_g000005 Rmu_sc0006408.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413620 Rroxscaffold_6G00413630 Rroxscaffold_6G00413640
rosa_rugosa	Rorug03G0087700 Rorug03G0087800 Rorug03G0087900 Rorug03G0087900
rosa_samantha	Rh3AG135700 Rh3AG135800 Rh3BG157300 Rh3BG157400 Rh3BG157500 Rh3BG157600 Rh3CG157400 Rh3CG157500 Rh3DG158300 Rh3DG158400
rosa_wichuraiana	Rw3G012890 Rw3G012900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	137
AccB1I	GGYRCC	2 cut(s)	392, 515
AciI	CCGC	2 cut(s)	285, 380
AclI	AACGTT	1 cut(s)	197
AclWI	GGATC	2 cut(s)	212, 462
AcvI	CACGTG	1 cut(s)	112
AcyI	GRCGYC	1 cut(s)	467
AfiI	CCNNNNNNNGG	2 cut(s)	240, 285
AflIII	ACRYGT	1 cut(s)	111
AgsI	TTSAA	2 cut(s)	85, 448
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AluBI	AGCT	3 cut(s)	22, 158, 377
AluI	AGCT	3 cut(s)	22, 158, 377
Alw21I	GWGCWC	1 cut(s)	278
Alw26I	GTCTC	3 cut(s)	27, 68, 224
AlwI	GGATC	2 cut(s)	212, 462
AlwNI	CAGNNNCTG	2 cut(s)	371, 389
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	2 cut(s)	374, 377
AsuC2I	CCSGG	2 cut(s)	192, 408
AsuHPI	GGTGA	1 cut(s)	448
BanI	GGYRCC	2 cut(s)	392, 515
BauI	CACGAG	1 cut(s)	269
BbrPI	CACGTG	1 cut(s)	112
Bbv12I	GWGCWC	1 cut(s)	278
BbvI	GCAGC	2 cut(s)	364, 386
BclI	TGATCA	1 cut(s)	211
BcnI	CCSGG	2 cut(s)	192, 408
BcoDI	GTCTC	3 cut(s)	27, 68, 224
BfmI	CTRYAG	1 cut(s)	372
BfuAI	ACCTGC	1 cut(s)	137
BisI	GCNGC	3 cut(s)	375, 378, 381
BlsI	GCNGC	3 cut(s)	376, 379, 382
Bme1390I	CCNGG	2 cut(s)	192, 408
BmiI	GGNNCC	2 cut(s)	394, 517
BmrFI	CCNGG	2 cut(s)	192, 408
BpmI	CTGGAG	2 cut(s)	311, 348
BpuMI	CCSGG	2 cut(s)	192, 408
BsaAI	YACGTR	1 cut(s)	112
BsaBI	GATNNNNATC	1 cut(s)	216
BsaHI	GRCGYC	1 cut(s)	467
BsaI	GGTCTC	2 cut(s)	68, 224
BsaJI	CCNNGG	1 cut(s)	407
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	2 cut(s)	240, 285
Bse1I	ACTGG	1 cut(s)	365
Bse8I	GATNNNNATC	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	407
BseJI	GATNNNNATC	1 cut(s)	216
BseLI	CCNNNNNNNGG	2 cut(s)	240, 285
BseNI	ACTGG	1 cut(s)	365
BseXI	GCAGC	2 cut(s)	364, 386
BseYI	CCCAGC	1 cut(s)	350
BsgI	GTGCAG	1 cut(s)	376
BshFI	GGCC	1 cut(s)	190
BshNI	GGYRCC	2 cut(s)	392, 515
BsiHKAI	GWGCWC	1 cut(s)	278
BsiSI	CCGG	2 cut(s)	191, 407
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	2 cut(s)	240, 285
BsmAI	GTCTC	3 cut(s)	27, 68, 224
BsmFI	GGGAC	1 cut(s)	318
BsmI	GAATGC	1 cut(s)	352
BsnI	GGCC	1 cut(s)	190
Bso31I	GGTCTC	2 cut(s)	68, 224
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	3 cut(s)	211, 217, 454
BspACI	CCGC	2 cut(s)	285, 380
BspANI	GGCC	1 cut(s)	190
BspLI	GGNNCC	2 cut(s)	394, 517
BspMAI	CTGCAG	1 cut(s)	376
BspMI	ACCTGC	1 cut(s)	137
BspPI	GGATC	2 cut(s)	212, 462
BspQI	GCTCTTC	1 cut(s)	12
BspT107I	GGYRCC	2 cut(s)	392, 515
BspTNI	GGTCTC	2 cut(s)	68, 224
BsrI	ACTGG	1 cut(s)	365
BssECI	CCNNGG	1 cut(s)	407
BssMI	GATC	3 cut(s)	211, 217, 454
BssNI	GRCGYC	1 cut(s)	467
BssSI	CACGAG	1 cut(s)	269
Bst2BI	CACGAG	1 cut(s)	269
Bst6I	CTCTTC	1 cut(s)	12
BstACI	GRCGYC	1 cut(s)	467
BstAPI	GCANNNNNTGC	2 cut(s)	129, 522
BstBAI	YACGTR	1 cut(s)	112
BstC8I	GCNNGC	2 cut(s)	178, 287
BstKTI	GATC	3 cut(s)	214, 220, 457
BstMAI	GTCTC	3 cut(s)	27, 68, 224
BstMBI	GATC	3 cut(s)	211, 217, 454
BstMWI	GCNNNNNNNGC	5 cut(s)	129, 282, 380, 386, 522
BstSCI	CCNGG	2 cut(s)	190, 406
BstSFI	CTRYAG	1 cut(s)	372
BstV1I	GCAGC	2 cut(s)	364, 386
BstX2I	RGATCY	2 cut(s)	217, 454
BstXI	CCANNNNNNTGG	1 cut(s)	161
BstYI	RGATCY	2 cut(s)	217, 454
BsuRI	GGCC	1 cut(s)	190
BtsI	GCAGTG	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	214
BveI	ACCTGC	1 cut(s)	137
Cac8I	GCNNGC	2 cut(s)	178, 287
CaiI	CAGNNNCTG	2 cut(s)	371, 389
CseI	GACGC	1 cut(s)	475
CviAII	CATG	3 cut(s)	37, 63, 451
CviJI	RGCY	7 cut(s)	22, 158, 180, 190, 289, 377, 412
CviKI_1	RGCY	7 cut(s)	22, 158, 180, 190, 289, 377, 412
DpnI	GATC	3 cut(s)	213, 219, 456
DpnII	GATC	3 cut(s)	211, 217, 454
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco31I	GGTCTC	2 cut(s)	68, 224
Eco72I	CACGTG	1 cut(s)	112
FaeI	CATG	3 cut(s)	40, 66, 454
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	3 cut(s)	36, 62, 450
FauI	CCCGC	1 cut(s)	278
FauNDI	CATATG	2 cut(s)	281, 324
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	3 cut(s)	375, 378, 381
Fsp4HI	GCNGC	3 cut(s)	375, 378, 381
GluI	GCNGC	3 cut(s)	375, 378, 381
GsaI	CCCAGC	1 cut(s)	354
GsuI	CTGGAG	2 cut(s)	311, 348
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	2 cut(s)	191, 407
HgaI	GACGC	1 cut(s)	475
Hin1I	GRCGYC	1 cut(s)	467
Hin1II	CATG	3 cut(s)	40, 66, 454
HinfI	GANTC	2 cut(s)	236, 403
HpaII	CCGG	2 cut(s)	191, 407
HphI	GGTGA	1 cut(s)	448
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	2 cut(s)	215, 303
HpyAV	CCTTC	1 cut(s)	324
HpyCH4IV	ACGT	2 cut(s)	111, 197
HpyCH4V	TGCA	4 cut(s)	123, 132, 357, 374
HpyF10VI	GCNNNNNNNGC	5 cut(s)	129, 282, 380, 386, 522
HpySE526I	ACGT	2 cut(s)	111, 197
Hsp92I	GRCGYC	1 cut(s)	467
Hsp92II	CATG	3 cut(s)	40, 66, 454
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	211, 217, 454
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	281
LpnPI	CCDG	9 cut(s)	142, 204, 275, 336, 375, 378, 384, 420, 476
Lsp1109I	GCAGC	2 cut(s)	364, 386
MaeII	ACGT	2 cut(s)	111, 197
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	3 cut(s)	213, 219, 456
MboI	GATC	3 cut(s)	211, 217, 454
MboII	GAAGA	4 cut(s)	16, 29, 90, 412
MflI	RGATCY	2 cut(s)	217, 454
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	3 cut(s)	140, 225, 502
MnlI	CCTC	5 cut(s)	180, 311, 406, 411, 426
MseI	TTAA	2 cut(s)	200, 485
MslI	CAYNNNNRTG	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	2 cut(s)	191, 407
MspR9I	CCNGG	2 cut(s)	192, 408
Mva1269I	GAATGC	1 cut(s)	352
MwoI	GCNNNNNNNGC	5 cut(s)	129, 282, 380, 386, 522
NciI	CCSGG	2 cut(s)	192, 408
NdeI	CATATG	2 cut(s)	281, 324
NdeII	GATC	3 cut(s)	211, 217, 454
NlaIII	CATG	3 cut(s)	40, 66, 454
NlaIV	GGNNCC	2 cut(s)	394, 517
NmuCI	GTSAC	1 cut(s)	167
PciSI	GCTCTTC	1 cut(s)	12
PcsI	WCGNNNNNNNCGW	1 cut(s)	308
PctI	GAATGC	1 cut(s)	352
PfeI	GAWTC	2 cut(s)	236, 403
PkrI	GCNGC	3 cut(s)	376, 379, 382
PmaCI	CACGTG	1 cut(s)	112
PmlI	CACGTG	1 cut(s)	112
Ppu21I	YACGTR	1 cut(s)	112
Psp1406I	AACGTT	1 cut(s)	197
PspCI	CACGTG	1 cut(s)	112
PspFI	CCCAGC	1 cut(s)	350
PspN4I	GGNNCC	2 cut(s)	394, 517
PstI	CTGCAG	1 cut(s)	376
PstNI	CAGNNNCTG	2 cut(s)	371, 389
PsuI	RGATCY	2 cut(s)	217, 454
PvuII	CAGCTG	1 cut(s)	377
RseI	CAYNNNNRTG	1 cut(s)	50
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	200, 485
SatI	GCNGC	3 cut(s)	375, 378, 381
Sau3AI	GATC	3 cut(s)	211, 217, 454
ScrFI	CCNGG	2 cut(s)	192, 408
SduI	GDGCHC	1 cut(s)	278
SfcI	CTRYAG	1 cut(s)	372
SmiMI	CAYNNNNRTG	1 cut(s)	50
Sse9I	AATT	3 cut(s)	140, 225, 502
SsiI	CCGC	2 cut(s)	285, 380
StyD4I	CCNGG	2 cut(s)	190, 406
TaiI	ACGT	2 cut(s)	114, 200
TaqI	TCGA	3 cut(s)	117, 398, 422
TaqII	GACCGA	1 cut(s)	248
TasI	AATT	3 cut(s)	140, 225, 502
TauI	GCSGC	1 cut(s)	383
TfiI	GAWTC	2 cut(s)	236, 403
Tru1I	TTAA	2 cut(s)	200, 485
Tru9I	TTAA	2 cut(s)	200, 485
TscAI	CASTG	1 cut(s)	214
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	2 cut(s)	374, 377
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	214
XcmI	CCANNNNNNNNNTGG	2 cut(s)	161, 286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.