Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002171

Physical Location & Seq

Genomic Coordinates Forward (+)

35978512 .. 35982524

Gene Structure 4013 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00413620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAAGAGAACTAGAGAAGAGGTTGTTGGTGTAGATATGGATAAAGTTCTTATGCTACTATCATGCAGGTTAGAAACCAAGTTCAAAAGATGTTCATCTACCCCAAATGATGTGTTCGAGTGCAAAACTTGCAATCGTCAATTCCCATCGTTCCAAGCTCTTGGTGGCCACAGAGCAAGCCACAAAAAGCCAAGAACGTTAATGGGCAGTGATCAAGACCCGAAAAGTGAGAACAAAATGGCGCAAAGCAAGCCGAAAAAGCACGAGTGCTCCATATGTGGGCGTGAGTTTAGTTCGGGACAAGCTTTGGGAGGTCATATGAGAAGGCATAGAACGGTGAATGCTCGGTTTTCTGCTACCATTCCTGCTGGTGCGTCGGTTGATGGTGCTTCAAAGATGAAGATTCCGATACTAATGAGATCGAATAGTAAGAGGTTGATGTGTTTGGACATGGACCTGAACTTGACGCCTCTAGAGAATGACTTGAAGCTAGAGAAAGAGAGAAAATGGAAGAGAGAGAAACCATGGGAGACTTCGCCGGAGCCCGGTCACCGGCCACCTGATTCCGGTCAACTTTCGCCTGATTTTGGTCAACGGTCGCCGGAATTTGCTAAAAATCTCACCGGAAAGTTTTTTTTGCCCCCAATAGACGACTATCAACCATGTATTGCCCCCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010045 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071289 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

226

Amino Acids

25.57

Weight (kDa)

9.53

Isoelectric Point (pI)

52.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	38 - 64	5.6e-13	C2H2-type zinc finger
zf-C2H2_6	PF13912	88 - 112	5.8e-12	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37430 AT3G53600
fragaria_vesca	FvH4_6g14410 FvH4_6g14411
malus_domestica	MD04G1119600.v1.1 MD12G1136900.v1.1
prunus_persica	Prupe.6G249300_v2.0.a1
pyrus_communis	pycom04g10910 pycom12g13140
rosa_chinensis	RchiOBHm_Chr3g0467501 RchiOBHm_Chr3g0467521 RchiOBHm_Chr3g0467531 RchiOBHm_Chr3g0467541
rosa_laevigata	RLG00000024493 RLG00000024494 RLG00000024497 RLG00000024498 RLG00000024500 RLG00000024501
rosa_multiflora	Rmu_co8150280.1_g000001 Rmu_sc0000286.1_g000002 Rmu_sc0000286.1_g000003 Rmu_sc0000286.1_g000005 Rmu_sc0006408.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413620 Rroxscaffold_6G00413630 Rroxscaffold_6G00413640
rosa_rugosa	Rorug03G0087700 Rorug03G0087800 Rorug03G0087900 Rorug03G0087900
rosa_samantha	Rh3AG135700 Rh3AG135800 Rh3BG157300 Rh3BG157400 Rh3BG157500 Rh3BG157600 Rh3CG157400 Rh3CG157500 Rh3DG158300 Rh3DG158400
rosa_wichuraiana	Rw3G012890 Rw3G012900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	57
AclI	AACGTT	1 cut(s)	197
AcoI	YGGCCR	2 cut(s)	166, 554
AcsI	RAATTY	1 cut(s)	605
AcyI	GRCGYC	1 cut(s)	467
AfiI	CCNNNNNNNGG	5 cut(s)	279, 545, 552, 566, 587
AgsI	TTSAA	3 cut(s)	85, 393, 487
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AluBI	AGCT	3 cut(s)	158, 305, 490
AluI	AGCT	3 cut(s)	158, 305, 490
Alw21I	GWGCWC	1 cut(s)	272
Alw26I	GTCTC	1 cut(s)	524
AoxI	GGCC	2 cut(s)	166, 554
ApoI	RAATTY	1 cut(s)	605
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	454
AsuC2I	CCSGG	1 cut(s)	546
AsuHPI	GGTGA	3 cut(s)	349, 542, 613
AvaII	GGWCC	1 cut(s)	454
BalI	TGGCCA	1 cut(s)	168
BanII	GRGCYC	1 cut(s)	546
BauI	CACGAG	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	272
BccI	CCATC	2 cut(s)	154, 377
BclI	TGATCA	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	546
BcoDI	GTCTC	1 cut(s)	524
BfaI	CTAG	3 cut(s)	12, 473, 491
BfuAI	ACCTGC	1 cut(s)	57
Bme1390I	CCNGG	1 cut(s)	546
Bme18I	GGWCC	1 cut(s)	454
BmgT120I	GGNCC	1 cut(s)	454
BmiI	GGNNCC	1 cut(s)	543
BmrFI	CCNGG	1 cut(s)	546
BpuMI	CCSGG	1 cut(s)	546
BsaBI	GATNNNNATC	1 cut(s)	94
BsaHI	GRCGYC	1 cut(s)	467
BsaJI	CCNNGG	1 cut(s)	524
BsaWI	WCCGGW	2 cut(s)	566, 623
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	5 cut(s)	279, 545, 552, 566, 587
Bse118I	RCCGGY	1 cut(s)	552
Bse8I	GATNNNNATC	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	524
BseJI	GATNNNNATC	1 cut(s)	94
BseLI	CCNNNNNNNGG	5 cut(s)	279, 545, 552, 566, 587
Bsh1285I	CGRYCG	1 cut(s)	599
BshFI	GGCC	2 cut(s)	168, 556
BsiEI	CGRYCG	1 cut(s)	599
BsiHKAI	GWGCWC	1 cut(s)	272
BsiSI	CCGG	6 cut(s)	539, 546, 553, 567, 602, 624
BslFI	GGGAC	1 cut(s)	312
BslI	CCNNNNNNNGG	5 cut(s)	279, 545, 552, 566, 587
BsmAI	GTCTC	1 cut(s)	524
BsmFI	GGGAC	1 cut(s)	312
BsmI	GAATGC	1 cut(s)	346
BsnI	GGCC	2 cut(s)	168, 556
Bsp1286I	GDGCHC	2 cut(s)	272, 546
Bsp143I	GATC	2 cut(s)	211, 419
Bsp19I	CCATGG	1 cut(s)	524
BspANI	GGCC	2 cut(s)	168, 556
BspLI	GGNNCC	1 cut(s)	543
BspMI	ACCTGC	1 cut(s)	57
BsrFI	RCCGGY	1 cut(s)	552
BssAI	RCCGGY	1 cut(s)	552
BssECI	CCNNGG	1 cut(s)	524
BssMI	GATC	2 cut(s)	211, 419
BssNI	GRCGYC	1 cut(s)	467
BssSI	CACGAG	1 cut(s)	263
BssT1I	CCWWGG	1 cut(s)	524
Bst2BI	CACGAG	1 cut(s)	263
Bst4CI	ACNGT	2 cut(s)	337, 597
Bst6I	CTCTTC	2 cut(s)	12, 506
BstACI	GRCGYC	1 cut(s)	467
BstAPI	GCANNNNNTGC	1 cut(s)	129
BstC8I	GCNNGC	2 cut(s)	178, 251
BstDSI	CCRYGG	1 cut(s)	524
BstEII	GGTNACC	1 cut(s)	548
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	2 cut(s)	214, 422
BstMAI	GTCTC	1 cut(s)	524
BstMBI	GATC	2 cut(s)	211, 419
BstMCI	CGRYCG	1 cut(s)	599
BstMWI	GCNNNNNNNGC	3 cut(s)	129, 250, 259
BstPI	GGTNACC	1 cut(s)	548
BstSCI	CCNGG	1 cut(s)	544
BstXI	CCANNNNNNTGG	1 cut(s)	161
BsuRI	GGCC	2 cut(s)	168, 556
BtgI	CCRYGG	1 cut(s)	524
BtsI	GCAGTG	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	214
BveI	ACCTGC	1 cut(s)	57
Cac8I	GCNNGC	2 cut(s)	178, 251
CfoI	GCGC	1 cut(s)	244
Cfr10I	RCCGGY	1 cut(s)	552
Cfr13I	GGNCC	1 cut(s)	454
CseI	GACGC	2 cut(s)	363, 475
CviAII	CATG	4 cut(s)	63, 451, 525, 663
CviJI	RGCY	9 cut(s)	158, 168, 180, 190, 253, 305, 490, 544, 556
CviKI_1	RGCY	9 cut(s)	158, 168, 180, 190, 253, 305, 490, 544, 556
DpnI	GATC	2 cut(s)	213, 421
DpnII	GATC	2 cut(s)	211, 419
EaeI	YGGCCR	2 cut(s)	166, 554
Eam1104I	CTCTTC	2 cut(s)	12, 506
EarI	CTCTTC	2 cut(s)	12, 506
Eco130I	CCWWGG	1 cut(s)	524
Eco24I	GRGCYC	1 cut(s)	546
Eco47I	GGWCC	1 cut(s)	454
Eco91I	GGTNACC	1 cut(s)	548
EcoO65I	GGTNACC	1 cut(s)	548
EcoT14I	CCWWGG	1 cut(s)	524
EcoT38I	GRGCYC	1 cut(s)	546
ErhI	CCWWGG	1 cut(s)	524
FaeI	CATG	4 cut(s)	66, 454, 528, 666
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	4 cut(s)	62, 450, 524, 662
FauNDI	CATATG	2 cut(s)	275, 318
FbaI	TGATCA	1 cut(s)	211
FriOI	GRGCYC	1 cut(s)	546
FspBI	CTAG	3 cut(s)	12, 473, 491
GlaI	GCGC	1 cut(s)	243
HaeIII	GGCC	2 cut(s)	168, 556
HapII	CCGG	6 cut(s)	539, 546, 553, 567, 602, 624
HgaI	GACGC	2 cut(s)	363, 475
HhaI	GCGC	1 cut(s)	244
Hin1I	GRCGYC	1 cut(s)	467
Hin1II	CATG	4 cut(s)	66, 454, 528, 666
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HincII	GTYRAC	2 cut(s)	572, 593
HindII	GTYRAC	2 cut(s)	572, 593
HindIII	AAGCTT	1 cut(s)	303
HinfI	GANTC	2 cut(s)	403, 563
HpaII	CCGG	6 cut(s)	539, 546, 553, 567, 602, 624
HphI	GGTGA	3 cut(s)	349, 542, 613
Hpy166II	GTNNAC	2 cut(s)	572, 593
Hpy188I	TCNGA	1 cut(s)	408
Hpy188III	TCNNGA	3 cut(s)	215, 297, 473
Hpy8I	GTNNAC	2 cut(s)	572, 593
Hpy99I	CGWCG	1 cut(s)	379
HpyAV	CCTTC	1 cut(s)	318
HpyCH4III	ACNGT	2 cut(s)	337, 597
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	3 cut(s)	66, 123, 132
HpyF10VI	GCNNNNNNNGC	3 cut(s)	129, 250, 259
HpySE526I	ACGT	1 cut(s)	197
Hsp92I	GRCGYC	1 cut(s)	467
Hsp92II	CATG	4 cut(s)	66, 454, 528, 666
HspAI	GCGC	1 cut(s)	242
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	211, 419
LmnI	GCTCC	2 cut(s)	275, 541
MaeI	CTAG	3 cut(s)	12, 473, 491
MaeII	ACGT	1 cut(s)	197
MaeIII	GTNAC	1 cut(s)	548
MalI	GATC	2 cut(s)	213, 421
MboI	GATC	2 cut(s)	211, 419
MboII	GAAGA	4 cut(s)	16, 29, 412, 523
MhlI	GDGCHC	2 cut(s)	272, 546
MlsI	TGGCCA	1 cut(s)	168
MluCI	AATT	2 cut(s)	140, 605
MluNI	TGGCCA	1 cut(s)	168
MnlI	CCTC	4 cut(s)	13, 305, 426, 480
Mox20I	TGGCCA	1 cut(s)	168
MscI	TGGCCA	1 cut(s)	168
MseI	TTAA	1 cut(s)	200
Msp20I	TGGCCA	1 cut(s)	168
MspI	CCGG	6 cut(s)	539, 546, 553, 567, 602, 624
MspR9I	CCNGG	1 cut(s)	546
Mva1269I	GAATGC	1 cut(s)	346
MwoI	GCNNNNNNNGC	3 cut(s)	129, 250, 259
NciI	CCSGG	1 cut(s)	546
NcoI	CCATGG	1 cut(s)	524
NdeI	CATATG	2 cut(s)	275, 318
NdeII	GATC	2 cut(s)	211, 419
NlaIII	CATG	4 cut(s)	66, 454, 528, 666
NlaIV	GGNNCC	1 cut(s)	543
NmuCI	GTSAC	1 cut(s)	548
PctI	GAATGC	1 cut(s)	346
PfeI	GAWTC	2 cut(s)	403, 563
Psp1406I	AACGTT	1 cut(s)	197
PspEI	GGTNACC	1 cut(s)	548
PspN4I	GGNNCC	1 cut(s)	543
PspPI	GGNCC	1 cut(s)	454
SaqAI	TTAA	1 cut(s)	200
Sau3AI	GATC	2 cut(s)	211, 419
Sau96I	GGNCC	1 cut(s)	454
ScrFI	CCNGG	1 cut(s)	546
SduI	GDGCHC	2 cut(s)	272, 546
SinI	GGWCC	1 cut(s)	454
Sse9I	AATT	2 cut(s)	140, 605
SspMI	CTAG	3 cut(s)	12, 473, 491
StyD4I	CCNGG	1 cut(s)	544
StyI	CCWWGG	1 cut(s)	524
TaaI	ACNGT	2 cut(s)	337, 597
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	2 cut(s)	117, 422
TasI	AATT	2 cut(s)	140, 605
TfiI	GAWTC	2 cut(s)	403, 563
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TscAI	CASTG	1 cut(s)	214
TseFI	GTSAC	1 cut(s)	548
Tsp45I	GTSAC	1 cut(s)	548
TspDTI	ATGAA	3 cut(s)	17, 84, 413
TspRI	CASTG	1 cut(s)	214
VpaK11BI	GGWCC	1 cut(s)	454
XapI	RAATTY	1 cut(s)	605
XbaI	TCTAGA	1 cut(s)	472
XcmI	CCANNNNNNNNNTGG	1 cut(s)	161
XspI	CTAG	3 cut(s)	12, 473, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.