Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002171

Physical Location & Seq

Genomic Coordinates Forward (+)

24489896 .. 24490735

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G249300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGAAGAGAATGAGAGAAGATGAAGTAGGGTTAGGGATGAAGGGTTTGGACATGGAAAAGTTCCTCATGCTAGTCTCATGTGACATGGAGACCAAGTTCAGAAAGTGTTCATCTCCAAACGATGTGTTTGAGTGCAAAACTTGCAACCGAAAATTCCCATCGTTCCAAGCTCTTGGTGGCCACAGAGCAAGCCACAATAGGCCGAGAACATCAATGGATCATGATCAACAAAGTGAGACCAGAAAACGAAGCAATTTGATGGCAACGAAGAACAAGCCGAAAGCGCACGAGTGCTCCATTTGTGGCCTAGAGTTTGGCATGGGACAGGCTTTGGGTGGCCATATGAGGAGGCACAGAGCTTCCAACATGAACCTGGGATTTTCTTCTAAAGTTCCTGATGAGGTTGTTGTCGCTTCGAAGATTCCGGTGCTGAGAAGGTCGAGTAGCAAGAGGATTATGTGCTTGGAGATGGACTTGAACTTGACGCCATTGGAGAATGACTTGAAGTTATTGTTCGGGGCGATGGCTCCAAAAGTTGATGCTTTTGTTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010045 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071289 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

185

Amino Acids

20.74

Weight (kDa)

9.48

Isoelectric Point (pI)

53.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37430 AT3G53600
fragaria_vesca	FvH4_6g14410 FvH4_6g14411
malus_domestica	MD04G1119600.v1.1 MD12G1136900.v1.1
prunus_persica	Prupe.6G249300_v2.0.a1
pyrus_communis	pycom04g10910 pycom12g13140
rosa_chinensis	RchiOBHm_Chr3g0467501 RchiOBHm_Chr3g0467521 RchiOBHm_Chr3g0467531 RchiOBHm_Chr3g0467541
rosa_laevigata	RLG00000024493 RLG00000024494 RLG00000024497 RLG00000024498 RLG00000024500 RLG00000024501
rosa_multiflora	Rmu_co8150280.1_g000001 Rmu_sc0000286.1_g000002 Rmu_sc0000286.1_g000003 Rmu_sc0000286.1_g000005 Rmu_sc0006408.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413620 Rroxscaffold_6G00413630 Rroxscaffold_6G00413640
rosa_rugosa	Rorug03G0087700 Rorug03G0087800 Rorug03G0087900 Rorug03G0087900
rosa_samantha	Rh3AG135700 Rh3AG135800 Rh3BG157300 Rh3BG157400 Rh3BG157500 Rh3BG157600 Rh3CG157400 Rh3CG157500 Rh3DG158300 Rh3DG158400
rosa_wichuraiana	Rw3G012890 Rw3G012900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	225
AcoI	YGGCCR	2 cut(s)	178, 337
AcsI	RAATTY	1 cut(s)	152
AcyI	GRCGYC	1 cut(s)	485
AgsI	TTSAA	2 cut(s)	478, 505
AjnI	CCWGG	1 cut(s)	372
AloI	GAACNNNNNNTCC	2 cut(s)	80, 112
AluBI	AGCT	2 cut(s)	170, 359
AluI	AGCT	2 cut(s)	170, 359
Alw21I	GWGCWC	1 cut(s)	296
Alw26I	GTCTC	3 cut(s)	79, 83, 230
AlwI	GGATC	1 cut(s)	225
AoxI	GGCC	4 cut(s)	178, 200, 304, 337
ApoI	RAATTY	1 cut(s)	152
Asp700I	GAANNNNTTC	1 cut(s)	106
AspLEI	GCGC	1 cut(s)	286
AsuII	TTCGAA	1 cut(s)	416
BalI	TGGCCA	2 cut(s)	180, 339
BauI	CACGAG	1 cut(s)	287
Bbv12I	GWGCWC	1 cut(s)	296
BccI	CCATC	4 cut(s)	166, 253, 463, 517
BciT130I	CCWGG	1 cut(s)	374
BclI	TGATCA	1 cut(s)	223
BcoDI	GTCTC	3 cut(s)	79, 83, 230
BfaI	CTAG	2 cut(s)	71, 308
Bme1390I	CCNGG	1 cut(s)	374
BmiI	GGNNCC	1 cut(s)	528
BmrFI	CCNGG	1 cut(s)	374
BmsI	GCATC	1 cut(s)	529
Bpu14I	TTCGAA	1 cut(s)	416
BsaBI	GATNNNNATC	1 cut(s)	222
BsaHI	GRCGYC	1 cut(s)	485
BsaI	GGTCTC	2 cut(s)	83, 230
BsaJI	CCNNGG	1 cut(s)	373
BsaWI	WCCGGW	1 cut(s)	424
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 110, 278, 308
Bse8I	GATNNNNATC	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	374
BseDI	CCNNGG	1 cut(s)	373
BseGI	GGATG	1 cut(s)	42
BseJI	GATNNNNATC	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	422
BseRI	GAGGAG	1 cut(s)	361
BshFI	GGCC	4 cut(s)	180, 202, 306, 339
BsiHKAI	GWGCWC	1 cut(s)	296
BsiSI	CCGG	1 cut(s)	425
BslFI	GGGAC	1 cut(s)	336
BsmAI	GTCTC	3 cut(s)	79, 83, 230
BsmFI	GGGAC	1 cut(s)	336
BsnI	GGCC	4 cut(s)	180, 202, 306, 339
Bso31I	GGTCTC	2 cut(s)	83, 230
Bsp119I	TTCGAA	1 cut(s)	416
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp143I	GATC	2 cut(s)	217, 223
BspANI	GGCC	4 cut(s)	180, 202, 306, 339
BspCNI	CTCAG	1 cut(s)	423
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	528
BspPI	GGATC	1 cut(s)	225
BspT104I	TTCGAA	1 cut(s)	416
BspTNI	GGTCTC	2 cut(s)	83, 230
BssECI	CCNNGG	1 cut(s)	373
BssMI	GATC	2 cut(s)	217, 223
BssNI	GRCGYC	1 cut(s)	485
BssSI	CACGAG	1 cut(s)	287
Bst2BI	CACGAG	1 cut(s)	287
Bst2UI	CCWGG	1 cut(s)	374
BstACI	GRCGYC	1 cut(s)	485
BstAPI	GCANNNNNTGC	1 cut(s)	141
BstBI	TTCGAA	1 cut(s)	416
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	1 cut(s)	431
BstF5I	GGATG	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	2 cut(s)	220, 226
BstMAI	GTCTC	3 cut(s)	79, 83, 230
BstMBI	GATC	2 cut(s)	217, 223
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 283
BstNI	CCWGG	1 cut(s)	374
BstSCI	CCNGG	1 cut(s)	372
BstXI	CCANNNNNNTGG	1 cut(s)	173
BsuRI	GGCC	4 cut(s)	180, 202, 306, 339
BtgZI	GCGATG	1 cut(s)	536
BtsCI	GGATG	1 cut(s)	42
Cac8I	GCNNGC	1 cut(s)	190
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	1 cut(s)	286
CseI	GACGC	1 cut(s)	493
CviAII	CATG	7 cut(s)	52, 67, 78, 85, 221, 319, 367
DdeI	CTNAG	1 cut(s)	431
DpnI	GATC	2 cut(s)	219, 225
DpnII	GATC	2 cut(s)	217, 223
EaeI	YGGCCR	2 cut(s)	178, 337
Eco31I	GGTCTC	2 cut(s)	83, 230
EcoRII	CCWGG	1 cut(s)	372
FaeI	CATG	7 cut(s)	55, 70, 81, 88, 224, 322, 370
FaqI	GGGAC	1 cut(s)	336
FatI	CATG	7 cut(s)	51, 66, 77, 84, 220, 318, 366
FauNDI	CATATG	1 cut(s)	342
FbaI	TGATCA	1 cut(s)	223
FokI	GGATG	1 cut(s)	49
FspBI	CTAG	2 cut(s)	71, 308
GlaI	GCGC	1 cut(s)	285
HaeIII	GGCC	4 cut(s)	180, 202, 306, 339
HapII	CCGG	1 cut(s)	425
HgaI	GACGC	1 cut(s)	493
HhaI	GCGC	1 cut(s)	286
Hin1I	GRCGYC	1 cut(s)	485
Hin1II	CATG	7 cut(s)	55, 70, 81, 88, 224, 322, 370
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HinfI	GANTC	1 cut(s)	421
HpaII	CCGG	1 cut(s)	425
Hpy188I	TCNGA	1 cut(s)	101
Hpy188III	TCNNGA	2 cut(s)	221, 395
HpyAV	CCTTC	2 cut(s)	34, 429
HpyCH4V	TGCA	2 cut(s)	135, 144
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 283
HpyF3I	CTNAG	1 cut(s)	431
Hsp92I	GRCGYC	1 cut(s)	485
Hsp92II	CATG	7 cut(s)	55, 70, 81, 88, 224, 322, 370
HspAI	GCGC	1 cut(s)	284
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	217, 223
LmnI	GCTCC	2 cut(s)	299, 532
LpnPI	CCDG	6 cut(s)	253, 311, 359, 386, 408, 438
LweI	GCATC	1 cut(s)	529
MaeI	CTAG	2 cut(s)	71, 308
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	2 cut(s)	219, 225
MboI	GATC	2 cut(s)	217, 223
MboII	GAAGA	5 cut(s)	16, 29, 280, 375, 430
MhlI	GDGCHC	1 cut(s)	296
MlsI	TGGCCA	2 cut(s)	180, 339
MluCI	AATT	2 cut(s)	152, 253
MluNI	TGGCCA	2 cut(s)	180, 339
MmeI	TCCRAC	1 cut(s)	387
MnlI	CCTC	5 cut(s)	74, 339, 342, 394, 444
Mox20I	TGGCCA	2 cut(s)	180, 339
MroXI	GAANNNNTTC	1 cut(s)	106
MscI	TGGCCA	2 cut(s)	180, 339
Msp20I	TGGCCA	2 cut(s)	180, 339
MspI	CCGG	1 cut(s)	425
MspR9I	CCNGG	1 cut(s)	374
MvaI	CCWGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	2 cut(s)	141, 283
NdeI	CATATG	1 cut(s)	342
NdeII	GATC	2 cut(s)	217, 223
NlaIII	CATG	7 cut(s)	55, 70, 81, 88, 224, 322, 370
NlaIV	GGNNCC	1 cut(s)	528
NmeAIII	GCCGAG	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	80
NspV	TTCGAA	1 cut(s)	416
PagI	TCATGA	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	421
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	528
Sau3AI	GATC	2 cut(s)	217, 223
ScrFI	CCNGG	1 cut(s)	374
SduI	GDGCHC	1 cut(s)	296
SetI	ASST	5 cut(s)	172, 361, 375, 405, 440
SfaNI	GCATC	1 cut(s)	529
SfuI	TTCGAA	1 cut(s)	416
Sse9I	AATT	2 cut(s)	152, 253
SspMI	CTAG	2 cut(s)	71, 308
StyD4I	CCNGG	1 cut(s)	372
TaqI	TCGA	2 cut(s)	416, 440
TasI	AATT	2 cut(s)	152, 253
TfiI	GAWTC	1 cut(s)	421
TseFI	GTSAC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	6 cut(s)	17, 36, 53, 99, 383, 540
XapI	RAATTY	1 cut(s)	152
XcmI	CCANNNNNNNNNTGG	2 cut(s)	173, 370
XmnI	GAANNNNTTC	1 cut(s)	106
XspI	CTAG	2 cut(s)	71, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.