Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002171

Physical Location & Seq

Genomic Coordinates Forward (+)

15706285 .. 15707224

Gene Structure 940 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G37430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAAGAGAGAAAGATCTGATTTCGAAGAATCCCTCAAGAATATTGACATTGCTAAATGTCTGATGATACTAGCACAAACCTCCATGGTCAAACAGATCGGTTTGAACCAACATACCGAGAGCCATACAAGCAACCAATTCGAATGCAAAACATGTAACAAGAGATTTTCTTCGTTTCAAGCCCTTGGTGGCCACCGGGCAAGCCATAAGAAGCCAAAGCTCACCGTTGAGCAGAAAGATGTGAAACATCTTAGCAACGATTATAAAGGAAATCATTTTCACAAGTGTTCCATATGCAGTCAGAGTTTTGGGACCGGACAGGCTTTAGGTGGTCACATGAGACGGCATAGGTCAAGCATGACGGTCGAGCCATCGTTCATCTCTCCGATGATTCCATCCATGCCGGTTTTGAAACGATGCGGTAGTAGTAAGAGGATTTTGAGTTTGGATTTGAATCTGACTCCGTTAGAGAATGATCTTGAATATATCTTTGGGAAGACATTTGTCCCAAAAATAGATATGAAGTTCGTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010045 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071289 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

178

Amino Acids

20.23

Weight (kDa)

9.55

Isoelectric Point (pI)

56.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	47 - 72	6.6e-13	C2H2-type zinc finger
zf-C2H2_6	PF13912	94 - 118	5.6e-11	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37430 AT3G53600
fragaria_vesca	FvH4_6g14410 FvH4_6g14411
malus_domestica	MD04G1119600.v1.1 MD12G1136900.v1.1
prunus_persica	Prupe.6G249300_v2.0.a1
pyrus_communis	pycom04g10910 pycom12g13140
rosa_chinensis	RchiOBHm_Chr3g0467501 RchiOBHm_Chr3g0467521 RchiOBHm_Chr3g0467531 RchiOBHm_Chr3g0467541
rosa_laevigata	RLG00000024493 RLG00000024494 RLG00000024497 RLG00000024498 RLG00000024500 RLG00000024501
rosa_multiflora	Rmu_co8150280.1_g000001 Rmu_sc0000286.1_g000002 Rmu_sc0000286.1_g000003 Rmu_sc0000286.1_g000005 Rmu_sc0006408.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413620 Rroxscaffold_6G00413630 Rroxscaffold_6G00413640
rosa_rugosa	Rorug03G0087700 Rorug03G0087800 Rorug03G0087900 Rorug03G0087900
rosa_samantha	Rh3AG135700 Rh3AG135800 Rh3BG157300 Rh3BG157400 Rh3BG157500 Rh3BG157600 Rh3CG157400 Rh3CG157500 Rh3DG158300 Rh3DG158400
rosa_wichuraiana	Rw3G012890 Rw3G012900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	264
AciI	CCGC	1 cut(s)	420
AcoI	YGGCCR	1 cut(s)	190
AflIII	ACRYGT	1 cut(s)	152
AgsI	TTSAA	5 cut(s)	106, 179, 412, 454, 482
AjuI	GAANNNNNNNTTGG	2 cut(s)	474, 506
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
Alw26I	GTCTC	1 cut(s)	334
AoxI	GGCC	1 cut(s)	190
AspS9I	GGNCC	1 cut(s)	312
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	214
AsuII	TTCGAA	2 cut(s)	24, 141
AvaII	GGWCC	1 cut(s)	312
BalI	TGGCCA	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	503
BccI	CCATC	2 cut(s)	379, 403
BceAI	ACGGC	1 cut(s)	359
BcgI	CGANNNNNNTGC	4 cut(s)	121, 155, 346, 380
BcnI	CCSGG	1 cut(s)	197
BcoDI	GTCTC	1 cut(s)	334
BfaI	CTAG	1 cut(s)	71
BglII	AGATCT	1 cut(s)	14
Bme1390I	CCNGG	1 cut(s)	197
Bme18I	GGWCC	1 cut(s)	312
BmgT120I	GGNCC	1 cut(s)	312
BmiI	GGNNCC	1 cut(s)	313
BmrFI	CCNGG	1 cut(s)	197
BmsI	GCATC	1 cut(s)	407
BoxI	GACNNNNGTC	1 cut(s)	503
BpiI	GAAGAC	1 cut(s)	503
Bpu14I	TTCGAA	2 cut(s)	24, 141
BpuEI	CTTGAG	1 cut(s)	20
BpuMI	CCSGG	1 cut(s)	197
BsaBI	GATNNNNATC	1 cut(s)	453
BsaJI	CCNNGG	2 cut(s)	84, 184
BsaWI	WCCGGW	1 cut(s)	314
Bse118I	RCCGGY	1 cut(s)	403
Bse3DI	GCAATG	1 cut(s)	48
Bse8I	GATNNNNATC	1 cut(s)	453
BseDI	CCNNGG	2 cut(s)	84, 184
BseGI	GGATG	1 cut(s)	395
BseJI	GATNNNNATC	1 cut(s)	453
BseMI	GCAATG	1 cut(s)	48
Bsh1285I	CGRYCG	1 cut(s)	366
BshFI	GGCC	1 cut(s)	192
BsiEI	CGRYCG	1 cut(s)	366
BsiSI	CCGG	3 cut(s)	196, 315, 404
BslFI	GGGAC	2 cut(s)	325, 491
BsmAI	GTCTC	1 cut(s)	334
BsmBI	CGTCTC	1 cut(s)	334
BsmFI	GGGAC	2 cut(s)	325, 491
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	192
Bsp119I	TTCGAA	2 cut(s)	24, 141
Bsp143I	GATC	3 cut(s)	14, 96, 475
Bsp19I	CCATGG	1 cut(s)	84
BspACI	CCGC	1 cut(s)	420
BspANI	GGCC	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	313
BspT104I	TTCGAA	2 cut(s)	24, 141
BsrDI	GCAATG	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	403
BssAI	RCCGGY	1 cut(s)	403
BssECI	CCNNGG	2 cut(s)	84, 184
BssMI	GATC	3 cut(s)	14, 96, 475
BssT1I	CCWWGG	2 cut(s)	84, 184
Bst4CI	ACNGT	2 cut(s)	226, 364
BstBI	TTCGAA	2 cut(s)	24, 141
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	1 cut(s)	251
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	1 cut(s)	395
BstKTI	GATC	3 cut(s)	17, 99, 478
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	3 cut(s)	14, 96, 475
BstMCI	CGRYCG	1 cut(s)	366
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstNSI	RCATGY	1 cut(s)	156
BstPAI	GACNNNNGTC	1 cut(s)	503
BstSCI	CCNGG	1 cut(s)	195
BstV2I	GAAGAC	1 cut(s)	503
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	192
BtgI	CCRYGG	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	395
Cac8I	GCNNGC	1 cut(s)	202
Cfr10I	RCCGGY	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	312
CviAII	CATG	5 cut(s)	85, 153, 337, 358, 400
CviJI	RGCY	8 cut(s)	123, 182, 192, 204, 214, 220, 323, 370
CviKI_1	RGCY	8 cut(s)	123, 182, 192, 204, 214, 220, 323, 370
DdeI	CTNAG	1 cut(s)	251
DpnI	GATC	3 cut(s)	16, 98, 477
DpnII	GATC	3 cut(s)	14, 96, 475
EaeI	YGGCCR	1 cut(s)	190
Eco130I	CCWWGG	2 cut(s)	84, 184
Eco47I	GGWCC	1 cut(s)	312
EcoT14I	CCWWGG	2 cut(s)	84, 184
ErhI	CCWWGG	2 cut(s)	84, 184
Esp3I	CGTCTC	1 cut(s)	334
FaeI	CATG	5 cut(s)	88, 156, 340, 361, 403
FaqI	GGGAC	2 cut(s)	325, 491
FatI	CATG	5 cut(s)	84, 152, 336, 357, 399
FauNDI	CATATG	1 cut(s)	293
FokI	GGATG	1 cut(s)	382
FspBI	CTAG	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	3 cut(s)	196, 315, 404
Hin1II	CATG	5 cut(s)	88, 156, 340, 361, 403
HinfI	GANTC	4 cut(s)	29, 391, 454, 460
HpaII	CCGG	3 cut(s)	196, 315, 404
HphI	GGTGA	1 cut(s)	214
Hpy188I	TCNGA	5 cut(s)	19, 63, 303, 387, 459
Hpy188III	TCNNGA	2 cut(s)	37, 479
HpyCH4III	ACNGT	2 cut(s)	226, 364
HpyCH4V	TGCA	2 cut(s)	147, 297
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
HpyF3I	CTNAG	1 cut(s)	251
Hsp92II	CATG	5 cut(s)	88, 156, 340, 361, 403
Kzo9I	GATC	3 cut(s)	14, 96, 475
LpnPI	CCDG	4 cut(s)	209, 305, 328, 417
LweI	GCATC	1 cut(s)	407
MaeI	CTAG	1 cut(s)	71
MaeIII	GTNAC	2 cut(s)	155, 332
MalI	GATC	3 cut(s)	16, 98, 477
MboI	GATC	3 cut(s)	14, 96, 475
MboII	GAAGA	4 cut(s)	16, 38, 162, 508
MflI	RGATCY	1 cut(s)	14
MlsI	TGGCCA	1 cut(s)	192
MluCI	AATT	1 cut(s)	137
MluNI	TGGCCA	1 cut(s)	192
MlyI	GAGTC	1 cut(s)	454
MnlI	CCTC	3 cut(s)	44, 91, 426
Mox20I	TGGCCA	1 cut(s)	192
MscI	TGGCCA	1 cut(s)	192
Msp20I	TGGCCA	1 cut(s)	192
MspI	CCGG	3 cut(s)	196, 315, 404
MspR9I	CCNGG	1 cut(s)	197
Mva1269I	GAATGC	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	129
NciI	CCSGG	1 cut(s)	197
NcoI	CCATGG	1 cut(s)	84
NdeI	CATATG	1 cut(s)	293
NdeII	GATC	3 cut(s)	14, 96, 475
NlaIII	CATG	5 cut(s)	88, 156, 340, 361, 403
NlaIV	GGNNCC	1 cut(s)	313
NmuCI	GTSAC	1 cut(s)	332
NspI	RCATGY	1 cut(s)	156
NspV	TTCGAA	2 cut(s)	24, 141
PciI	ACATGT	1 cut(s)	152
PctI	GAATGC	1 cut(s)	149
PfeI	GAWTC	3 cut(s)	29, 391, 454
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
PscI	ACATGT	1 cut(s)	152
PshAI	GACNNNNGTC	1 cut(s)	503
PsiI	TTATAA	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	313
PspPI	GGNCC	1 cut(s)	312
PsuI	RGATCY	1 cut(s)	14
Sau3AI	GATC	3 cut(s)	14, 96, 475
Sau96I	GGNCC	1 cut(s)	312
SchI	GAGTC	1 cut(s)	454
ScrFI	CCNGG	1 cut(s)	197
SetI	ASST	4 cut(s)	83, 222, 331, 353
SfaNI	GCATC	1 cut(s)	407
SfuI	TTCGAA	2 cut(s)	24, 141
SinI	GGWCC	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	1 cut(s)	137
SsiI	CCGC	1 cut(s)	420
SspI	AATATT	1 cut(s)	43
SspMI	CTAG	1 cut(s)	71
StyD4I	CCNGG	1 cut(s)	195
StyI	CCWWGG	2 cut(s)	84, 184
TaaI	ACNGT	2 cut(s)	226, 364
TaqI	TCGA	3 cut(s)	24, 141, 366
TasI	AATT	1 cut(s)	137
TfiI	GAWTC	3 cut(s)	29, 391, 454
TseFI	GTSAC	1 cut(s)	332
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	3 cut(s)	17, 367, 536
TspGWI	ACGGA	1 cut(s)	453
VpaK11BI	GGWCC	1 cut(s)	312
XceI	RCATGY	1 cut(s)	156
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.