Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000286.1

Orthogroup ID

OG0002171

Physical Location & Seq

Genomic Coordinates Forward (+)

12946 .. 13964

Gene Structure 1019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000286.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atgaagagaactagagaagaggttgttggtgtagacatggataaagttcttatgctactatcatgtaggttagaaaccaagttcaaaagatgttcatctaccccaaatgatgtgttcgagtgcaaaacttgcaatcgtcaattcccatcgttccaagctcttggtggccacagagcaagccacaaaaagccaagaacgttaatgggcagtgatcaagacccgaaaagtgagaacaaaatggcacaaagcaagccgaaaaagcacgagtgctccatatgtgggcgtgagtttagttcgggacaagctttggggggtcatatgagaaggcatagaacagtgaatgctcggttttctgctaccattcctgctggtgcgtcggttgatggtgcttcaaagatgaagattccgatactaatgagatcgaatagaaaaaatgcaatctttgttcctatcaggcggcgagcccttcgccatcgtcggacgggtcttgtcatcctcgtgtgggactgccgtgaggccgggcttctcgatccatgtctctggtttggattggggagattgaggaggcggtatgtgaggtgcggaatgggagagatcgcagcaattgtcaggtttggtggagttgtcgtcgcgacgtggctggagtcagatcggcagcaggattgcttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010045 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071289 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

223

Amino Acids

25.27

Weight (kDa)

10.43

Isoelectric Point (pI)

56.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37430 AT3G53600
fragaria_vesca	FvH4_6g14410 FvH4_6g14411
malus_domestica	MD04G1119600.v1.1 MD12G1136900.v1.1
prunus_persica	Prupe.6G249300_v2.0.a1
pyrus_communis	pycom04g10910 pycom12g13140
rosa_chinensis	RchiOBHm_Chr3g0467501 RchiOBHm_Chr3g0467521 RchiOBHm_Chr3g0467531 RchiOBHm_Chr3g0467541
rosa_laevigata	RLG00000024493 RLG00000024494 RLG00000024497 RLG00000024498 RLG00000024500 RLG00000024501
rosa_multiflora	Rmu_co8150280.1_g000001 Rmu_sc0000286.1_g000002 Rmu_sc0000286.1_g000003 Rmu_sc0000286.1_g000005 Rmu_sc0006408.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413620 Rroxscaffold_6G00413630 Rroxscaffold_6G00413640
rosa_rugosa	Rorug03G0087700 Rorug03G0087800 Rorug03G0087900 Rorug03G0087900
rosa_samantha	Rh3AG135700 Rh3AG135800 Rh3BG157300 Rh3BG157400 Rh3BG157500 Rh3BG157600 Rh3CG157400 Rh3CG157500 Rh3DG158300 Rh3DG158400
rosa_wichuraiana	Rw3G012890 Rw3G012900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	33
AccII	CGCG	1 cut(s)	632
AciI	CCGC	3 cut(s)	457, 568, 582
AclI	AACGTT	1 cut(s)	197
AclWI	GGATC	1 cut(s)	524
AcoI	YGGCCR	1 cut(s)	166
AfiI	CCNNNNNNNGG	2 cut(s)	279, 502
AgsI	TTSAA	2 cut(s)	85, 393
AjiI	CACGTC	1 cut(s)	636
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AluBI	AGCT	2 cut(s)	158, 305
AluI	AGCT	2 cut(s)	158, 305
Alw21I	GWGCWC	1 cut(s)	272
Alw26I	GTCTC	1 cut(s)	542
AlwI	GGATC	1 cut(s)	524
AoxI	GGCC	2 cut(s)	166, 516
ApeKI	GCWGC	2 cut(s)	599, 655
AsuC2I	CCSGG	1 cut(s)	520
BalI	TGGCCA	1 cut(s)	168
BanII	GRGCYC	1 cut(s)	466
BauI	CACGAG	2 cut(s)	263, 497
Bbv12I	GWGCWC	1 cut(s)	272
BbvI	GCAGC	2 cut(s)	611, 667
BccI	CCATC	3 cut(s)	154, 377, 480
BceAI	ACGGC	1 cut(s)	495
BclI	TGATCA	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	520
BcoDI	GTCTC	1 cut(s)	542
BfaI	CTAG	1 cut(s)	12
BisI	GCNGC	3 cut(s)	458, 600, 656
BlsI	GCNGC	3 cut(s)	459, 601, 657
Bme1390I	CCNGG	1 cut(s)	520
BmgBI	CACGTC	1 cut(s)	636
BmrFI	CCNGG	1 cut(s)	520
BpmI	CTGGAG	1 cut(s)	662
BpuMI	CCSGG	1 cut(s)	520
BsaBI	GATNNNNATC	1 cut(s)	94
BsaXI	ACNNNNNCTCC	4 cut(s)	254, 284, 612, 642
Bsc4I	CCNNNNNNNGG	2 cut(s)	279, 502
Bse8I	GATNNNNATC	1 cut(s)	94
BseGI	GGATG	1 cut(s)	492
BseJI	GATNNNNATC	1 cut(s)	94
BseLI	CCNNNNNNNGG	2 cut(s)	279, 502
BseRI	GAGGAG	1 cut(s)	577
BseXI	GCAGC	2 cut(s)	611, 667
Bsh1236I	CGCG	1 cut(s)	632
BshFI	GGCC	2 cut(s)	168, 518
BsiHKAI	GWGCWC	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	519
BslFI	GGGAC	2 cut(s)	312, 518
BslI	CCNNNNNNNGG	2 cut(s)	279, 502
BsmAI	GTCTC	1 cut(s)	542
BsmFI	GGGAC	2 cut(s)	312, 518
BsmI	GAATGC	1 cut(s)	346
BsnI	GGCC	2 cut(s)	168, 518
Bsp1286I	GDGCHC	2 cut(s)	272, 466
Bsp143I	GATC	5 cut(s)	211, 419, 529, 594, 649
Bsp68I	TCGCGA	1 cut(s)	632
BspACI	CCGC	3 cut(s)	457, 568, 582
BspANI	GGCC	2 cut(s)	168, 518
BspFNI	CGCG	1 cut(s)	632
BspPI	GGATC	1 cut(s)	524
BssMI	GATC	5 cut(s)	211, 419, 529, 594, 649
BssSI	CACGAG	2 cut(s)	263, 497
Bst2BI	CACGAG	2 cut(s)	263, 497
Bst4CI	ACNGT	1 cut(s)	337
Bst6I	CTCTTC	1 cut(s)	12
BstAPI	GCANNNNNTGC	1 cut(s)	129
BstC8I	GCNNGC	3 cut(s)	178, 251, 462
BstF5I	GGATG	1 cut(s)	492
BstFNI	CGCG	1 cut(s)	632
BstKTI	GATC	5 cut(s)	214, 422, 532, 597, 652
BstMAI	GTCTC	1 cut(s)	542
BstMBI	GATC	5 cut(s)	211, 419, 529, 594, 649
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 259
BstSCI	CCNGG	1 cut(s)	518
BstUI	CGCG	1 cut(s)	632
BstV1I	GCAGC	2 cut(s)	611, 667
BstXI	CCANNNNNNTGG	2 cut(s)	161, 540
BsuRI	GGCC	2 cut(s)	168, 518
BtrI	CACGTC	1 cut(s)	636
BtsCI	GGATG	1 cut(s)	492
BtsI	GCAGTG	1 cut(s)	214
BtsIMutI	CAGTG	2 cut(s)	214, 342
BtuMI	TCGCGA	1 cut(s)	632
Cac8I	GCNNGC	3 cut(s)	178, 251, 462
CseI	GACGC	1 cut(s)	363
CviAII	CATG	3 cut(s)	37, 63, 534
DpnI	GATC	5 cut(s)	213, 421, 531, 596, 651
DpnII	GATC	5 cut(s)	211, 419, 529, 594, 649
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco24I	GRGCYC	1 cut(s)	466
EcoT38I	GRGCYC	1 cut(s)	466
FaeI	CATG	3 cut(s)	40, 66, 537
FaqI	GGGAC	2 cut(s)	312, 518
FatI	CATG	3 cut(s)	36, 62, 533
FauNDI	CATATG	2 cut(s)	275, 318
FbaI	TGATCA	1 cut(s)	211
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	3 cut(s)	458, 600, 656
FokI	GGATG	1 cut(s)	479
FriOI	GRGCYC	1 cut(s)	466
Fsp4HI	GCNGC	3 cut(s)	458, 600, 656
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	3 cut(s)	458, 600, 656
GsuI	CTGGAG	1 cut(s)	662
HaeIII	GGCC	2 cut(s)	168, 518
HapII	CCGG	1 cut(s)	519
HgaI	GACGC	1 cut(s)	363
Hin1II	CATG	3 cut(s)	40, 66, 537
HindIII	AAGCTT	1 cut(s)	303
HinfI	GANTC	2 cut(s)	403, 644
HpaII	CCGG	1 cut(s)	519
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	3 cut(s)	408, 480, 649
Hpy188III	TCNNGA	4 cut(s)	215, 297, 527, 631
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	4 cut(s)	379, 480, 632, 637
HpyAV	CCTTC	2 cut(s)	318, 476
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	2 cut(s)	197, 635
HpyCH4V	TGCA	3 cut(s)	123, 132, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 259
HpySE526I	ACGT	2 cut(s)	197, 635
Hsp92II	CATG	3 cut(s)	40, 66, 537
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	5 cut(s)	211, 419, 529, 594, 649
LmnI	GCTCC	1 cut(s)	275
LpnPI	CCDG	8 cut(s)	354, 378, 439, 526, 532, 595, 626, 644
Lsp1109I	GCAGC	2 cut(s)	611, 667
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	2 cut(s)	197, 635
MalI	GATC	5 cut(s)	213, 421, 531, 596, 651
MboI	GATC	5 cut(s)	211, 419, 529, 594, 649
MboII	GAAGA	3 cut(s)	16, 29, 412
MfeI	CAATTG	1 cut(s)	603
MhlI	GDGCHC	2 cut(s)	272, 466
MlsI	TGGCCA	1 cut(s)	168
MluCI	AATT	2 cut(s)	140, 603
MluNI	TGGCCA	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	653
MmeI	TCCRAC	1 cut(s)	458
MnlI	CCTC	6 cut(s)	13, 506, 508, 555, 558, 570
Mox20I	TGGCCA	1 cut(s)	168
MscI	TGGCCA	1 cut(s)	168
MseI	TTAA	1 cut(s)	200
MslI	CAYNNNNRTG	1 cut(s)	497
Msp20I	TGGCCA	1 cut(s)	168
MspI	CCGG	1 cut(s)	519
MspR9I	CCNGG	1 cut(s)	520
MunI	CAATTG	1 cut(s)	603
Mva1269I	GAATGC	1 cut(s)	346
MvnI	CGCG	1 cut(s)	632
MwoI	GCNNNNNNNGC	2 cut(s)	129, 259
NciI	CCSGG	1 cut(s)	520
NdeI	CATATG	2 cut(s)	275, 318
NdeII	GATC	5 cut(s)	211, 419, 529, 594, 649
NlaIII	CATG	3 cut(s)	40, 66, 537
NruI	TCGCGA	1 cut(s)	632
PctI	GAATGC	1 cut(s)	346
PfeI	GAWTC	1 cut(s)	403
PkrI	GCNGC	3 cut(s)	459, 601, 657
PleI	GAGTC	1 cut(s)	652
PpsI	GAGTC	1 cut(s)	652
Psp1406I	AACGTT	1 cut(s)	197
RruI	TCGCGA	1 cut(s)	632
RseI	CAYNNNNRTG	1 cut(s)	497
SaqAI	TTAA	1 cut(s)	200
SatI	GCNGC	3 cut(s)	458, 600, 656
Sau3AI	GATC	5 cut(s)	211, 419, 529, 594, 649
SchI	GAGTC	1 cut(s)	653
ScrFI	CCNGG	1 cut(s)	520
SduI	GDGCHC	2 cut(s)	272, 466
SetI	ASST	8 cut(s)	24, 71, 160, 200, 307, 581, 614, 638
SmiMI	CAYNNNNRTG	1 cut(s)	497
Sse9I	AATT	2 cut(s)	140, 603
SsiI	CCGC	3 cut(s)	457, 568, 582
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	1 cut(s)	518
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	2 cut(s)	200, 638
TaqI	TCGA	3 cut(s)	117, 422, 528
TasI	AATT	2 cut(s)	140, 603
TauI	GCSGC	1 cut(s)	460
TfiI	GAWTC	1 cut(s)	403
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TscAI	CASTG	2 cut(s)	214, 342
TseI	GCWGC	2 cut(s)	599, 655
TspDTI	ATGAA	3 cut(s)	17, 84, 413
TspRI	CASTG	2 cut(s)	214, 342
XcmI	CCANNNNNNNNNTGG	1 cut(s)	161
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.