Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002171

Physical Location & Seq

Genomic Coordinates Forward (+)

21401714 .. 21402241

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1136900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAAGAGAGATATGAGAGCAGAGGAATTAGGGTTTGGAATTAAGGGTTTAGACATGGCAAAGTGTCTAATGCTACTATCATGTGGCATGCAGACCAAAACATGTTCGTCTTCAAACGATGTGTTCGAGTGCAAAACTTGCAACCGGAAGTTTGCGTCGTTCCAAGCTCTCGGCGGCCACAGAGCGAGCCACAAGAGGCCGAGAACATCGACAAGTCATGATGATGAAGACCGTAAAAATGAACCTGACAAGAAGGCTAAAACACACGAGTGCTTGATATGTGGATCAAAGTTCGGCATGGGACAAGCCTTGGGTGGTCATATGAGGAGGCACAAAGCTTCTAATATGAACATGGCCAGTTTTCCTCACGCTCCTTCAGTTGTTTCGTCGAAGATTCCAGTCTTAACAAGGTCAAATAGTAAAAGAGTTATGAGCTTGGAGATGGATTTGAACTTGACACCGTTGGAGAATGACTTGAAGTTATTGTTTGGGAAGATGGCACCAAATGTTGATGCTTTTGCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010045 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071289 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

176

Amino Acids

19.35

Weight (kDa)

9.46

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	41 - 67	1.5e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	89 - 113	3.7e-08	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37430 AT3G53600
fragaria_vesca	FvH4_6g14410 FvH4_6g14411
malus_domestica	MD04G1119600.v1.1 MD12G1136900.v1.1
prunus_persica	Prupe.6G249300_v2.0.a1
pyrus_communis	pycom04g10910 pycom12g13140
rosa_chinensis	RchiOBHm_Chr3g0467501 RchiOBHm_Chr3g0467521 RchiOBHm_Chr3g0467531 RchiOBHm_Chr3g0467541
rosa_laevigata	RLG00000024493 RLG00000024494 RLG00000024497 RLG00000024498 RLG00000024500 RLG00000024501
rosa_multiflora	Rmu_co8150280.1_g000001 Rmu_sc0000286.1_g000002 Rmu_sc0000286.1_g000003 Rmu_sc0000286.1_g000005 Rmu_sc0006408.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413620 Rroxscaffold_6G00413630 Rroxscaffold_6G00413640
rosa_rugosa	Rorug03G0087700 Rorug03G0087800 Rorug03G0087900 Rorug03G0087900
rosa_samantha	Rh3AG135700 Rh3AG135800 Rh3BG157300 Rh3BG157400 Rh3BG157500 Rh3BG157600 Rh3CG157400 Rh3CG157500 Rh3DG158300 Rh3DG158400
rosa_wichuraiana	Rw3G012890 Rw3G012900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	499
AciI	CCGC	1 cut(s)	174
AclWI	GGATC	1 cut(s)	292
AcoI	YGGCCR	2 cut(s)	175, 354
AcuI	CTGAAG	1 cut(s)	360
AflIII	ACRYGT	1 cut(s)	101
AgsI	TTSAA	3 cut(s)	114, 451, 478
AjuI	GAANNNNNNNTTGG	2 cut(s)	18, 50
AleI	CACNNNNGTG	1 cut(s)	268
AluBI	AGCT	3 cut(s)	167, 338, 435
AluI	AGCT	3 cut(s)	167, 338, 435
AlwI	GGATC	1 cut(s)	292
AoxI	GGCC	3 cut(s)	175, 197, 354
BalI	TGGCCA	1 cut(s)	356
BanI	GGYRCC	1 cut(s)	499
BauI	CACGAG	1 cut(s)	266
BbsI	GAAGAC	2 cut(s)	102, 234
BccI	CCATC	2 cut(s)	436, 490
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	501
BmsI	GCATC	1 cut(s)	502
BpiI	GAAGAC	2 cut(s)	102, 234
BsaJI	CCNNGG	1 cut(s)	309
BsaWI	WCCGGW	1 cut(s)	144
Bse1I	ACTGG	2 cut(s)	357, 398
BseDI	CCNNGG	1 cut(s)	309
BseNI	ACTGG	2 cut(s)	357, 398
BseRI	GAGGAG	1 cut(s)	340
BshFI	GGCC	3 cut(s)	177, 199, 356
BshNI	GGYRCC	1 cut(s)	499
BsiSI	CCGG	1 cut(s)	145
BslFI	GGGAC	1 cut(s)	315
BsmFI	GGGAC	1 cut(s)	315
BsnI	GGCC	3 cut(s)	177, 199, 356
Bsp143I	GATC	1 cut(s)	284
BspACI	CCGC	1 cut(s)	174
BspANI	GGCC	3 cut(s)	177, 199, 356
BspHI	TCATGA	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	501
BspPI	GGATC	1 cut(s)	292
BspT107I	GGYRCC	1 cut(s)	499
BsrI	ACTGG	2 cut(s)	357, 398
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	1 cut(s)	284
BssSI	CACGAG	1 cut(s)	266
BssT1I	CCWWGG	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	266
Bst4CI	ACNGT	2 cut(s)	233, 462
BstAPI	GCANNNNNTGC	1 cut(s)	138
BstC8I	GCNNGC	2 cut(s)	89, 187
BstKTI	GATC	1 cut(s)	287
BstMBI	GATC	1 cut(s)	284
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstNSI	RCATGY	2 cut(s)	91, 105
BstV2I	GAAGAC	2 cut(s)	102, 234
BsuRI	GGCC	3 cut(s)	177, 199, 356
Cac8I	GCNNGC	2 cut(s)	89, 187
CciI	TCATGA	1 cut(s)	217
CseI	GACGC	1 cut(s)	144
CviAII	CATG	7 cut(s)	55, 81, 88, 102, 218, 298, 352
CviJI	RGCY	9 cut(s)	167, 177, 189, 199, 257, 308, 338, 356, 435
CviKI_1	RGCY	9 cut(s)	167, 177, 189, 199, 257, 308, 338, 356, 435
DpnI	GATC	1 cut(s)	286
DpnII	GATC	1 cut(s)	284
EaeI	YGGCCR	2 cut(s)	175, 354
Eco130I	CCWWGG	1 cut(s)	309
Eco57I	CTGAAG	1 cut(s)	360
EcoT14I	CCWWGG	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	7 cut(s)	58, 84, 91, 105, 221, 301, 355
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	7 cut(s)	54, 80, 87, 101, 217, 297, 351
FauNDI	CATATG	1 cut(s)	321
Fnu4HI	GCNGC	1 cut(s)	175
Fsp4HI	GCNGC	1 cut(s)	175
GluI	GCNGC	1 cut(s)	175
HaeIII	GGCC	3 cut(s)	177, 199, 356
HapII	CCGG	1 cut(s)	145
HgaI	GACGC	1 cut(s)	144
Hin1II	CATG	7 cut(s)	58, 84, 91, 105, 221, 301, 355
HindIII	AAGCTT	1 cut(s)	336
HinfI	GANTC	1 cut(s)	394
HpaII	CCGG	1 cut(s)	145
Hpy188III	TCNNGA	1 cut(s)	218
Hpy99I	CGWCG	2 cut(s)	160, 391
HpyAV	CCTTC	2 cut(s)	247, 384
HpyCH4III	ACNGT	2 cut(s)	233, 462
HpyCH4V	TGCA	4 cut(s)	91, 132, 141, 521
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
Hsp92II	CATG	7 cut(s)	58, 84, 91, 105, 221, 301, 355
Kzo9I	GATC	1 cut(s)	284
LmnI	GCTCC	1 cut(s)	376
LpnPI	CCDG	4 cut(s)	158, 258, 370, 411
LweI	GCATC	1 cut(s)	502
MalI	GATC	1 cut(s)	286
MboI	GATC	1 cut(s)	284
MboII	GAAGA	5 cut(s)	16, 102, 239, 403, 505
MlsI	TGGCCA	1 cut(s)	356
MluCI	AATT	2 cut(s)	26, 39
MluNI	TGGCCA	1 cut(s)	356
MmeI	TCCRAC	1 cut(s)	444
MnlI	CCTC	5 cut(s)	16, 189, 318, 321, 375
Mox20I	TGGCCA	1 cut(s)	356
MscI	TGGCCA	1 cut(s)	356
MseI	TTAA	2 cut(s)	42, 404
MslI	CAYNNNNRTG	2 cut(s)	222, 268
Msp20I	TGGCCA	1 cut(s)	356
MspI	CCGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	1 cut(s)	138
NdeI	CATATG	1 cut(s)	321
NdeII	GATC	1 cut(s)	284
NlaIII	CATG	7 cut(s)	58, 84, 91, 105, 221, 301, 355
NlaIV	GGNNCC	1 cut(s)	501
NmeAIII	GCCGAG	2 cut(s)	150, 225
NspI	RCATGY	2 cut(s)	91, 105
OliI	CACNNNNGTG	1 cut(s)	268
PaeI	GCATGC	1 cut(s)	91
PagI	TCATGA	1 cut(s)	217
PciI	ACATGT	1 cut(s)	101
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	394
PkrI	GCNGC	1 cut(s)	176
PscI	ACATGT	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	501
RseI	CAYNNNNRTG	2 cut(s)	222, 268
SaqAI	TTAA	2 cut(s)	42, 404
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	1 cut(s)	284
SetI	ASST	5 cut(s)	169, 247, 340, 413, 437
SfaNI	GCATC	1 cut(s)	502
SmiMI	CAYNNNNRTG	2 cut(s)	222, 268
SphI	GCATGC	1 cut(s)	91
Sse9I	AATT	2 cut(s)	26, 39
SsiI	CCGC	1 cut(s)	174
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	2 cut(s)	233, 462
TaqI	TCGA	3 cut(s)	126, 209, 389
TasI	AATT	2 cut(s)	26, 39
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	394
Tru1I	TTAA	2 cut(s)	42, 404
Tru9I	TTAA	2 cut(s)	42, 404
TspDTI	ATGAA	4 cut(s)	17, 240, 255, 362
XceI	RCATGY	2 cut(s)	91, 105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.