Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002171

Physical Location & Seq

Genomic Coordinates Forward (+)

36410371 .. 36410907

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024494

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAAGAGAACTAGAGAAGAGGTTGTTGGTGTAGGCATGGATAAAGTTCTTATGCTACTATCATGTAGGTTTGAAACCAAGTTCAAAAGATGTTCATCTACCCCAAATGATGTGTTCGAGTGCAAAACTTGCAATCGTCAATTCCCATCGTTCCAAGCTCTTGGTGGCCACAGAGCAAGCCACAAAAAGCCAAGAACTTTAATGGGCAGTGATCAAGACCCGATAAGTGAGAACAAAATGGCGCAAAGCAAGCCGAAAAAGCACGAGTGCTCCATATGTGGGCGTGCGTTTAGTTCGGGACAAGCTTTGGGGGGTCATATGAGAAGGCATAGAACGGTGAATACTCGGTTTTCTGCTACCATTGCTGCTGGTGCGTCGGTTGACGGTGCTTCAAAGATGAAGATTCCGATACTAATGAGATCGAATAGTAAGAGGTTGATGTGTTTGGACATGGACCTGAACTTGACGCCTCTAGAGAATGACTTGAAGCTGTTGTTTGGGAATATGGCACCAAAACTTGATACATTGATTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010045 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071289 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

179

Amino Acids

19.81

Weight (kDa)

9.86

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	38 - 64	4e-13	C2H2-type zinc finger
zf-C2H2_6	PF13912	88 - 112	9.1e-12	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37430 AT3G53600
fragaria_vesca	FvH4_6g14410 FvH4_6g14411
malus_domestica	MD04G1119600.v1.1 MD12G1136900.v1.1
prunus_persica	Prupe.6G249300_v2.0.a1
pyrus_communis	pycom04g10910 pycom12g13140
rosa_chinensis	RchiOBHm_Chr3g0467501 RchiOBHm_Chr3g0467521 RchiOBHm_Chr3g0467531 RchiOBHm_Chr3g0467541
rosa_laevigata	RLG00000024493 RLG00000024494 RLG00000024497 RLG00000024498 RLG00000024500 RLG00000024501
rosa_multiflora	Rmu_co8150280.1_g000001 Rmu_sc0000286.1_g000002 Rmu_sc0000286.1_g000003 Rmu_sc0000286.1_g000005 Rmu_sc0006408.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413620 Rroxscaffold_6G00413630 Rroxscaffold_6G00413640
rosa_rugosa	Rorug03G0087700 Rorug03G0087800 Rorug03G0087900 Rorug03G0087900
rosa_samantha	Rh3AG135700 Rh3AG135800 Rh3BG157300 Rh3BG157400 Rh3BG157500 Rh3BG157600 Rh3CG157400 Rh3CG157500 Rh3DG158300 Rh3DG158400
rosa_wichuraiana	Rw3G012890 Rw3G012900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	508
AcoI	YGGCCR	1 cut(s)	166
AcyI	GRCGYC	1 cut(s)	467
AfiI	CCNNNNNNNGG	1 cut(s)	279
AgsI	TTSAA	4 cut(s)	74, 85, 393, 487
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AluBI	AGCT	3 cut(s)	158, 305, 490
AluI	AGCT	3 cut(s)	158, 305, 490
Alw21I	GWGCWC	1 cut(s)	272
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	454
AsuHPI	GGTGA	1 cut(s)	349
AvaII	GGWCC	1 cut(s)	454
BalI	TGGCCA	1 cut(s)	168
BanI	GGYRCC	1 cut(s)	508
BauI	CACGAG	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	352
BccI	CCATC	1 cut(s)	154
BclI	TGATCA	1 cut(s)	211
BfaI	CTAG	2 cut(s)	12, 473
BisI	GCNGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	367
Bme18I	GGWCC	1 cut(s)	454
BmgT120I	GGNCC	1 cut(s)	454
BmiI	GGNNCC	1 cut(s)	510
BsaBI	GATNNNNATC	1 cut(s)	94
BsaHI	GRCGYC	1 cut(s)	467
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
Bse3DI	GCAATG	1 cut(s)	360
Bse8I	GATNNNNATC	1 cut(s)	94
BseJI	GATNNNNATC	1 cut(s)	94
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseMI	GCAATG	1 cut(s)	360
BseXI	GCAGC	1 cut(s)	352
BshFI	GGCC	1 cut(s)	168
BshNI	GGYRCC	1 cut(s)	508
BsiHKAI	GWGCWC	1 cut(s)	272
BslFI	GGGAC	1 cut(s)	312
BslI	CCNNNNNNNGG	1 cut(s)	279
BsmFI	GGGAC	1 cut(s)	312
BsnI	GGCC	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp143I	GATC	2 cut(s)	211, 419
BspANI	GGCC	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	510
BspT107I	GGYRCC	1 cut(s)	508
BsrDI	GCAATG	1 cut(s)	360
BssMI	GATC	2 cut(s)	211, 419
BssNI	GRCGYC	1 cut(s)	467
BssSI	CACGAG	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	263
Bst4CI	ACNGT	2 cut(s)	337, 386
Bst6I	CTCTTC	1 cut(s)	12
BstACI	GRCGYC	1 cut(s)	467
BstAPI	GCANNNNNTGC	1 cut(s)	129
BstC8I	GCNNGC	3 cut(s)	178, 251, 285
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	2 cut(s)	214, 422
BstMBI	GATC	2 cut(s)	211, 419
BstMWI	GCNNNNNNNGC	5 cut(s)	129, 250, 259, 362, 371
BstV1I	GCAGC	1 cut(s)	352
BstXI	CCANNNNNNTGG	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	168
BtsI	GCAGTG	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	214
Cac8I	GCNNGC	3 cut(s)	178, 251, 285
CfoI	GCGC	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	454
CseI	GACGC	2 cut(s)	363, 475
CviAII	CATG	3 cut(s)	37, 63, 451
CviJI	RGCY	7 cut(s)	158, 168, 180, 190, 253, 305, 490
CviKI_1	RGCY	7 cut(s)	158, 168, 180, 190, 253, 305, 490
DpnI	GATC	2 cut(s)	213, 421
DpnII	GATC	2 cut(s)	211, 419
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	454
FaeI	CATG	3 cut(s)	40, 66, 454
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	3 cut(s)	36, 62, 450
FauNDI	CATATG	2 cut(s)	275, 318
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	366
Fsp4HI	GCNGC	1 cut(s)	366
FspBI	CTAG	2 cut(s)	12, 473
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	168
HgaI	GACGC	2 cut(s)	363, 475
HhaI	GCGC	1 cut(s)	244
Hin1I	GRCGYC	1 cut(s)	467
Hin1II	CATG	3 cut(s)	40, 66, 454
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HindIII	AAGCTT	1 cut(s)	303
HinfI	GANTC	1 cut(s)	403
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	1 cut(s)	408
Hpy188III	TCNNGA	3 cut(s)	215, 297, 473
Hpy8I	GTNNAC	1 cut(s)	382
Hpy99I	CGWCG	1 cut(s)	379
HpyAV	CCTTC	1 cut(s)	318
HpyCH4III	ACNGT	2 cut(s)	337, 386
HpyCH4V	TGCA	2 cut(s)	123, 132
HpyF10VI	GCNNNNNNNGC	5 cut(s)	129, 250, 259, 362, 371
Hsp92I	GRCGYC	1 cut(s)	467
Hsp92II	CATG	3 cut(s)	40, 66, 454
HspAI	GCGC	1 cut(s)	242
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	211, 419
LmnI	GCTCC	1 cut(s)	275
LpnPI	CCDG	2 cut(s)	354, 470
Lsp1109I	GCAGC	1 cut(s)	352
MaeI	CTAG	2 cut(s)	12, 473
MalI	GATC	2 cut(s)	213, 421
MboI	GATC	2 cut(s)	211, 419
MboII	GAAGA	3 cut(s)	16, 29, 412
MhlI	GDGCHC	1 cut(s)	272
MlsI	TGGCCA	1 cut(s)	168
MluCI	AATT	1 cut(s)	140
MluNI	TGGCCA	1 cut(s)	168
MnlI	CCTC	3 cut(s)	13, 426, 480
Mox20I	TGGCCA	1 cut(s)	168
MscI	TGGCCA	1 cut(s)	168
MseI	TTAA	1 cut(s)	200
Msp20I	TGGCCA	1 cut(s)	168
MwoI	GCNNNNNNNGC	5 cut(s)	129, 250, 259, 362, 371
NdeI	CATATG	2 cut(s)	275, 318
NdeII	GATC	2 cut(s)	211, 419
NlaIII	CATG	3 cut(s)	40, 66, 454
NlaIV	GGNNCC	1 cut(s)	510
PfeI	GAWTC	1 cut(s)	403
PkrI	GCNGC	1 cut(s)	367
PspN4I	GGNNCC	1 cut(s)	510
PspPI	GGNCC	1 cut(s)	454
PsrI	GAACNNNNNNTAC	2 cut(s)	325, 357
SaqAI	TTAA	1 cut(s)	200
SatI	GCNGC	1 cut(s)	366
Sau3AI	GATC	2 cut(s)	211, 419
Sau96I	GGNCC	1 cut(s)	454
SduI	GDGCHC	1 cut(s)	272
SetI	ASST	7 cut(s)	24, 71, 160, 307, 437, 459, 492
SinI	GGWCC	1 cut(s)	454
Sse9I	AATT	1 cut(s)	140
SspMI	CTAG	2 cut(s)	12, 473
TaaI	ACNGT	2 cut(s)	337, 386
TaqI	TCGA	2 cut(s)	117, 422
TasI	AATT	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	403
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TscAI	CASTG	1 cut(s)	214
TseI	GCWGC	1 cut(s)	365
TspDTI	ATGAA	4 cut(s)	17, 84, 413, 522
TspRI	CASTG	1 cut(s)	214
VpaK11BI	GGWCC	1 cut(s)	454
XbaI	TCTAGA	1 cut(s)	472
XcmI	CCANNNNNNNNNTGG	1 cut(s)	161
XspI	CTAG	2 cut(s)	12, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.