Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002171

Physical Location & Seq

Genomic Coordinates Forward (+)

36425197 .. 36425706

Gene Structure 510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024498

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAGAGAAGAGCTTGTTGGTGTAGACGTGGCAAACATTCTTATGCTACTATCATGTAGGTTAGAGACCAACTTCAGAAAATGCTCATCTTCCCCAGACCACGTGTTCGAGTGCAAAACCTGCAAACGCCAATTCCCGTCTTTCCAAGCTCTTGGTGGTCACAGAGCAAGCCACAAGAGGCCGAGAACGTTAATGGGTAGTGATCAAGATCCGAAAAGTGAGACCGAATCGGGGAATGTAAAGACAAAAAAGCACGAGTGCTGCATATGCGGGCTGGAGTTTAGTTCGGGACAAGCGTTGGGGGGTCATATGAGAAGGCATAGAATGACGAATGCTGGGTCTAGTTCTCCAGTTCCTGCTGCTGCGGCAGTTGCTGGTGCCTCGAAGATTCCGGTGCTAATGAGGTCGAATAGTAAGAGGGTGTTTTTGGACATGGTTCTCAACCTGACGCCTTTAGAGAATGACTTGAAGTTGTTCTTTGGGAATTGGGAATATGGCACCAAATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010045 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071289 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

170

Amino Acids

18.66

Weight (kDa)

9.24

Isoelectric Point (pI)

51.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	35 - 61	1e-12	C2H2-type zinc finger
zf-C2H2_6	PF13912	85 - 108	2.6e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37430 AT3G53600
fragaria_vesca	FvH4_6g14410 FvH4_6g14411
malus_domestica	MD04G1119600.v1.1 MD12G1136900.v1.1
prunus_persica	Prupe.6G249300_v2.0.a1
pyrus_communis	pycom04g10910 pycom12g13140
rosa_chinensis	RchiOBHm_Chr3g0467501 RchiOBHm_Chr3g0467521 RchiOBHm_Chr3g0467531 RchiOBHm_Chr3g0467541
rosa_laevigata	RLG00000024493 RLG00000024494 RLG00000024497 RLG00000024498 RLG00000024500 RLG00000024501
rosa_multiflora	Rmu_co8150280.1_g000001 Rmu_sc0000286.1_g000002 Rmu_sc0000286.1_g000003 Rmu_sc0000286.1_g000005 Rmu_sc0006408.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413620 Rroxscaffold_6G00413630 Rroxscaffold_6G00413640
rosa_rugosa	Rorug03G0087700 Rorug03G0087800 Rorug03G0087900 Rorug03G0087900
rosa_samantha	Rh3AG135700 Rh3AG135800 Rh3BG157300 Rh3BG157400 Rh3BG157500 Rh3BG157600 Rh3CG157400 Rh3CG157500 Rh3DG158300 Rh3DG158400
rosa_wichuraiana	Rw3G012890 Rw3G012900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	128
AccB1I	GGYRCC	2 cut(s)	377, 497
AccI	GTMKAC	1 cut(s)	24
AciI	CCGC	2 cut(s)	270, 365
AclI	AACGTT	1 cut(s)	188
AclWI	GGATC	1 cut(s)	203
AcuI	CTGAAG	1 cut(s)	58
AcvI	CACGTG	1 cut(s)	103
AcyI	GRCGYC	1 cut(s)	449
AfiI	CCNNNNNNNGG	1 cut(s)	231
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	1 cut(s)	469
AjiI	CACGTC	1 cut(s)	28
AjuI	GAANNNNNNNTTGG	1 cut(s)	32
AluBI	AGCT	2 cut(s)	13, 149
AluI	AGCT	2 cut(s)	13, 149
Alw26I	GTCTC	2 cut(s)	59, 215
AlwI	GGATC	1 cut(s)	203
AlwNI	CAGNNNCTG	2 cut(s)	356, 374
AoxI	GGCC	1 cut(s)	179
ApeKI	GCWGC	3 cut(s)	261, 359, 362
ArsI	GACNNNNNNTTYG	4 cut(s)	89, 121, 323, 355
Asp700I	GAANNNNTTC	1 cut(s)	473
BanI	GGYRCC	2 cut(s)	377, 497
BauI	CACGAG	1 cut(s)	254
BbrPI	CACGTG	1 cut(s)	103
BbvI	GCAGC	3 cut(s)	248, 346, 349
BclI	TGATCA	1 cut(s)	202
BcoDI	GTCTC	2 cut(s)	59, 215
BfaI	CTAG	1 cut(s)	342
BfuAI	ACCTGC	1 cut(s)	128
BisI	GCNGC	4 cut(s)	262, 360, 363, 366
BlsI	GCNGC	4 cut(s)	263, 361, 364, 367
BmgBI	CACGTC	1 cut(s)	28
BmiI	GGNNCC	2 cut(s)	379, 499
BpmI	CTGGAG	2 cut(s)	296, 333
BsaAI	YACGTR	1 cut(s)	103
BsaBI	GATNNNNATC	1 cut(s)	207
BsaHI	GRCGYC	1 cut(s)	449
BsaI	GGTCTC	2 cut(s)	59, 215
BsaWI	WCCGGW	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse1I	ACTGG	1 cut(s)	350
Bse8I	GATNNNNATC	1 cut(s)	207
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	350
BseXI	GCAGC	3 cut(s)	248, 346, 349
BseYI	CCCAGC	1 cut(s)	335
BshFI	GGCC	1 cut(s)	181
BshNI	GGYRCC	2 cut(s)	377, 497
BsiSI	CCGG	1 cut(s)	392
BslFI	GGGAC	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	2 cut(s)	59, 215
BsmFI	GGGAC	1 cut(s)	303
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	1 cut(s)	181
Bso31I	GGTCTC	2 cut(s)	59, 215
Bsp143I	GATC	2 cut(s)	202, 208
BspACI	CCGC	2 cut(s)	270, 365
BspANI	GGCC	1 cut(s)	181
BspLI	GGNNCC	2 cut(s)	379, 499
BspMI	ACCTGC	1 cut(s)	128
BspPI	GGATC	1 cut(s)	203
BspQI	GCTCTTC	1 cut(s)	3
BspT107I	GGYRCC	2 cut(s)	377, 497
BspTNI	GGTCTC	2 cut(s)	59, 215
BsrI	ACTGG	1 cut(s)	350
BssMI	GATC	2 cut(s)	202, 208
BssNI	GRCGYC	1 cut(s)	449
BssSI	CACGAG	1 cut(s)	254
Bst2BI	CACGAG	1 cut(s)	254
Bst6I	CTCTTC	1 cut(s)	3
BstACI	GRCGYC	1 cut(s)	449
BstAPI	GCANNNNNTGC	2 cut(s)	120, 504
BstBAI	YACGTR	1 cut(s)	103
BstC8I	GCNNGC	2 cut(s)	169, 272
BstKTI	GATC	2 cut(s)	205, 211
BstMAI	GTCTC	2 cut(s)	59, 215
BstMBI	GATC	2 cut(s)	202, 208
BstMWI	GCNNNNNNNGC	5 cut(s)	120, 267, 365, 371, 504
BstV1I	GCAGC	3 cut(s)	248, 346, 349
BstX2I	RGATCY	1 cut(s)	208
BstXI	CCANNNNNNTGG	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	181
BtrI	CACGTC	1 cut(s)	28
BveI	ACCTGC	1 cut(s)	128
Cac8I	GCNNGC	2 cut(s)	169, 272
CaiI	CAGNNNCTG	2 cut(s)	356, 374
CseI	GACGC	1 cut(s)	457
CviAII	CATG	2 cut(s)	54, 433
CviJI	RGCY	5 cut(s)	13, 149, 171, 181, 274
CviKI_1	RGCY	5 cut(s)	13, 149, 171, 181, 274
DpnI	GATC	2 cut(s)	204, 210
DpnII	GATC	2 cut(s)	202, 208
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
Eco31I	GGTCTC	2 cut(s)	59, 215
Eco57I	CTGAAG	1 cut(s)	58
Eco72I	CACGTG	1 cut(s)	103
FaeI	CATG	2 cut(s)	57, 436
FaiI	YATR	9 cut(s)	44, 55, 266, 268, 309, 311, 321, 434, 495
FalI	AAGNNNNNCTT	2 cut(s)	461, 493
FaqI	GGGAC	1 cut(s)	303
FatI	CATG	2 cut(s)	53, 432
FauI	CCCGC	1 cut(s)	263
FauNDI	CATATG	2 cut(s)	266, 309
FbaI	TGATCA	1 cut(s)	202
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	4 cut(s)	262, 360, 363, 366
Fsp4HI	GCNGC	4 cut(s)	262, 360, 363, 366
FspBI	CTAG	1 cut(s)	342
GluI	GCNGC	4 cut(s)	262, 360, 363, 366
GsaI	CCCAGC	1 cut(s)	339
GsuI	CTGGAG	2 cut(s)	296, 333
HaeIII	GGCC	1 cut(s)	181
HapII	CCGG	1 cut(s)	392
HgaI	GACGC	1 cut(s)	457
Hin1I	GRCGYC	1 cut(s)	449
Hin1II	CATG	2 cut(s)	57, 436
HinfI	GANTC	2 cut(s)	227, 388
HpaII	CCGG	1 cut(s)	392
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	2 cut(s)	77, 213
Hpy188III	TCNNGA	2 cut(s)	206, 288
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	309
HpyCH4IV	ACGT	3 cut(s)	27, 102, 188
HpyCH4V	TGCA	3 cut(s)	114, 123, 264
HpyF10VI	GCNNNNNNNGC	5 cut(s)	120, 267, 365, 371, 504
HpySE526I	ACGT	3 cut(s)	27, 102, 188
Hsp92I	GRCGYC	1 cut(s)	449
Hsp92II	CATG	2 cut(s)	57, 436
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	202, 208
LguI	GCTCTTC	1 cut(s)	3
LpnPI	CCDG	9 cut(s)	108, 133, 260, 321, 360, 363, 369, 405, 458
Lsp1109I	GCAGC	3 cut(s)	248, 346, 349
MaeI	CTAG	1 cut(s)	342
MaeII	ACGT	3 cut(s)	27, 102, 188
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	2 cut(s)	204, 210
MboI	GATC	2 cut(s)	202, 208
MboII	GAAGA	3 cut(s)	20, 81, 397
MflI	RGATCY	1 cut(s)	208
MluCI	AATT	2 cut(s)	131, 484
MnlI	CCTC	4 cut(s)	171, 391, 396, 411
MroXI	GAANNNNTTC	1 cut(s)	473
MseI	TTAA	1 cut(s)	191
MslI	CAYNNNNRTG	1 cut(s)	41
MspI	CCGG	1 cut(s)	392
Mva1269I	GAATGC	1 cut(s)	337
MwoI	GCNNNNNNNGC	5 cut(s)	120, 267, 365, 371, 504
NdeI	CATATG	2 cut(s)	266, 309
NdeII	GATC	2 cut(s)	202, 208
NlaIII	CATG	2 cut(s)	57, 436
NlaIV	GGNNCC	2 cut(s)	379, 499
NmeAIII	GCCGAG	1 cut(s)	207
NmuCI	GTSAC	1 cut(s)	158
PciSI	GCTCTTC	1 cut(s)	3
PcsI	WCGNNNNNNNCGW	1 cut(s)	293
PctI	GAATGC	1 cut(s)	337
PdmI	GAANNNNTTC	1 cut(s)	473
PfeI	GAWTC	2 cut(s)	227, 388
PkrI	GCNGC	4 cut(s)	263, 361, 364, 367
PmaCI	CACGTG	1 cut(s)	103
PmlI	CACGTG	1 cut(s)	103
Ppu21I	YACGTR	1 cut(s)	103
Psp1406I	AACGTT	1 cut(s)	188
PspCI	CACGTG	1 cut(s)	103
PspFI	CCCAGC	1 cut(s)	335
PspN4I	GGNNCC	2 cut(s)	379, 499
PstNI	CAGNNNCTG	2 cut(s)	356, 374
PsuI	RGATCY	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	41
SapI	GCTCTTC	1 cut(s)	3
SaqAI	TTAA	1 cut(s)	191
SatI	GCNGC	4 cut(s)	262, 360, 363, 366
Sau3AI	GATC	2 cut(s)	202, 208
SetI	ASST	9 cut(s)	15, 30, 62, 105, 122, 151, 191, 407, 447
SmiMI	CAYNNNNRTG	1 cut(s)	41
Sse9I	AATT	2 cut(s)	131, 484
SsiI	CCGC	2 cut(s)	270, 365
SspMI	CTAG	1 cut(s)	342
TaiI	ACGT	3 cut(s)	30, 105, 191
TaqI	TCGA	3 cut(s)	108, 383, 407
TaqII	GACCGA	1 cut(s)	239
TasI	AATT	2 cut(s)	131, 484
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	2 cut(s)	227, 388
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	3 cut(s)	261, 359, 362
Tsp45I	GTSAC	1 cut(s)	158
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	24
XmnI	GAANNNNTTC	1 cut(s)	473
XspI	CTAG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.