Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002171

Physical Location & Seq

Genomic Coordinates Forward (+)

36407112 .. 36408995

Gene Structure 1884 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024493

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGAAGACAATGAGAAATCAAGAGGTTATGGGTTTAGACATGGCCAAATGTCTGATGCTCCTCTCTTGTAGATTAGAGACCAAGTTCAAAAAGTGTTCATCGTCGCCAAACGATGTGTACGAGTGCAAAACCTGCAACCGCCAATTCTCATCGTTCCAAGCCCTTGGTGGCCACAGAGCGAGTCACAAGAAGCCGAGATCGTTGCTGGGCAGCGATCAGGACTCGAAAAGTGAGACCAACTTGGCGCAAAGCGAGCCGAAAAAGCACGAGTGCTCCATATGCGGGATGGAGTTCAGTTTGGGGCAAGCTTTGGGGGGTCATATGCGAAGGCACAGAATGATGAACGCCGGGTTTTCTTTTTCGGTTCCTTCTGCGGCTGTTGTTGCTTCTAAGATTCCTGTGCTGATGAGGTCGAATAGTAAGAGGGTGATGTGTTTGGACATGGACTTGAACTTGACGCCTCTGGAAAATGACCTGAAGGTCTTGTTTGGGGACATGGCTCCAAAAGTTGATACTTTGACACAACCGGATCTTCGCCGCCAAGCCCGACTCAAAGCCTTGCGACCTCAAGCCCAGACACCGCTGTCCGACACTACTCGTGCTTGCTCCTCCTCTGCAGCCCAGACGACAACCACAAAGACAATCCCCAGCCTCTCTCCGCTGCTGTCGCCCTCGTCACTCACCGCCTGGACCGAAAACCGCCACCATGGTCTAAGGAAACCCCTTACTGCACCCACGATCGCCGCAGAGATCTCTCCCCACGTCGCCTTTCCCAAAGGAAGAAGCGCCGCCGCCAATCAAAACCTAAGTTTCAAAAGCCAAGTCTCACCGAGAAGCTTGGAGACAACTCGTAGAGAAAACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010045 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071289 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

289

Amino Acids

31.74

Weight (kDa)

9.87

Isoelectric Point (pI)

53.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	39 - 65	1.5e-12	C2H2-type zinc finger
zf-C2H2_6	PF13912	89 - 112	1.6e-08	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37430 AT3G53600
fragaria_vesca	FvH4_6g14410 FvH4_6g14411
malus_domestica	MD04G1119600.v1.1 MD12G1136900.v1.1
prunus_persica	Prupe.6G249300_v2.0.a1
pyrus_communis	pycom04g10910 pycom12g13140
rosa_chinensis	RchiOBHm_Chr3g0467501 RchiOBHm_Chr3g0467521 RchiOBHm_Chr3g0467531 RchiOBHm_Chr3g0467541
rosa_laevigata	RLG00000024493 RLG00000024494 RLG00000024497 RLG00000024498 RLG00000024500 RLG00000024501
rosa_multiflora	Rmu_co8150280.1_g000001 Rmu_sc0000286.1_g000002 Rmu_sc0000286.1_g000003 Rmu_sc0000286.1_g000005 Rmu_sc0006408.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413620 Rroxscaffold_6G00413630 Rroxscaffold_6G00413640
rosa_rugosa	Rorug03G0087700 Rorug03G0087800 Rorug03G0087900 Rorug03G0087900
rosa_samantha	Rh3AG135700 Rh3AG135800 Rh3BG157300 Rh3BG157400 Rh3BG157500 Rh3BG157600 Rh3CG157400 Rh3CG157500 Rh3DG158300 Rh3DG158400
rosa_wichuraiana	Rw3G012890 Rw3G012900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	479, 583
Acc36I	ACCTGC	1 cut(s)	140
AclWI	GGATC	1 cut(s)	537
AcoI	YGGCCR	2 cut(s)	42, 169
AcuI	CTGAAG	1 cut(s)	497
AcyI	GRCGYC	1 cut(s)	458
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	282
AgsI	TTSAA	3 cut(s)	88, 451, 814
AjiI	CACGTC	1 cut(s)	763
AjnI	CCWGG	1 cut(s)	686
AluBI	AGCT	2 cut(s)	308, 837
AluI	AGCT	2 cut(s)	308, 837
Alw21I	GWGCWC	1 cut(s)	275
Alw26I	GTCTC	4 cut(s)	71, 227, 829, 836
AlwI	GGATC	1 cut(s)	537
AoxI	GGCC	2 cut(s)	42, 169
ApeKI	GCWGC	3 cut(s)	210, 617, 661
ArsI	GACNNNNNNTTYG	2 cut(s)	807, 839
AspLEI	GCGC	2 cut(s)	247, 788
AspS9I	GGNCC	1 cut(s)	690
AsuC2I	CCSGG	1 cut(s)	349
AsuHPI	GGTGA	3 cut(s)	439, 673, 819
AvaII	GGWCC	1 cut(s)	690
BalI	TGGCCA	2 cut(s)	44, 171
BauI	CACGAG	2 cut(s)	266, 597
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	275
BbvI	GCAGC	3 cut(s)	222, 629, 648
BccI	CCATC	1 cut(s)	280
BcgI	CGANNNNNNTGC	2 cut(s)	184, 218
BciT130I	CCWGG	1 cut(s)	688
BcnI	CCSGG	1 cut(s)	349
BcoDI	GTCTC	4 cut(s)	71, 227, 829, 836
BfmI	CTRYAG	1 cut(s)	615
BfoI	RGCGCY	1 cut(s)	789
BfuAI	ACCTGC	1 cut(s)	140
BglII	AGATCT	1 cut(s)	750
BisI	GCNGC	8 cut(s)	211, 375, 538, 618, 662, 744, 789, 792
BlsI	GCNGC	8 cut(s)	212, 376, 539, 619, 663, 745, 790, 793
Bme1390I	CCNGG	2 cut(s)	349, 688
Bme18I	GGWCC	1 cut(s)	690
BmgBI	CACGTC	1 cut(s)	763
BmgT120I	GGNCC	1 cut(s)	690
BmiI	GGNNCC	2 cut(s)	366, 501
BmrFI	CCNGG	2 cut(s)	349, 688
BmsI	GCATC	1 cut(s)	45
BpiI	GAAGAC	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	552
BpuMI	CCSGG	1 cut(s)	349
BsaHI	GRCGYC	1 cut(s)	458
BsaI	GGTCTC	2 cut(s)	71, 227
BsaJI	CCNNGG	2 cut(s)	163, 706
BsaWI	WCCGGW	1 cut(s)	526
BsaXI	ACNNNNNCTCC	2 cut(s)	257, 287
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	688
BseDI	CCNNGG	2 cut(s)	163, 706
BseGI	GGATG	1 cut(s)	291
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseRI	GAGGAG	3 cut(s)	50, 598, 601
BseXI	GCAGC	3 cut(s)	222, 629, 648
BseYI	CCCAGC	2 cut(s)	205, 647
BsgI	GTGCAG	1 cut(s)	714
Bsh1285I	CGRYCG	1 cut(s)	741
BshFI	GGCC	2 cut(s)	44, 171
BsiEI	CGRYCG	1 cut(s)	741
BsiHKAI	GWGCWC	1 cut(s)	275
BsiSI	CCGG	2 cut(s)	348, 527
BslFI	GGGAC	1 cut(s)	506
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmAI	GTCTC	4 cut(s)	71, 227, 829, 836
BsmFI	GGGAC	1 cut(s)	506
BsnI	GGCC	2 cut(s)	44, 171
Bso31I	GGTCTC	2 cut(s)	71, 227
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp143I	GATC	5 cut(s)	197, 214, 529, 738, 750
Bsp19I	CCATGG	1 cut(s)	706
BspANI	GGCC	2 cut(s)	44, 171
BspLI	GGNNCC	2 cut(s)	366, 501
BspMAI	CTGCAG	1 cut(s)	619
BspMI	ACCTGC	1 cut(s)	140
BspPI	GGATC	1 cut(s)	537
BspTNI	GGTCTC	2 cut(s)	71, 227
BssECI	CCNNGG	2 cut(s)	163, 706
BssMI	GATC	5 cut(s)	197, 214, 529, 738, 750
BssNI	GRCGYC	1 cut(s)	458
BssSI	CACGAG	2 cut(s)	266, 597
BssT1I	CCWWGG	2 cut(s)	163, 706
Bst2BI	CACGAG	2 cut(s)	266, 597
Bst2UI	CCWGG	1 cut(s)	688
BstACI	GRCGYC	1 cut(s)	458
BstAPI	GCANNNNNTGC	1 cut(s)	132
BstC8I	GCNNGC	3 cut(s)	254, 306, 604
BstDEI	CTNAG	3 cut(s)	390, 713, 806
BstDSI	CCRYGG	1 cut(s)	706
BstF5I	GGATG	1 cut(s)	291
BstH2I	RGCGCY	1 cut(s)	789
BstHHI	GCGC	2 cut(s)	247, 788
BstKTI	GATC	5 cut(s)	200, 217, 532, 741, 753
BstMAI	GTCTC	4 cut(s)	71, 227, 829, 836
BstMBI	GATC	5 cut(s)	197, 214, 529, 738, 750
BstMCI	CGRYCG	1 cut(s)	741
BstMWI	GCNNNNNNNGC	6 cut(s)	132, 253, 262, 279, 383, 667
BstNI	CCWGG	1 cut(s)	688
BstSCI	CCNGG	2 cut(s)	347, 686
BstSFI	CTRYAG	1 cut(s)	615
BstV1I	GCAGC	3 cut(s)	222, 629, 648
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	2 cut(s)	529, 750
BstXI	CCANNNNNNTGG	1 cut(s)	164
BstYI	RGATCY	2 cut(s)	529, 750
BsuRI	GGCC	2 cut(s)	44, 171
BtgI	CCRYGG	1 cut(s)	706
BtrI	CACGTC	1 cut(s)	763
BtsCI	GGATG	1 cut(s)	291
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	3 cut(s)	254, 306, 604
CfoI	GCGC	2 cut(s)	247, 788
Cfr13I	GGNCC	1 cut(s)	690
CseI	GACGC	1 cut(s)	466
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	4 cut(s)	40, 442, 496, 707
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	3 cut(s)	390, 713, 806
DpnI	GATC	5 cut(s)	199, 216, 531, 740, 752
DpnII	GATC	5 cut(s)	197, 214, 529, 738, 750
DrdI	GACNNNNNNGTC	2 cut(s)	479, 583
DseDI	GACNNNNNNGTC	2 cut(s)	479, 583
EaeI	YGGCCR	2 cut(s)	42, 169
Eco130I	CCWWGG	2 cut(s)	163, 706
Eco31I	GGTCTC	2 cut(s)	71, 227
Eco47I	GGWCC	1 cut(s)	690
Eco57I	CTGAAG	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	686
EcoT14I	CCWWGG	2 cut(s)	163, 706
ErhI	CCWWGG	2 cut(s)	163, 706
FaeI	CATG	4 cut(s)	43, 445, 499, 710
FaiI	YATR	9 cut(s)	29, 41, 278, 280, 321, 323, 443, 497, 708
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	4 cut(s)	39, 441, 495, 706
FauI	CCCGC	1 cut(s)	275
FauNDI	CATATG	2 cut(s)	278, 321
Fnu4HI	GCNGC	8 cut(s)	211, 375, 538, 618, 662, 744, 789, 792
FokI	GGATG	1 cut(s)	298
Fsp4HI	GCNGC	8 cut(s)	211, 375, 538, 618, 662, 744, 789, 792
GlaI	GCGC	2 cut(s)	246, 787
GluI	GCNGC	8 cut(s)	211, 375, 538, 618, 662, 744, 789, 792
GsaI	CCCAGC	2 cut(s)	209, 651
HaeII	RGCGCY	1 cut(s)	789
HaeIII	GGCC	2 cut(s)	44, 171
HapII	CCGG	2 cut(s)	348, 527
HgaI	GACGC	1 cut(s)	466
HhaI	GCGC	2 cut(s)	247, 788
Hin1I	GRCGYC	1 cut(s)	458
Hin1II	CATG	4 cut(s)	43, 445, 499, 710
Hin6I	GCGC	2 cut(s)	245, 786
HinP1I	GCGC	2 cut(s)	245, 786
HindIII	AAGCTT	2 cut(s)	306, 835
HinfI	GANTC	4 cut(s)	181, 221, 394, 549
HpaII	CCGG	2 cut(s)	348, 527
HphI	GGTGA	3 cut(s)	439, 673, 819
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	2 cut(s)	54, 589
Hpy188III	TCNNGA	3 cut(s)	20, 218, 464
Hpy8I	GTNNAC	1 cut(s)	118
Hpy99I	CGWCG	2 cut(s)	106, 767
HpyAV	CCTTC	3 cut(s)	321, 378, 472
HpyCH4IV	ACGT	1 cut(s)	762
HpyCH4V	TGCA	4 cut(s)	126, 135, 617, 731
HpyF10VI	GCNNNNNNNGC	6 cut(s)	132, 253, 262, 279, 383, 667
HpyF3I	CTNAG	3 cut(s)	390, 713, 806
HpySE526I	ACGT	1 cut(s)	762
Hsp92I	GRCGYC	1 cut(s)	458
Hsp92II	CATG	4 cut(s)	43, 445, 499, 710
HspAI	GCGC	2 cut(s)	245, 786
Kzo9I	GATC	5 cut(s)	197, 214, 529, 738, 750
LmnI	GCTCC	4 cut(s)	63, 278, 505, 611
Lsp1109I	GCAGC	3 cut(s)	222, 629, 648
LweI	GCATC	1 cut(s)	45
MaeII	ACGT	1 cut(s)	762
MaeIII	GTNAC	2 cut(s)	182, 675
MalI	GATC	5 cut(s)	199, 216, 531, 740, 752
MboI	GATC	5 cut(s)	197, 214, 529, 738, 750
MboII	GAAGA	3 cut(s)	16, 524, 792
MflI	RGATCY	2 cut(s)	529, 750
MhlI	GDGCHC	1 cut(s)	275
MlsI	TGGCCA	2 cut(s)	44, 171
MluCI	AATT	1 cut(s)	143
MluNI	TGGCCA	2 cut(s)	44, 171
MlyI	GAGTC	3 cut(s)	190, 215, 543
MmeI	TCCRAC	1 cut(s)	612
Mox20I	TGGCCA	2 cut(s)	44, 171
MscI	TGGCCA	2 cut(s)	44, 171
Msp20I	TGGCCA	2 cut(s)	44, 171
MspA1I	CMGCKG	2 cut(s)	583, 661
MspI	CCGG	2 cut(s)	348, 527
MspR9I	CCNGG	2 cut(s)	349, 688
MvaI	CCWGG	1 cut(s)	688
MwoI	GCNNNNNNNGC	6 cut(s)	132, 253, 262, 279, 383, 667
NciI	CCSGG	1 cut(s)	349
NcoI	CCATGG	1 cut(s)	706
NdeI	CATATG	2 cut(s)	278, 321
NdeII	GATC	5 cut(s)	197, 214, 529, 738, 750
NlaIII	CATG	4 cut(s)	43, 445, 499, 710
NlaIV	GGNNCC	2 cut(s)	366, 501
NmeAIII	GCCGAG	1 cut(s)	219
NmuCI	GTSAC	2 cut(s)	182, 675
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	394
PkrI	GCNGC	8 cut(s)	212, 376, 539, 619, 663, 745, 790, 793
Ple19I	CGATCG	1 cut(s)	741
PleI	GAGTC	3 cut(s)	189, 215, 543
PpsI	GAGTC	3 cut(s)	189, 215, 543
Psp6I	CCWGG	1 cut(s)	686
PspFI	CCCAGC	2 cut(s)	205, 647
PspGI	CCWGG	1 cut(s)	686
PspN4I	GGNNCC	2 cut(s)	366, 501
PspPI	GGNCC	1 cut(s)	690
PstI	CTGCAG	1 cut(s)	619
PsuI	RGATCY	2 cut(s)	529, 750
PvuI	CGATCG	1 cut(s)	741
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SatI	GCNGC	8 cut(s)	211, 375, 538, 618, 662, 744, 789, 792
Sau3AI	GATC	5 cut(s)	197, 214, 529, 738, 750
Sau96I	GGNCC	1 cut(s)	690
SchI	GAGTC	3 cut(s)	190, 215, 543
ScrFI	CCNGG	2 cut(s)	349, 688
SduI	GDGCHC	1 cut(s)	275
SfaNI	GCATC	1 cut(s)	45
SfcI	CTRYAG	1 cut(s)	615
SinI	GGWCC	1 cut(s)	690
SmlI	CTYRAG	1 cut(s)	567
SmoI	CTYRAG	1 cut(s)	567
Sse9I	AATT	1 cut(s)	143
StyD4I	CCNGG	2 cut(s)	347, 686
StyI	CCWWGG	2 cut(s)	163, 706
TaiI	ACGT	1 cut(s)	765
TaqI	TCGA	2 cut(s)	224, 413
TaqII	GACCGA	1 cut(s)	707
TasI	AATT	1 cut(s)	143
TauI	GCSGC	5 cut(s)	377, 540, 746, 791, 794
TfiI	GAWTC	1 cut(s)	394
TseFI	GTSAC	2 cut(s)	182, 675
TseI	GCWGC	3 cut(s)	210, 617, 661
Tsp45I	GTSAC	2 cut(s)	182, 675
TspDTI	ATGAA	3 cut(s)	17, 87, 356
VpaK11BI	GGWCC	1 cut(s)	690
XcmI	CCANNNNNNNNNTGG	2 cut(s)	164, 283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.