Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002171

Physical Location & Seq

Genomic Coordinates Reverse (-)

8852624 .. 8853175

Gene Structure 552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g14410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAAGAGAACGAGAGAAGAGGTTGTTGGTGTAGACATGGATAAAGTTCTTATGCTGCTATCATATAGGTTAGAAACCAAGTTCAAAAGATGTTCGTCTTCCCCAAATGATGTATTCGAGTGCAAAACTTGCAACCGGAAATTCCCATCGTTCCAAGCTCTTGGTGGCCACAGAGCAAGCCACAAGCCAAGGTCGACGGTAATGGACACCGATCAAGACCCGAAAAGTGAGACCAAATTGATGCAAAGCAAGCTGAAAAAGCACGAGTGCTCCATATGTGGGCTGGTGTTCAGTTCAGGACAAGCTTTGGGGGGTCATATGAGAAGGCATAGCATAGTGAATTCTCGGTTTTCTGCTACCATTCCGGCTAGCAGTGCTTCAAAGATGAAGACTCCGGTACTAATGAGGTCGAATAGTAAGAGGGTAATGCGTTTGGACATGGACCTGAACTTGACGCCTTTAGAGAATGACTTGAAGCTGTTGTTTGGGAATATGGCTCCAAAAGTTGATACTTTGTTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010045 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071289 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

175

Amino Acids

19.62

Weight (kDa)

9.86

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	38 - 63	6e-12	C2H2-type zinc finger
zf-C2H2_6	PF13912	88 - 111	4e-11	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37430 AT3G53600
fragaria_vesca	FvH4_6g14410 FvH4_6g14411
malus_domestica	MD04G1119600.v1.1 MD12G1136900.v1.1
prunus_persica	Prupe.6G249300_v2.0.a1
pyrus_communis	pycom04g10910 pycom12g13140
rosa_chinensis	RchiOBHm_Chr3g0467501 RchiOBHm_Chr3g0467521 RchiOBHm_Chr3g0467531 RchiOBHm_Chr3g0467541
rosa_laevigata	RLG00000024493 RLG00000024494 RLG00000024497 RLG00000024498 RLG00000024500 RLG00000024501
rosa_multiflora	Rmu_co8150280.1_g000001 Rmu_sc0000286.1_g000002 Rmu_sc0000286.1_g000003 Rmu_sc0000286.1_g000005 Rmu_sc0006408.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413620 Rroxscaffold_6G00413630 Rroxscaffold_6G00413640
rosa_rugosa	Rorug03G0087700 Rorug03G0087800 Rorug03G0087900 Rorug03G0087900
rosa_samantha	Rh3AG135700 Rh3AG135800 Rh3BG157300 Rh3BG157400 Rh3BG157500 Rh3BG157600 Rh3CG157400 Rh3CG157500 Rh3DG158300 Rh3DG158400
rosa_wichuraiana	Rw3G012890 Rw3G012900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	33, 194
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	2 cut(s)	140, 340
AcyI	GRCGYC	1 cut(s)	455
AfaI	GTAC	1 cut(s)	399
AfiI	CCNNNNNNNGG	1 cut(s)	279
AgsI	TTSAA	3 cut(s)	85, 381, 475
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AluBI	AGCT	4 cut(s)	158, 253, 305, 478
AluI	AGCT	4 cut(s)	158, 253, 305, 478
Alw21I	GWGCWC	1 cut(s)	272
Alw26I	GTCTC	1 cut(s)	224
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	1 cut(s)	55
ApoI	RAATTY	2 cut(s)	140, 340
AspS9I	GGNCC	1 cut(s)	442
AsuNHI	GCTAGC	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	442
BalI	TGGCCA	1 cut(s)	168
BauI	CACGAG	1 cut(s)	263
BbsI	GAAGAC	2 cut(s)	90, 395
Bbv12I	GWGCWC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	42
BccI	CCATC	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	1 cut(s)	369
BisI	GCNGC	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	442
BmgT120I	GGNCC	1 cut(s)	442
BmiI	GGNNCC	1 cut(s)	498
BmsI	GCATC	1 cut(s)	231
BmtI	GCTAGC	1 cut(s)	372
BpiI	GAAGAC	2 cut(s)	90, 395
BsaHI	GRCGYC	1 cut(s)	455
BsaI	GGTCTC	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	188
BsaWI	WCCGGW	2 cut(s)	135, 394
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	188
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseXI	GCAGC	1 cut(s)	42
BshFI	GGCC	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	272
BsiSI	CCGG	3 cut(s)	136, 365, 395
BslI	CCNNNNNNNGG	1 cut(s)	279
BsmAI	GTCTC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	168
Bso31I	GGTCTC	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp143I	GATC	1 cut(s)	211
BspANI	GGCC	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	498
BspOI	GCTAGC	1 cut(s)	372
BspTNI	GGTCTC	1 cut(s)	224
BssECI	CCNNGG	1 cut(s)	188
BssMI	GATC	1 cut(s)	211
BssNI	GRCGYC	1 cut(s)	455
BssSI	CACGAG	1 cut(s)	263
BssT1I	CCWWGG	1 cut(s)	188
Bst2BI	CACGAG	1 cut(s)	263
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	12
BstACI	GRCGYC	1 cut(s)	455
BstAPI	GCANNNNNTGC	1 cut(s)	129
BstC8I	GCNNGC	3 cut(s)	178, 251, 370
BstKTI	GATC	1 cut(s)	214
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	4 cut(s)	129, 250, 259, 374
BstV1I	GCAGC	1 cut(s)	42
BstV2I	GAAGAC	2 cut(s)	90, 395
BstXI	CCANNNNNNTGG	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	168
BtsI	GCAGTG	1 cut(s)	379
BtsIMutI	CAGTG	1 cut(s)	379
Cac8I	GCNNGC	3 cut(s)	178, 251, 370
Cfr13I	GGNCC	1 cut(s)	442
CseI	GACGC	1 cut(s)	463
Csp6I	GTAC	1 cut(s)	398
CviAII	CATG	2 cut(s)	37, 439
CviQI	GTAC	1 cut(s)	398
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	188
Eco31I	GGTCTC	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	442
EcoRI	GAATTC	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	188
FaeI	CATG	2 cut(s)	40, 442
FatI	CATG	2 cut(s)	36, 438
FauNDI	CATATG	2 cut(s)	275, 318
FblI	GTMKAC	2 cut(s)	33, 194
Fnu4HI	GCNGC	1 cut(s)	56
Fsp4HI	GCNGC	1 cut(s)	56
FspBI	CTAG	1 cut(s)	369
GluI	GCNGC	1 cut(s)	56
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	3 cut(s)	136, 365, 395
HgaI	GACGC	1 cut(s)	463
Hin1I	GRCGYC	1 cut(s)	455
Hin1II	CATG	2 cut(s)	40, 442
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HindIII	AAGCTT	1 cut(s)	303
HinfI	GANTC	1 cut(s)	391
HpaII	CCGG	3 cut(s)	136, 365, 395
Hpy166II	GTNNAC	2 cut(s)	34, 195
Hpy188III	TCNNGA	2 cut(s)	215, 297
Hpy8I	GTNNAC	2 cut(s)	34, 195
Hpy99I	CGWCG	1 cut(s)	199
HpyAV	CCTTC	1 cut(s)	318
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	3 cut(s)	123, 132, 244
HpyF10VI	GCNNNNNNNGC	4 cut(s)	129, 250, 259, 374
Hsp92I	GRCGYC	1 cut(s)	455
Hsp92II	CATG	2 cut(s)	40, 442
Kzo9I	GATC	1 cut(s)	211
LmnI	GCTCC	2 cut(s)	275, 502
LpnPI	CCDG	6 cut(s)	149, 269, 282, 378, 408, 458
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	1 cut(s)	369
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MboII	GAAGA	4 cut(s)	16, 29, 90, 400
MhlI	GDGCHC	1 cut(s)	272
MlsI	TGGCCA	1 cut(s)	168
MluCI	AATT	3 cut(s)	140, 236, 340
MluNI	TGGCCA	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	385
MnlI	CCTC	3 cut(s)	13, 399, 414
Mox20I	TGGCCA	1 cut(s)	168
MscI	TGGCCA	1 cut(s)	168
Msp20I	TGGCCA	1 cut(s)	168
MspI	CCGG	3 cut(s)	136, 365, 395
MwoI	GCNNNNNNNGC	4 cut(s)	129, 250, 259, 374
NdeI	CATATG	2 cut(s)	275, 318
NdeII	GATC	1 cut(s)	211
NheI	GCTAGC	1 cut(s)	368
NlaIII	CATG	2 cut(s)	40, 442
NlaIV	GGNNCC	1 cut(s)	498
PkrI	GCNGC	1 cut(s)	57
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
PspN4I	GGNNCC	1 cut(s)	498
PspPI	GGNCC	1 cut(s)	442
RsaI	GTAC	1 cut(s)	399
RsaNI	GTAC	1 cut(s)	398
SalI	GTCGAC	1 cut(s)	193
SatI	GCNGC	1 cut(s)	56
Sau3AI	GATC	1 cut(s)	211
Sau96I	GGNCC	1 cut(s)	442
SchI	GAGTC	1 cut(s)	385
SduI	GDGCHC	1 cut(s)	272
SetI	ASST	9 cut(s)	24, 71, 160, 194, 255, 307, 410, 447, 480
SfaNI	GCATC	1 cut(s)	231
SinI	GGWCC	1 cut(s)	442
Sse9I	AATT	3 cut(s)	140, 236, 340
SspMI	CTAG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	188
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	3 cut(s)	117, 194, 410
TasI	AATT	3 cut(s)	140, 236, 340
TscAI	CASTG	1 cut(s)	379
TseI	GCWGC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	17, 401, 510
TspRI	CASTG	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	442
XapI	RAATTY	2 cut(s)	140, 340
XcmI	CCANNNNNNNNNTGG	2 cut(s)	161, 280
XmiI	GTMKAC	2 cut(s)	33, 194
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.