Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002171

Physical Location & Seq

Genomic Coordinates Forward (+)

19875375 .. 19876177

Gene Structure 803 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G53600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAAGAGAGACCGGTCCGATTACGAAGAATCCATGAAGCATATAGACATAGTAGAAAGTCTAATGATGTTATCTCGAAGTTTCGTGGTCAAACAAATCGATGTAAAGCAATCTACCGGAAGCAAAACGAACCATAATAACCACTTCGAATGCAAAACGTGTAACCGGAAATTTGATTCCTTCCAAGCTCTTGGAGGTCATAGAGCTAGCCACAAGAAACCTAAGCTGATCGTTGACCAAGAACAGGTGAAGCATCGTAACAAAGAGAATGATATGCATAAGTGTACAATTTGCGATCAAATGTTTGGGACCGGTCAAGCTCTAGGCGGTCACATGAGAAAGCATAGGACGAGCATGATAACCGAGCAATCGATTGTCCCTTCTGTGGTTTATTCCAGACCGGTTTTTAATCGTTGCAGTAGCAGCAAGGAGATCTTGGACTTAAATCTAACTCCATTGGAAAATGATCTTGTGTTAATCTTTGGGAAGAATTTGGTTCCACAAATTGATTTGAAGTTTGTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010045 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071289 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

175

Amino Acids

20.15

Weight (kDa)

9.24

Isoelectric Point (pI)

56.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	48 - 74	9.8e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	93 - 117	2.6e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37430 AT3G53600
fragaria_vesca	FvH4_6g14410 FvH4_6g14411
malus_domestica	MD04G1119600.v1.1 MD12G1136900.v1.1
prunus_persica	Prupe.6G249300_v2.0.a1
pyrus_communis	pycom04g10910 pycom12g13140
rosa_chinensis	RchiOBHm_Chr3g0467501 RchiOBHm_Chr3g0467521 RchiOBHm_Chr3g0467531 RchiOBHm_Chr3g0467541
rosa_laevigata	RLG00000024493 RLG00000024494 RLG00000024497 RLG00000024498 RLG00000024500 RLG00000024501
rosa_multiflora	Rmu_co8150280.1_g000001 Rmu_sc0000286.1_g000002 Rmu_sc0000286.1_g000003 Rmu_sc0000286.1_g000005 Rmu_sc0006408.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413620 Rroxscaffold_6G00413630 Rroxscaffold_6G00413640
rosa_rugosa	Rorug03G0087700 Rorug03G0087800 Rorug03G0087900 Rorug03G0087900
rosa_samantha	Rh3AG135700 Rh3AG135800 Rh3BG157300 Rh3BG157400 Rh3BG157500 Rh3BG157600 Rh3CG157400 Rh3CG157500 Rh3DG158300 Rh3DG158400
rosa_wichuraiana	Rw3G012890 Rw3G012900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	327
AcsI	RAATTY	2 cut(s)	170, 490
AfaI	GTAC	1 cut(s)	286
AfiI	CCNNNNNNNGG	2 cut(s)	244, 385
AflIII	ACRYGT	1 cut(s)	158
AgeI	ACCGGT	3 cut(s)	12, 311, 400
AgsI	TTSAA	1 cut(s)	514
AluBI	AGCT	4 cut(s)	188, 206, 226, 320
AluI	AGCT	4 cut(s)	188, 206, 226, 320
Alw26I	GTCTC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	423
ApoI	RAATTY	2 cut(s)	170, 490
AsiGI	ACCGGT	3 cut(s)	12, 311, 400
AspS9I	GGNCC	2 cut(s)	15, 309
AsuHPI	GGTGA	1 cut(s)	259
AsuII	TTCGAA	1 cut(s)	147
AsuNHI	GCTAGC	1 cut(s)	206
AvaII	GGWCC	2 cut(s)	15, 309
BbvI	GCAGC	1 cut(s)	435
BcoDI	GTCTC	1 cut(s)	3
BfaI	CTAG	2 cut(s)	207, 323
BglII	AGATCT	1 cut(s)	432
BisI	GCNGC	1 cut(s)	424
BlsI	GCNGC	1 cut(s)	425
Bme18I	GGWCC	2 cut(s)	15, 309
BmgT120I	GGNCC	2 cut(s)	15, 309
BmiI	GGNNCC	2 cut(s)	310, 498
BmsI	GCATC	1 cut(s)	262
BmtI	GCTAGC	1 cut(s)	210
Bpu10I	CCTNAGC	1 cut(s)	222
Bpu14I	TTCGAA	1 cut(s)	147
Bsa29I	ATCGAT	2 cut(s)	99, 371
BsaI	GGTCTC	1 cut(s)	3
BsaWI	WCCGGW	5 cut(s)	12, 116, 165, 311, 400
Bsc4I	CCNNNNNNNGG	2 cut(s)	244, 385
Bse118I	RCCGGY	3 cut(s)	12, 311, 400
BseCI	ATCGAT	2 cut(s)	99, 371
BseLI	CCNNNNNNNGG	2 cut(s)	244, 385
BseXI	GCAGC	1 cut(s)	435
BshTI	ACCGGT	3 cut(s)	12, 311, 400
BshVI	ATCGAT	2 cut(s)	99, 371
BsiSI	CCGG	5 cut(s)	13, 117, 166, 312, 401
BslFI	GGGAC	2 cut(s)	322, 362
BslI	CCNNNNNNNGG	2 cut(s)	244, 385
BsmAI	GTCTC	1 cut(s)	3
BsmFI	GGGAC	2 cut(s)	322, 362
BsmI	GAATGC	1 cut(s)	155
Bso31I	GGTCTC	1 cut(s)	3
Bsp119I	TTCGAA	1 cut(s)	147
Bsp1407I	TGTACA	1 cut(s)	284
Bsp143I	GATC	4 cut(s)	228, 295, 432, 466
BspACI	CCGC	1 cut(s)	327
BspDI	ATCGAT	2 cut(s)	99, 371
BspLI	GGNNCC	2 cut(s)	310, 498
BspOI	GCTAGC	1 cut(s)	210
BspT104I	TTCGAA	1 cut(s)	147
BspTNI	GGTCTC	1 cut(s)	3
BsrFI	RCCGGY	3 cut(s)	12, 311, 400
BsrGI	TGTACA	1 cut(s)	284
BssAI	RCCGGY	3 cut(s)	12, 311, 400
BssMI	GATC	4 cut(s)	228, 295, 432, 466
BstAUI	TGTACA	1 cut(s)	284
BstBI	TTCGAA	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	208
BstDEI	CTNAG	1 cut(s)	222
BstKTI	GATC	4 cut(s)	231, 298, 435, 469
BstMAI	GTCTC	1 cut(s)	3
BstMBI	GATC	4 cut(s)	228, 295, 432, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	423
BstV1I	GCAGC	1 cut(s)	435
BstX2I	RGATCY	1 cut(s)	432
BstXI	CCANNNNNNTGG	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	432
Bsu15I	ATCGAT	2 cut(s)	99, 371
BsuTUI	ATCGAT	2 cut(s)	99, 371
Cac8I	GCNNGC	1 cut(s)	208
Cfr10I	RCCGGY	3 cut(s)	12, 311, 400
Cfr13I	GGNCC	2 cut(s)	15, 309
ClaI	ATCGAT	2 cut(s)	99, 371
CpoI	CGGWCCG	1 cut(s)	15
Csp6I	GTAC	1 cut(s)	285
CspAI	ACCGGT	3 cut(s)	12, 311, 400
CspI	CGGWCCG	1 cut(s)	15
CviAII	CATG	3 cut(s)	34, 334, 355
CviJI	RGCY	5 cut(s)	188, 206, 210, 226, 320
CviKI_1	RGCY	5 cut(s)	188, 206, 210, 226, 320
CviQI	GTAC	1 cut(s)	285
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	4 cut(s)	230, 297, 434, 468
DpnII	GATC	4 cut(s)	228, 295, 432, 466
Eco31I	GGTCTC	1 cut(s)	3
Eco47I	GGWCC	2 cut(s)	15, 309
EcoT22I	ATGCAT	1 cut(s)	279
FaeI	CATG	3 cut(s)	37, 337, 358
FalI	AAGNNNNNCTT	2 cut(s)	419, 451
FaqI	GGGAC	2 cut(s)	322, 362
FatI	CATG	3 cut(s)	33, 333, 354
Fnu4HI	GCNGC	1 cut(s)	424
Fsp4HI	GCNGC	1 cut(s)	424
FspBI	CTAG	2 cut(s)	207, 323
GluI	GCNGC	1 cut(s)	424
HapII	CCGG	5 cut(s)	13, 117, 166, 312, 401
Hin1II	CATG	3 cut(s)	37, 337, 358
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	2 cut(s)	29, 176
HpaII	CCGG	5 cut(s)	13, 117, 166, 312, 401
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	2 cut(s)	235, 285
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	2 cut(s)	75, 396
Hpy8I	GTNNAC	2 cut(s)	235, 285
HpyAV	CCTTC	2 cut(s)	190, 390
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	3 cut(s)	153, 277, 417
HpyF10VI	GCNNNNNNNGC	1 cut(s)	423
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	1 cut(s)	158
Hsp92II	CATG	3 cut(s)	37, 337, 358
Kzo9I	GATC	4 cut(s)	228, 295, 432, 466
LpnPI	CCDG	7 cut(s)	26, 130, 179, 230, 325, 409, 414
Lsp1109I	GCAGC	1 cut(s)	435
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	2 cut(s)	207, 323
MaeII	ACGT	1 cut(s)	158
MaeIII	GTNAC	3 cut(s)	161, 257, 329
MalI	GATC	4 cut(s)	230, 297, 434, 468
MboI	GATC	4 cut(s)	228, 295, 432, 466
MboII	GAAGA	3 cut(s)	16, 38, 499
MflI	RGATCY	1 cut(s)	432
MluCI	AATT	5 cut(s)	170, 288, 490, 504, 523
MnlI	CCTC	1 cut(s)	188
Mph1103I	ATGCAT	1 cut(s)	279
MseI	TTAA	3 cut(s)	408, 443, 476
MspI	CCGG	5 cut(s)	13, 117, 166, 312, 401
Mva1269I	GAATGC	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	423
NdeII	GATC	4 cut(s)	228, 295, 432, 466
NheI	GCTAGC	1 cut(s)	206
NlaIII	CATG	3 cut(s)	37, 337, 358
NlaIV	GGNNCC	2 cut(s)	310, 498
NmuCI	GTSAC	1 cut(s)	329
NsiI	ATGCAT	1 cut(s)	279
NspV	TTCGAA	1 cut(s)	147
PctI	GAATGC	1 cut(s)	155
PfeI	GAWTC	2 cut(s)	29, 176
PinAI	ACCGGT	3 cut(s)	12, 311, 400
PkrI	GCNGC	1 cut(s)	425
PspN4I	GGNNCC	2 cut(s)	310, 498
PspPI	GGNCC	2 cut(s)	15, 309
PsuI	RGATCY	1 cut(s)	432
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
Rsr2I	CGGWCCG	1 cut(s)	15
RsrII	CGGWCCG	1 cut(s)	15
SaqAI	TTAA	3 cut(s)	408, 443, 476
SatI	GCNGC	1 cut(s)	424
Sau3AI	GATC	4 cut(s)	228, 295, 432, 466
Sau96I	GGNCC	2 cut(s)	15, 309
SetI	ASST	8 cut(s)	161, 190, 199, 208, 223, 228, 249, 322
SfaNI	GCATC	1 cut(s)	262
SfuI	TTCGAA	1 cut(s)	147
SinI	GGWCC	2 cut(s)	15, 309
Sse9I	AATT	5 cut(s)	170, 288, 490, 504, 523
SsiI	CCGC	1 cut(s)	327
SspMI	CTAG	2 cut(s)	207, 323
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	4 cut(s)	76, 99, 147, 371
TasI	AATT	5 cut(s)	170, 288, 490, 504, 523
TatI	WGTACW	1 cut(s)	284
TfiI	GAWTC	2 cut(s)	29, 176
Tru1I	TTAA	3 cut(s)	408, 443, 476
Tru9I	TTAA	3 cut(s)	408, 443, 476
TseFI	GTSAC	1 cut(s)	329
TseI	GCWGC	1 cut(s)	423
Tsp45I	GTSAC	1 cut(s)	329
TspDTI	ATGAA	2 cut(s)	17, 50
VpaK11BI	GGWCC	2 cut(s)	15, 309
XapI	RAATTY	2 cut(s)	170, 490
XspI	CTAG	2 cut(s)	207, 323
Zsp2I	ATGCAT	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.