Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0002171

Physical Location & Seq

Genomic Coordinates Forward (+)

13672867 .. 13673424

Gene Structure 558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g10910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGATGAGAGATATGAGAGGAGAAGAATTAGGGTTTGGATTAAAGGGTTTGGACATGGCAAAGTGTCTAATGCTACCATCATTTGGCATGGAGACCAAGTTCAAAACATGTTCAAACGATGTGTTCGAGTGCAAAACTTGCAACCGTACGTTCACGTCGTTCCAAGCTCTCGGCGGTCACAGGGCGAGCCACAAGAGGCCGAGAACATCGATGAGTCGTGATGATGAAGACCGTAAAGATGAACGTGAAAAGGGAAACGACAAGTTCATGGTTATGAACAAGAAGGCTAAAACTCACGAGTGCTCGATATGTGGATTGGAGTTTGGCATGGGACAAGCCTTGGGTGGTCATATGAGGAGGCACAGAGCTTCTAATATGGACATGGCCAGTTTTTCTTATGCTCCTTCAGCTGTCACTTCAAAGATTCCAGTACTGACAAGGTCGAGTAGTAAGAGGGTCATGAGCTTGGAGATGGATTTGAACTTGACACCGTTGGAGAATGACTTAAAATTGTTGTTCGGGAAGATGGCACCAAAAGTTGATGCTTTTGTATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010045 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071289 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

186

Amino Acids

20.81

Weight (kDa)

9.3

Isoelectric Point (pI)

43.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	41 - 67	2.8e-12	C2H2-type zinc finger
zf-C2H2_6	PF13912	99 - 123	3.1e-11	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37430 AT3G53600
fragaria_vesca	FvH4_6g14410 FvH4_6g14411
malus_domestica	MD04G1119600.v1.1 MD12G1136900.v1.1
prunus_persica	Prupe.6G249300_v2.0.a1
pyrus_communis	pycom04g10910 pycom12g13140
rosa_chinensis	RchiOBHm_Chr3g0467501 RchiOBHm_Chr3g0467521 RchiOBHm_Chr3g0467531 RchiOBHm_Chr3g0467541
rosa_laevigata	RLG00000024493 RLG00000024494 RLG00000024497 RLG00000024498 RLG00000024500 RLG00000024501
rosa_multiflora	Rmu_co8150280.1_g000001 Rmu_sc0000286.1_g000002 Rmu_sc0000286.1_g000003 Rmu_sc0000286.1_g000005 Rmu_sc0006408.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413620 Rroxscaffold_6G00413630 Rroxscaffold_6G00413640
rosa_rugosa	Rorug03G0087700 Rorug03G0087800 Rorug03G0087900 Rorug03G0087900
rosa_samantha	Rh3AG135700 Rh3AG135800 Rh3BG157300 Rh3BG157400 Rh3BG157500 Rh3BG157600 Rh3CG157400 Rh3CG157500 Rh3DG158300 Rh3DG158400
rosa_wichuraiana	Rw3G012890 Rw3G012900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	529
AccB7I	CCANNNNNTGG	1 cut(s)	83
AciI	CCGC	1 cut(s)	174
AcoI	YGGCCR	1 cut(s)	384
AcuI	CTGAAG	1 cut(s)	390
AfaI	GTAC	2 cut(s)	148, 432
AfiI	CCNNNNNNNGG	1 cut(s)	83
AflIII	ACRYGT	1 cut(s)	107
AgsI	TTSAA	4 cut(s)	103, 114, 420, 481
AjiI	CACGTC	1 cut(s)	156
AjuI	GAANNNNNNNTTGG	2 cut(s)	18, 50
AloI	GAACNNNNNNTCC	2 cut(s)	83, 115
AluBI	AGCT	4 cut(s)	167, 368, 410, 465
AluI	AGCT	4 cut(s)	167, 368, 410, 465
Alw21I	GWGCWC	1 cut(s)	305
Alw26I	GTCTC	1 cut(s)	86
AoxI	GGCC	2 cut(s)	197, 384
BalI	TGGCCA	1 cut(s)	386
BanI	GGYRCC	1 cut(s)	529
BauI	CACGAG	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	305
BccI	CCATC	3 cut(s)	85, 466, 520
BcoDI	GTCTC	1 cut(s)	86
BmcAI	AGTACT	1 cut(s)	432
BmgBI	CACGTC	1 cut(s)	156
BmiI	GGNNCC	1 cut(s)	531
BmsI	GCATC	1 cut(s)	532
BpiI	GAAGAC	1 cut(s)	234
Bsa29I	ATCGAT	1 cut(s)	209
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	339
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	2 cut(s)	387, 428
BseCI	ATCGAT	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	339
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseNI	ACTGG	2 cut(s)	387, 428
BseRI	GAGGAG	2 cut(s)	33, 370
BshFI	GGCC	2 cut(s)	199, 386
BshNI	GGYRCC	1 cut(s)	529
BshVI	ATCGAT	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	305
BsiWI	CGTACG	1 cut(s)	146
BslFI	GGGAC	1 cut(s)	345
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	345
BsnI	GGCC	2 cut(s)	199, 386
Bso31I	GGTCTC	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	305
BspACI	CCGC	1 cut(s)	174
BspANI	GGCC	2 cut(s)	199, 386
BspDI	ATCGAT	1 cut(s)	209
BspHI	TCATGA	1 cut(s)	459
BspLI	GGNNCC	1 cut(s)	531
BspT107I	GGYRCC	1 cut(s)	529
BspTNI	GGTCTC	1 cut(s)	86
BsrI	ACTGG	2 cut(s)	387, 428
BssECI	CCNNGG	1 cut(s)	339
BssSI	CACGAG	1 cut(s)	296
BssT1I	CCWWGG	1 cut(s)	339
Bst2BI	CACGAG	1 cut(s)	296
Bst4CI	ACNGT	3 cut(s)	146, 233, 492
BstAPI	GCANNNNNTGC	1 cut(s)	138
BstC8I	GCNNGC	1 cut(s)	187
BstMAI	GTCTC	1 cut(s)	86
BstMWI	GCNNNNNNNGC	2 cut(s)	138, 407
BstNSI	RCATGY	1 cut(s)	111
BstV2I	GAAGAC	1 cut(s)	234
Bsu15I	ATCGAT	1 cut(s)	209
BsuRI	GGCC	2 cut(s)	199, 386
BsuTUI	ATCGAT	1 cut(s)	209
BtrI	CACGTC	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	187
CciI	TCATGA	1 cut(s)	459
ClaI	ATCGAT	1 cut(s)	209
Csp6I	GTAC	2 cut(s)	147, 431
CviAII	CATG	7 cut(s)	55, 88, 108, 268, 328, 382, 460
CviJI	RGCY	9 cut(s)	167, 189, 199, 287, 338, 368, 386, 410, 465
CviKI_1	RGCY	9 cut(s)	167, 189, 199, 287, 338, 368, 386, 410, 465
CviQI	GTAC	2 cut(s)	147, 431
EaeI	YGGCCR	1 cut(s)	384
Eco130I	CCWWGG	1 cut(s)	339
Eco31I	GGTCTC	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	339
FaeI	CATG	7 cut(s)	58, 91, 111, 271, 331, 385, 463
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	7 cut(s)	54, 87, 107, 267, 327, 381, 459
FauNDI	CATATG	1 cut(s)	351
HaeIII	GGCC	2 cut(s)	199, 386
Hin1II	CATG	7 cut(s)	58, 91, 111, 271, 331, 385, 463
HinfI	GANTC	2 cut(s)	214, 424
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188III	TCNNGA	4 cut(s)	218, 296, 460, 520
Hpy8I	GTNNAC	1 cut(s)	153
Hpy99I	CGWCG	1 cut(s)	160
HpyAV	CCTTC	2 cut(s)	277, 414
HpyCH4III	ACNGT	3 cut(s)	146, 233, 492
HpyCH4IV	ACGT	3 cut(s)	149, 155, 244
HpyCH4V	TGCA	2 cut(s)	132, 141
HpyF10VI	GCNNNNNNNGC	2 cut(s)	138, 407
HpySE526I	ACGT	3 cut(s)	149, 155, 244
Hsp92II	CATG	7 cut(s)	58, 91, 111, 271, 331, 385, 463
LmnI	GCTCC	1 cut(s)	406
LpnPI	CCDG	3 cut(s)	166, 400, 441
LweI	GCATC	1 cut(s)	532
MaeII	ACGT	3 cut(s)	149, 155, 244
MaeIII	GTNAC	2 cut(s)	176, 412
MboII	GAAGA	3 cut(s)	35, 239, 535
MhlI	GDGCHC	1 cut(s)	305
MlsI	TGGCCA	1 cut(s)	386
MluCI	AATT	2 cut(s)	26, 509
MluNI	TGGCCA	1 cut(s)	386
MlyI	GAGTC	1 cut(s)	223
MmeI	TCCRAC	1 cut(s)	474
MnlI	CCTC	5 cut(s)	11, 189, 348, 351, 447
Mox20I	TGGCCA	1 cut(s)	386
MscI	TGGCCA	1 cut(s)	386
MseI	TTAA	2 cut(s)	41, 506
MslI	CAYNNNNRTG	1 cut(s)	272
Msp20I	TGGCCA	1 cut(s)	386
MspA1I	CMGCKG	1 cut(s)	410
MwoI	GCNNNNNNNGC	2 cut(s)	138, 407
NdeI	CATATG	1 cut(s)	351
NlaIII	CATG	7 cut(s)	58, 91, 111, 271, 331, 385, 463
NlaIV	GGNNCC	1 cut(s)	531
NmeAIII	GCCGAG	2 cut(s)	150, 225
NmuCI	GTSAC	2 cut(s)	176, 412
NspI	RCATGY	1 cut(s)	111
PagI	TCATGA	1 cut(s)	459
PciI	ACATGT	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 155
PfeI	GAWTC	1 cut(s)	424
Pfl23II	CGTACG	1 cut(s)	146
PflFI	GACNNNGTC	1 cut(s)	439
PflMI	CCANNNNNTGG	1 cut(s)	83
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
PscI	ACATGT	1 cut(s)	107
PspLI	CGTACG	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	531
PsyI	GACNNNGTC	1 cut(s)	439
PvuII	CAGCTG	1 cut(s)	410
RsaI	GTAC	2 cut(s)	148, 432
RsaNI	GTAC	2 cut(s)	147, 431
RseI	CAYNNNNRTG	1 cut(s)	272
SaqAI	TTAA	2 cut(s)	41, 506
ScaI	AGTACT	1 cut(s)	432
SchI	GAGTC	1 cut(s)	223
SduI	GDGCHC	1 cut(s)	305
SetI	ASST	8 cut(s)	152, 158, 169, 247, 370, 412, 443, 467
SfaNI	GCATC	1 cut(s)	532
SmiMI	CAYNNNNRTG	1 cut(s)	272
Sse9I	AATT	2 cut(s)	26, 509
SsiI	CCGC	1 cut(s)	174
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	3 cut(s)	146, 233, 492
TaiI	ACGT	3 cut(s)	152, 158, 247
TaqI	TCGA	4 cut(s)	126, 209, 305, 443
TasI	AATT	2 cut(s)	26, 509
TatI	WGTACW	1 cut(s)	430
TfiI	GAWTC	1 cut(s)	424
Tru1I	TTAA	2 cut(s)	41, 506
Tru9I	TTAA	2 cut(s)	41, 506
TseFI	GTSAC	2 cut(s)	176, 412
Tsp45I	GTSAC	2 cut(s)	176, 412
TspDTI	ATGAA	4 cut(s)	240, 255, 256, 290
Tth111I	GACNNNGTC	1 cut(s)	439
Van91I	CCANNNNNTGG	1 cut(s)	83
XceI	RCATGY	1 cut(s)	111
ZrmI	AGTACT	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.