Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002171

Physical Location & Seq

Genomic Coordinates Forward (+)

36418285 .. 36447287

Gene Structure 29003 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024497

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAAGAGAACTACAGAAGAGGTTGTTGGTGTAAACATGGAAAAAGTTCTTATGCTACTATCGTGTAGGTTAGAGACCAAGTTCAAAAGATGTTCATCTTCCCCAAAGGATGTGTTCGAGTGCAAAACCTGCAAACGCCAATTCCCGTCTTTCCAAGCTCTTGGTGGTCACAGAGCAAGCCACAAGAGGCCGAGAACGTTAATGGGTAGTGATCAAGATCCGAAAAGTGAGACAGAATCGGGGAATGTCAAGACGAAAAAGCACGAGTGCTCCATATGCGGGCTGGAGTTTAGTTCGGGACAAGCGTTGGGGGGTCATATGAGAAGGCATAGAATGACGAATGCTGGGTCTAGTTCTCCAGTTCCTGCAGCTGCGGCAGTTGCTGGTGCCTCGAAGATTCCGGTGCTAATGAGGTTGAATAGTAAGAGGGTGGTGTTTTTGGACATGGATCTCAACCTGACGCCTTTAGAGAATGACTTGAAGTTGTTGTTTGGGAATTGGGAATATGGCACCAAATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010045 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071289 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

174

Amino Acids

19.16

Weight (kDa)

9.55

Isoelectric Point (pI)

51.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	38 - 64	1e-12	C2H2-type zinc finger
zf-C2H2_6	PF13912	88 - 111	2.8e-11	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37430 AT3G53600
fragaria_vesca	FvH4_6g14410 FvH4_6g14411
malus_domestica	MD04G1119600.v1.1 MD12G1136900.v1.1
prunus_persica	Prupe.6G249300_v2.0.a1
pyrus_communis	pycom04g10910 pycom12g13140
rosa_chinensis	RchiOBHm_Chr3g0467501 RchiOBHm_Chr3g0467521 RchiOBHm_Chr3g0467531 RchiOBHm_Chr3g0467541
rosa_laevigata	RLG00000024493 RLG00000024494 RLG00000024497 RLG00000024498 RLG00000024500 RLG00000024501
rosa_multiflora	Rmu_co8150280.1_g000001 Rmu_sc0000286.1_g000002 Rmu_sc0000286.1_g000003 Rmu_sc0000286.1_g000005 Rmu_sc0006408.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413620 Rroxscaffold_6G00413630 Rroxscaffold_6G00413640
rosa_rugosa	Rorug03G0087700 Rorug03G0087800 Rorug03G0087900 Rorug03G0087900
rosa_samantha	Rh3AG135700 Rh3AG135800 Rh3BG157300 Rh3BG157400 Rh3BG157500 Rh3BG157600 Rh3CG157400 Rh3CG157500 Rh3DG158300 Rh3DG158400
rosa_wichuraiana	Rw3G012890 Rw3G012900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	137
AccB1I	GGYRCC	2 cut(s)	386, 509
AciI	CCGC	2 cut(s)	279, 374
AclI	AACGTT	1 cut(s)	197
AclWI	GGATC	2 cut(s)	212, 456
AcyI	GRCGYC	1 cut(s)	461
AfiI	CCNNNNNNNGG	1 cut(s)	279
AgsI	TTSAA	3 cut(s)	85, 418, 481
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AluBI	AGCT	2 cut(s)	158, 371
AluI	AGCT	2 cut(s)	158, 371
Alw21I	GWGCWC	1 cut(s)	272
Alw26I	GTCTC	2 cut(s)	68, 224
AlwI	GGATC	2 cut(s)	212, 456
AlwNI	CAGNNNCTG	2 cut(s)	365, 383
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	2 cut(s)	368, 371
ArsI	GACNNNNNNTTYG	2 cut(s)	332, 364
Asp700I	GAANNNNTTC	1 cut(s)	45
BanI	GGYRCC	2 cut(s)	386, 509
BauI	CACGAG	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	272
BbvI	GCAGC	2 cut(s)	358, 380
BclI	TGATCA	1 cut(s)	211
BcoDI	GTCTC	2 cut(s)	68, 224
BfaI	CTAG	1 cut(s)	351
BfmI	CTRYAG	2 cut(s)	12, 366
BfuAI	ACCTGC	1 cut(s)	137
BisI	GCNGC	3 cut(s)	369, 372, 375
BlsI	GCNGC	3 cut(s)	370, 373, 376
BmiI	GGNNCC	2 cut(s)	388, 511
BpmI	CTGGAG	2 cut(s)	305, 342
BsaBI	GATNNNNATC	2 cut(s)	94, 216
BsaHI	GRCGYC	1 cut(s)	461
BsaI	GGTCTC	1 cut(s)	68
BsaWI	WCCGGW	1 cut(s)	400
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
Bse1I	ACTGG	1 cut(s)	359
Bse8I	GATNNNNATC	2 cut(s)	94, 216
BseGI	GGATG	1 cut(s)	115
BseJI	GATNNNNATC	2 cut(s)	94, 216
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	359
BseXI	GCAGC	2 cut(s)	358, 380
BseYI	CCCAGC	1 cut(s)	344
BshFI	GGCC	1 cut(s)	190
BshNI	GGYRCC	2 cut(s)	386, 509
BsiHKAI	GWGCWC	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	401
BslFI	GGGAC	1 cut(s)	312
BslI	CCNNNNNNNGG	1 cut(s)	279
BsmAI	GTCTC	2 cut(s)	68, 224
BsmFI	GGGAC	1 cut(s)	312
BsmI	GAATGC	1 cut(s)	346
BsnI	GGCC	1 cut(s)	190
Bso31I	GGTCTC	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp143I	GATC	3 cut(s)	211, 217, 448
BspACI	CCGC	2 cut(s)	279, 374
BspANI	GGCC	1 cut(s)	190
BspLI	GGNNCC	2 cut(s)	388, 511
BspMAI	CTGCAG	1 cut(s)	370
BspMI	ACCTGC	1 cut(s)	137
BspPI	GGATC	2 cut(s)	212, 456
BspT107I	GGYRCC	2 cut(s)	386, 509
BspTNI	GGTCTC	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	359
BssMI	GATC	3 cut(s)	211, 217, 448
BssNI	GRCGYC	1 cut(s)	461
BssSI	CACGAG	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	263
Bst6I	CTCTTC	1 cut(s)	12
BstACI	GRCGYC	1 cut(s)	461
BstAPI	GCANNNNNTGC	2 cut(s)	129, 516
BstC8I	GCNNGC	2 cut(s)	178, 281
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	3 cut(s)	214, 220, 451
BstMAI	GTCTC	2 cut(s)	68, 224
BstMBI	GATC	3 cut(s)	211, 217, 448
BstMWI	GCNNNNNNNGC	5 cut(s)	129, 276, 374, 380, 516
BstSFI	CTRYAG	2 cut(s)	12, 366
BstV1I	GCAGC	2 cut(s)	358, 380
BstX2I	RGATCY	2 cut(s)	217, 448
BstXI	CCANNNNNNTGG	1 cut(s)	161
BstYI	RGATCY	2 cut(s)	217, 448
BsuRI	GGCC	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	115
BveI	ACCTGC	1 cut(s)	137
Cac8I	GCNNGC	2 cut(s)	178, 281
CaiI	CAGNNNCTG	2 cut(s)	365, 383
CseI	GACGC	1 cut(s)	469
CviAII	CATG	2 cut(s)	37, 445
CviJI	RGCY	5 cut(s)	158, 180, 190, 283, 371
CviKI_1	RGCY	5 cut(s)	158, 180, 190, 283, 371
DpnI	GATC	3 cut(s)	213, 219, 450
DpnII	GATC	3 cut(s)	211, 217, 448
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco31I	GGTCTC	1 cut(s)	68
FaeI	CATG	2 cut(s)	40, 448
FaiI	YATR	9 cut(s)	38, 53, 275, 277, 318, 320, 330, 446, 507
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	2 cut(s)	36, 444
FauI	CCCGC	1 cut(s)	272
FauNDI	CATATG	2 cut(s)	275, 318
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	3 cut(s)	369, 372, 375
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	3 cut(s)	369, 372, 375
FspBI	CTAG	1 cut(s)	351
GluI	GCNGC	3 cut(s)	369, 372, 375
GsaI	CCCAGC	1 cut(s)	348
GsuI	CTGGAG	2 cut(s)	305, 342
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	1 cut(s)	401
HgaI	GACGC	1 cut(s)	469
Hin1I	GRCGYC	1 cut(s)	461
Hin1II	CATG	2 cut(s)	40, 448
HinfI	GANTC	2 cut(s)	236, 397
HpaII	CCGG	1 cut(s)	401
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	3 cut(s)	215, 250, 297
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	1 cut(s)	318
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	3 cut(s)	123, 132, 368
HpyF10VI	GCNNNNNNNGC	5 cut(s)	129, 276, 374, 380, 516
HpySE526I	ACGT	1 cut(s)	197
Hsp92I	GRCGYC	1 cut(s)	461
Hsp92II	CATG	2 cut(s)	40, 448
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	211, 217, 448
LmnI	GCTCC	1 cut(s)	275
LpnPI	CCDG	8 cut(s)	142, 269, 330, 369, 372, 378, 414, 470
Lsp1109I	GCAGC	2 cut(s)	358, 380
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	1 cut(s)	197
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	3 cut(s)	213, 219, 450
MboI	GATC	3 cut(s)	211, 217, 448
MboII	GAAGA	4 cut(s)	16, 29, 90, 406
MflI	RGATCY	2 cut(s)	217, 448
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	2 cut(s)	140, 496
MnlI	CCTC	5 cut(s)	13, 180, 400, 405, 420
MroXI	GAANNNNTTC	1 cut(s)	45
MseI	TTAA	1 cut(s)	200
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	1 cut(s)	401
Mva1269I	GAATGC	1 cut(s)	346
MwoI	GCNNNNNNNGC	5 cut(s)	129, 276, 374, 380, 516
NdeI	CATATG	2 cut(s)	275, 318
NdeII	GATC	3 cut(s)	211, 217, 448
NlaIII	CATG	2 cut(s)	40, 448
NlaIV	GGNNCC	2 cut(s)	388, 511
NmeAIII	GCCGAG	1 cut(s)	216
NmuCI	GTSAC	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	1 cut(s)	302
PctI	GAATGC	1 cut(s)	346
PdmI	GAANNNNTTC	1 cut(s)	45
PfeI	GAWTC	2 cut(s)	236, 397
PkrI	GCNGC	3 cut(s)	370, 373, 376
Psp1406I	AACGTT	1 cut(s)	197
PspFI	CCCAGC	1 cut(s)	344
PspN4I	GGNNCC	2 cut(s)	388, 511
PstI	CTGCAG	1 cut(s)	370
PstNI	CAGNNNCTG	2 cut(s)	365, 383
PsuI	RGATCY	2 cut(s)	217, 448
PvuII	CAGCTG	1 cut(s)	371
SaqAI	TTAA	1 cut(s)	200
SatI	GCNGC	3 cut(s)	369, 372, 375
Sau3AI	GATC	3 cut(s)	211, 217, 448
SduI	GDGCHC	1 cut(s)	272
SetI	ASST	8 cut(s)	24, 71, 131, 160, 200, 373, 416, 459
SfcI	CTRYAG	2 cut(s)	12, 366
Sse9I	AATT	2 cut(s)	140, 496
SsiI	CCGC	2 cut(s)	279, 374
SspMI	CTAG	1 cut(s)	351
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	2 cut(s)	117, 392
TasI	AATT	2 cut(s)	140, 496
TauI	GCSGC	1 cut(s)	377
TfiI	GAWTC	2 cut(s)	236, 397
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	2 cut(s)	368, 371
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	2 cut(s)	17, 84
XcmI	CCANNNNNNNNNTGG	2 cut(s)	161, 280
XmnI	GAANNNNTTC	1 cut(s)	45
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.