Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002171

Physical Location & Seq

Genomic Coordinates Reverse (-)

8855730 .. 8856979

Gene Structure 1250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g14411.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGTCGAAAAGCACCGGGAAGTTGCTCAACCGTGTTTTGGTGCAAGCAATTGAGAGCTTTCAGACTGCACTTTTGGAACTCCTGGAAAAAGCTTCGAAGCTGCGGAGGAGCTTCCTTAGCTCAGTCGCCACCCACGACTCGCCACAGCTGCTTTACAGGTTAGAGACCAAGTTCAAGAAGTGTTCATCGTCGCCAAACCATGTCTACGAGTGCAAAACCTGCAACCGCCAATTCTCATCGTTCCAAGCTCTTGGTGGCCACAGAGCTAGTCACAAGAAGCCGAGAACGTTACCGGGCGGCGATGATGACCTGAAAAGTGAGGCCAAATTGGCGCAAGGCAAGCCGAAAAAGCACGAGTGCTCCATATGTGGGCTGGAGTTTAGTTTGGGGCAAGCTCTTGGGGGTCATATGAGAAGGCACAGGATGATGAACGCCGGGTTTTCTTCTTCAGCTCCTTCTGCGGTTGTTGTTGCTTCGAAGATTCCTGTGCTGATGAGGTCGAATAGTAAGAGGGTGATGTGTTTGGACATGGACTTGAACTTGACGCCTCTGGAAAATGACCTCAAGGTCTTGTTTGGGAACATGGCTCCAAAAGTTGATACTTTGGTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010045 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071289 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

205

Amino Acids

22.48

Weight (kDa)

9.77

Isoelectric Point (pI)

44.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	68 - 94	9.2e-13	C2H2-type zinc finger
zf-C2H2_6	PF13912	118 - 141	3.2e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37430 AT3G53600
fragaria_vesca	FvH4_6g14410 FvH4_6g14411
malus_domestica	MD04G1119600.v1.1 MD12G1136900.v1.1
prunus_persica	Prupe.6G249300_v2.0.a1
pyrus_communis	pycom04g10910 pycom12g13140
rosa_chinensis	RchiOBHm_Chr3g0467501 RchiOBHm_Chr3g0467521 RchiOBHm_Chr3g0467531 RchiOBHm_Chr3g0467541
rosa_laevigata	RLG00000024493 RLG00000024494 RLG00000024497 RLG00000024498 RLG00000024500 RLG00000024501
rosa_multiflora	Rmu_co8150280.1_g000001 Rmu_sc0000286.1_g000002 Rmu_sc0000286.1_g000003 Rmu_sc0000286.1_g000005 Rmu_sc0006408.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413620 Rroxscaffold_6G00413630 Rroxscaffold_6G00413640
rosa_rugosa	Rorug03G0087700 Rorug03G0087800 Rorug03G0087900 Rorug03G0087900
rosa_samantha	Rh3AG135700 Rh3AG135800 Rh3BG157300 Rh3BG157400 Rh3BG157500 Rh3BG157600 Rh3CG157400 Rh3CG157500 Rh3DG158300 Rh3DG158400
rosa_wichuraiana	Rw3G012890 Rw3G012900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	566
Acc36I	ACCTGC	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	204
AciI	CCGC	4 cut(s)	103, 226, 297, 461
AclI	AACGTT	1 cut(s)	287
AcoI	YGGCCR	1 cut(s)	256
AcuI	CTGAAG	1 cut(s)	432
AcyI	GRCGYC	1 cut(s)	545
AfiI	CCNNNNNNNGG	2 cut(s)	37, 369
AgsI	TTSAA	2 cut(s)	175, 538
AjnI	CCWGG	1 cut(s)	81
Alw21I	GWGCWC	1 cut(s)	362
Alw26I	GTCTC	1 cut(s)	158
AoxI	GGCC	2 cut(s)	256, 321
ApeKI	GCWGC	2 cut(s)	100, 148
ArsI	GACNNNNNNTTYG	2 cut(s)	55, 87
AspLEI	GCGC	1 cut(s)	334
AsuC2I	CCSGG	3 cut(s)	16, 294, 436
AsuHPI	GGTGA	1 cut(s)	526
AsuII	TTCGAA	2 cut(s)	95, 476
BaeI	ACNNNNGTAYC	1 cut(s)	591
BalI	TGGCCA	1 cut(s)	258
BauI	CACGAG	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	362
BbvI	GCAGC	2 cut(s)	87, 135
BciT130I	CCWGG	1 cut(s)	83
BcnI	CCSGG	3 cut(s)	16, 294, 436
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	1 cut(s)	267
BfuAI	ACCTGC	1 cut(s)	227
BglI	GCCNNNNNGGC	1 cut(s)	329
BisI	GCNGC	3 cut(s)	101, 149, 298
BlsI	GCNGC	3 cut(s)	102, 150, 299
Bme1390I	CCNGG	4 cut(s)	16, 83, 294, 436
BmiI	GGNNCC	1 cut(s)	588
BmrFI	CCNGG	4 cut(s)	16, 83, 294, 436
BpmI	CTGGAG	1 cut(s)	395
Bpu10I	CCTNAGC	1 cut(s)	116
Bpu14I	TTCGAA	2 cut(s)	95, 476
BpuEI	CTTGAG	1 cut(s)	548
BpuMI	CCSGG	3 cut(s)	16, 294, 436
BsaHI	GRCGYC	1 cut(s)	545
BsaI	GGTCTC	1 cut(s)	158
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 369
BseBI	CCWGG	1 cut(s)	83
BseGI	GGATG	1 cut(s)	429
BseLI	CCNNNNNNNGG	2 cut(s)	37, 369
BseMII	CTCAG	1 cut(s)	135
BseRI	GAGGAG	1 cut(s)	121
BseXI	GCAGC	2 cut(s)	87, 135
BsgI	GTGCAG	1 cut(s)	51
BshFI	GGCC	2 cut(s)	258, 323
BsiHKAI	GWGCWC	1 cut(s)	362
BsiSI	CCGG	3 cut(s)	15, 293, 435
BslI	CCNNNNNNNGG	2 cut(s)	37, 369
BsmAI	GTCTC	1 cut(s)	158
BsnI	GGCC	2 cut(s)	258, 323
Bso31I	GGTCTC	1 cut(s)	158
Bsp119I	TTCGAA	2 cut(s)	95, 476
Bsp1286I	GDGCHC	1 cut(s)	362
BspACI	CCGC	4 cut(s)	103, 226, 297, 461
BspANI	GGCC	2 cut(s)	258, 323
BspCNI	CTCAG	1 cut(s)	134
BspLI	GGNNCC	1 cut(s)	588
BspMI	ACCTGC	1 cut(s)	227
BspT104I	TTCGAA	2 cut(s)	95, 476
BspTNI	GGTCTC	1 cut(s)	158
BssNI	GRCGYC	1 cut(s)	545
BssSI	CACGAG	1 cut(s)	353
Bst2BI	CACGAG	1 cut(s)	353
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	32
BstACI	GRCGYC	1 cut(s)	545
BstAPI	GCANNNNNTGC	1 cut(s)	219
BstBI	TTCGAA	2 cut(s)	95, 476
BstC8I	GCNNGC	3 cut(s)	45, 341, 393
BstDEI	CTNAG	2 cut(s)	116, 121
BstF5I	GGATG	1 cut(s)	429
BstHHI	GCGC	1 cut(s)	334
BstMAI	GTCTC	1 cut(s)	158
BstMWI	GCNNNNNNNGC	7 cut(s)	117, 148, 219, 329, 340, 349, 458
BstNI	CCWGG	1 cut(s)	83
BstSCI	CCNGG	4 cut(s)	14, 81, 292, 434
BstV1I	GCAGC	2 cut(s)	87, 135
BstXI	CCANNNNNNTGG	1 cut(s)	251
BsuRI	GGCC	2 cut(s)	258, 323
BtgZI	GCGATG	1 cut(s)	315
BtsCI	GGATG	1 cut(s)	429
BveI	ACCTGC	1 cut(s)	227
Cac8I	GCNNGC	3 cut(s)	45, 341, 393
CfoI	GCGC	1 cut(s)	334
CseI	GACGC	1 cut(s)	553
CviAII	CATG	3 cut(s)	200, 529, 583
DdeI	CTNAG	2 cut(s)	116, 121
DrdI	GACNNNNNNGTC	1 cut(s)	566
DseDI	GACNNNNNNGTC	1 cut(s)	566
EaeI	YGGCCR	1 cut(s)	256
Eco31I	GGTCTC	1 cut(s)	158
Eco57I	CTGAAG	1 cut(s)	432
EcoRII	CCWGG	1 cut(s)	81
FaeI	CATG	3 cut(s)	203, 532, 586
FaiI	YATR	7 cut(s)	201, 365, 367, 408, 410, 530, 584
FatI	CATG	3 cut(s)	199, 528, 582
FauNDI	CATATG	2 cut(s)	365, 408
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	3 cut(s)	101, 149, 298
FokI	GGATG	1 cut(s)	436
Fsp4HI	GCNGC	3 cut(s)	101, 149, 298
FspBI	CTAG	1 cut(s)	267
GlaI	GCGC	1 cut(s)	333
GluI	GCNGC	3 cut(s)	101, 149, 298
GsuI	CTGGAG	1 cut(s)	395
HaeIII	GGCC	2 cut(s)	258, 323
HapII	CCGG	3 cut(s)	15, 293, 435
HgaI	GACGC	1 cut(s)	553
HhaI	GCGC	1 cut(s)	334
Hin1I	GRCGYC	1 cut(s)	545
Hin1II	CATG	3 cut(s)	203, 532, 586
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HindIII	AAGCTT	1 cut(s)	90
HinfI	GANTC	2 cut(s)	137, 481
HpaII	CCGG	3 cut(s)	15, 293, 435
HphI	GGTGA	1 cut(s)	526
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	1 cut(s)	63
Hpy188III	TCNNGA	2 cut(s)	175, 551
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	1 cut(s)	193
HpyAV	CCTTC	2 cut(s)	408, 465
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	4 cut(s)	43, 68, 213, 222
HpyF10VI	GCNNNNNNNGC	7 cut(s)	117, 148, 219, 329, 340, 349, 458
HpyF3I	CTNAG	2 cut(s)	116, 121
HpySE526I	ACGT	1 cut(s)	287
Hsp92I	GRCGYC	1 cut(s)	545
Hsp92II	CATG	3 cut(s)	203, 532, 586
HspAI	GCGC	1 cut(s)	332
LmnI	GCTCC	4 cut(s)	108, 365, 457, 592
Lsp1109I	GCAGC	2 cut(s)	87, 135
MaeI	CTAG	1 cut(s)	267
MaeII	ACGT	1 cut(s)	287
MaeIII	GTNAC	2 cut(s)	269, 288
MboII	GAAGA	3 cut(s)	435, 438, 490
MfeI	CAATTG	1 cut(s)	48
MhlI	GDGCHC	1 cut(s)	362
MlsI	TGGCCA	1 cut(s)	258
MluCI	AATT	3 cut(s)	48, 230, 326
MluNI	TGGCCA	1 cut(s)	258
MlyI	GAGTC	1 cut(s)	131
MnlI	CCTC	6 cut(s)	99, 313, 489, 504, 558, 572
Mox20I	TGGCCA	1 cut(s)	258
MscI	TGGCCA	1 cut(s)	258
MseI	TTAA	1 cut(s)	613
Msp20I	TGGCCA	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	148
MspI	CCGG	3 cut(s)	15, 293, 435
MspR9I	CCNGG	4 cut(s)	16, 83, 294, 436
MunI	CAATTG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	83
MwoI	GCNNNNNNNGC	7 cut(s)	117, 148, 219, 329, 340, 349, 458
NciI	CCSGG	3 cut(s)	16, 294, 436
NdeI	CATATG	2 cut(s)	365, 408
NlaIII	CATG	3 cut(s)	203, 532, 586
NlaIV	GGNNCC	1 cut(s)	588
NmeAIII	GCCGAG	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	269
NspV	TTCGAA	2 cut(s)	95, 476
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	481
PfoI	TCCNGGA	1 cut(s)	81
PkrI	GCNGC	3 cut(s)	102, 150, 299
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
Psp1406I	AACGTT	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	588
PvuII	CAGCTG	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	613
SatI	GCNGC	3 cut(s)	101, 149, 298
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	4 cut(s)	16, 83, 294, 436
SduI	GDGCHC	1 cut(s)	362
SfuI	TTCGAA	2 cut(s)	95, 476
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	3 cut(s)	48, 230, 326
SsiI	CCGC	4 cut(s)	103, 226, 297, 461
SspMI	CTAG	1 cut(s)	267
StyD4I	CCNGG	4 cut(s)	14, 81, 292, 434
TaaI	ACNGT	1 cut(s)	32
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	4 cut(s)	5, 95, 476, 500
TasI	AATT	3 cut(s)	48, 230, 326
TauI	GCSGC	1 cut(s)	300
TfiI	GAWTC	1 cut(s)	481
Tru1I	TTAA	1 cut(s)	613
Tru9I	TTAA	1 cut(s)	613
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	2 cut(s)	100, 148
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	2 cut(s)	174, 443
XcmI	CCANNNNNNNNNTGG	2 cut(s)	251, 370
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.