Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002171

Physical Location & Seq

Genomic Coordinates Forward (+)

35988969 .. 35989451

Gene Structure 483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00413630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGAAAAAGTTCTTATGCTACTTTCGTGTAGGTTAGAGACCAAGTTCAAAAGATGTTCATCTTCCCCAAAGGATGTGTTCGAGTGCAAAACCTGCAGCCGCCAATTCCCATCGTTCCAAGCTCTTGGTGGCCACAGAGCAAGCCACAAGAAGCCAAGAACGTTAACAGGCAGCGATCAAGACCCAAAAAGTGAGACCAAATTGGTGCAAAGCAAGCCAAAAAAGCACGAGTGTTCCGTATGTGGGTTGGAGTTCAGTTCGGGACAAGCTTTGGGGGGTCATATGAGAAGGCACAGAAAGATGAACGCCCGATTTTATTCTTCAGCTCCTTCTGCTGTTGTTTCGAAGATTCCAGTGCTGTTGAGGTCGAATAGTAAGAGGGTGATGTGTTTGGACATGGACCTGAACTTGACGCCTTTAGAGAATGACTTGAAGTTGCTGTTTGGGAATATGCCACCAAAAATTGATACTTTGATTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010045 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071289 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

160

Amino Acids

17.94

Weight (kDa)

9.79

Isoelectric Point (pI)

55.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	26 - 52	5.5e-13	C2H2-type zinc finger
zf-C2H2_6	PF13912	76 - 100	6.1e-12	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37430 AT3G53600
fragaria_vesca	FvH4_6g14410 FvH4_6g14411
malus_domestica	MD04G1119600.v1.1 MD12G1136900.v1.1
prunus_persica	Prupe.6G249300_v2.0.a1
pyrus_communis	pycom04g10910 pycom12g13140
rosa_chinensis	RchiOBHm_Chr3g0467501 RchiOBHm_Chr3g0467521 RchiOBHm_Chr3g0467531 RchiOBHm_Chr3g0467541
rosa_laevigata	RLG00000024493 RLG00000024494 RLG00000024497 RLG00000024498 RLG00000024500 RLG00000024501
rosa_multiflora	Rmu_co8150280.1_g000001 Rmu_sc0000286.1_g000002 Rmu_sc0000286.1_g000003 Rmu_sc0000286.1_g000005 Rmu_sc0006408.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413620 Rroxscaffold_6G00413630 Rroxscaffold_6G00413640
rosa_rugosa	Rorug03G0087700 Rorug03G0087800 Rorug03G0087900 Rorug03G0087900
rosa_samantha	Rh3AG135700 Rh3AG135800 Rh3BG157300 Rh3BG157400 Rh3BG157500 Rh3BG157600 Rh3CG157400 Rh3CG157500 Rh3DG158300 Rh3DG158400
rosa_wichuraiana	Rw3G012890 Rw3G012900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	101
AciI	CCGC	1 cut(s)	100
AclI	AACGTT	1 cut(s)	161
AcoI	YGGCCR	1 cut(s)	130
AcuI	CTGAAG	1 cut(s)	306
AcyI	GRCGYC	1 cut(s)	413
AfiI	CCNNNNNNNGG	1 cut(s)	243
AgsI	TTSAA	2 cut(s)	49, 433
AluBI	AGCT	3 cut(s)	122, 269, 326
AluI	AGCT	3 cut(s)	122, 269, 326
Alw26I	GTCTC	2 cut(s)	32, 188
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	96, 171
Asp700I	GAANNNNTTC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	400
AsuHPI	GGTGA	1 cut(s)	394
AsuII	TTCGAA	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	400
BalI	TGGCCA	1 cut(s)	132
BauI	CACGAG	1 cut(s)	227
BbvI	GCAGC	2 cut(s)	108, 183
BccI	CCATC	1 cut(s)	118
BcoDI	GTCTC	2 cut(s)	32, 188
BfmI	CTRYAG	1 cut(s)	94
BfuAI	ACCTGC	1 cut(s)	101
BisI	GCNGC	3 cut(s)	97, 100, 172
BlsI	GCNGC	3 cut(s)	98, 101, 173
Bme18I	GGWCC	1 cut(s)	400
BmgT120I	GGNCC	1 cut(s)	400
Bpu14I	TTCGAA	1 cut(s)	344
BsaBI	GATNNNNATC	1 cut(s)	58
BsaHI	GRCGYC	1 cut(s)	413
BsaI	GGTCTC	2 cut(s)	32, 188
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
Bse1I	ACTGG	1 cut(s)	353
Bse8I	GATNNNNATC	1 cut(s)	58
BseGI	GGATG	1 cut(s)	79
BseJI	GATNNNNATC	1 cut(s)	58
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	353
BseXI	GCAGC	2 cut(s)	108, 183
BshFI	GGCC	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	276
BslI	CCNNNNNNNGG	1 cut(s)	243
BsmAI	GTCTC	2 cut(s)	32, 188
BsmFI	GGGAC	1 cut(s)	276
BsnI	GGCC	1 cut(s)	132
Bso31I	GGTCTC	2 cut(s)	32, 188
Bsp119I	TTCGAA	1 cut(s)	344
Bsp143I	GATC	1 cut(s)	175
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	1 cut(s)	132
BspMAI	CTGCAG	1 cut(s)	98
BspMI	ACCTGC	1 cut(s)	101
BspT104I	TTCGAA	1 cut(s)	344
BspTNI	GGTCTC	2 cut(s)	32, 188
BsrI	ACTGG	1 cut(s)	353
BssMI	GATC	1 cut(s)	175
BssNI	GRCGYC	1 cut(s)	413
BssSI	CACGAG	1 cut(s)	227
Bst2BI	CACGAG	1 cut(s)	227
BstACI	GRCGYC	1 cut(s)	413
BstAPI	GCANNNNNTGC	1 cut(s)	93
BstBI	TTCGAA	1 cut(s)	344
BstC8I	GCNNGC	2 cut(s)	142, 215
BstDEI	CTNAG	1 cut(s)	480
BstF5I	GGATG	1 cut(s)	79
BstKTI	GATC	1 cut(s)	178
BstMAI	GTCTC	2 cut(s)	32, 188
BstMBI	GATC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 214, 223, 332
BstSFI	CTRYAG	1 cut(s)	94
BstV1I	GCAGC	2 cut(s)	108, 183
BstXI	CCANNNNNNTGG	1 cut(s)	125
BsuRI	GGCC	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	79
BtsIMutI	CAGTG	1 cut(s)	360
BveI	ACCTGC	1 cut(s)	101
Cac8I	GCNNGC	2 cut(s)	142, 215
Cfr13I	GGNCC	1 cut(s)	400
CseI	GACGC	1 cut(s)	421
CviAII	CATG	1 cut(s)	397
CviJI	RGCY	8 cut(s)	99, 122, 132, 144, 154, 217, 269, 326
CviKI_1	RGCY	8 cut(s)	99, 122, 132, 144, 154, 217, 269, 326
DdeI	CTNAG	1 cut(s)	480
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
EaeI	YGGCCR	1 cut(s)	130
Eco31I	GGTCTC	2 cut(s)	32, 188
Eco47I	GGWCC	1 cut(s)	400
Eco57I	CTGAAG	1 cut(s)	306
FaeI	CATG	1 cut(s)	400
FaiI	YATR	6 cut(s)	17, 241, 282, 284, 398, 452
FaqI	GGGAC	1 cut(s)	276
FatI	CATG	1 cut(s)	396
FauNDI	CATATG	1 cut(s)	282
Fnu4HI	GCNGC	3 cut(s)	97, 100, 172
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	3 cut(s)	97, 100, 172
GluI	GCNGC	3 cut(s)	97, 100, 172
HaeIII	GGCC	1 cut(s)	132
HgaI	GACGC	1 cut(s)	421
Hin1I	GRCGYC	1 cut(s)	413
Hin1II	CATG	1 cut(s)	400
HincII	GTYRAC	1 cut(s)	165
HindII	GTYRAC	1 cut(s)	165
HindIII	AAGCTT	1 cut(s)	267
HinfI	GANTC	1 cut(s)	349
HpaI	GTTAAC	1 cut(s)	165
HphI	GGTGA	1 cut(s)	394
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188III	TCNNGA	2 cut(s)	179, 261
Hpy8I	GTNNAC	1 cut(s)	165
HpyAV	CCTTC	2 cut(s)	282, 339
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	3 cut(s)	87, 96, 208
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 214, 223, 332
HpyF3I	CTNAG	1 cut(s)	480
HpySE526I	ACGT	1 cut(s)	161
Hsp92I	GRCGYC	1 cut(s)	413
Hsp92II	CATG	1 cut(s)	400
KspAI	GTTAAC	1 cut(s)	165
Kzo9I	GATC	1 cut(s)	175
LmnI	GCTCC	1 cut(s)	331
LpnPI	CCDG	4 cut(s)	106, 153, 366, 416
Lsp1109I	GCAGC	2 cut(s)	108, 183
MaeII	ACGT	1 cut(s)	161
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MboII	GAAGA	3 cut(s)	54, 312, 358
MlsI	TGGCCA	1 cut(s)	132
MluCI	AATT	3 cut(s)	104, 200, 462
MluNI	TGGCCA	1 cut(s)	132
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	2 cut(s)	357, 372
Mox20I	TGGCCA	1 cut(s)	132
MroXI	GAANNNNTTC	1 cut(s)	9
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	1 cut(s)	164
Msp20I	TGGCCA	1 cut(s)	132
MwoI	GCNNNNNNNGC	4 cut(s)	93, 214, 223, 332
NdeI	CATATG	1 cut(s)	282
NdeII	GATC	1 cut(s)	175
NlaIII	CATG	1 cut(s)	400
NspV	TTCGAA	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	349
PkrI	GCNGC	3 cut(s)	98, 101, 173
Psp1406I	AACGTT	1 cut(s)	161
PspPI	GGNCC	1 cut(s)	400
PstI	CTGCAG	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	3 cut(s)	97, 100, 172
Sau3AI	GATC	1 cut(s)	175
Sau96I	GGNCC	1 cut(s)	400
SetI	ASST	8 cut(s)	35, 95, 124, 164, 271, 328, 368, 405
SfcI	CTRYAG	1 cut(s)	94
SfuI	TTCGAA	1 cut(s)	344
SinI	GGWCC	1 cut(s)	400
Sse9I	AATT	3 cut(s)	104, 200, 462
SsiI	CCGC	1 cut(s)	100
TaiI	ACGT	1 cut(s)	164
TaqI	TCGA	3 cut(s)	81, 344, 368
TasI	AATT	3 cut(s)	104, 200, 462
TauI	GCSGC	1 cut(s)	102
TfiI	GAWTC	1 cut(s)	349
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TscAI	CASTG	1 cut(s)	360
TseI	GCWGC	2 cut(s)	96, 171
TspDTI	ATGAA	2 cut(s)	48, 317
TspGWI	ACGGA	1 cut(s)	226
TspRI	CASTG	1 cut(s)	360
VpaK11BI	GGWCC	1 cut(s)	400
XcmI	CCANNNNNNNNNTGG	1 cut(s)	125
XmnI	GAANNNNTTC	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.