Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002171

Physical Location & Seq

Genomic Coordinates Forward (+)

15608517 .. 15609074

Gene Structure 558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g13140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGAAGAGAGGTATGACAAGAGAGGAATTAGGGTTTGGAATTAAGGGTTTGGACATGGCAAAGTGTCTAATGCTATTATCATGCGGCATGCAGACCAAAACATGTTCGTCTTCAAACGATGTGTTCGAGTGCAAGACTTGCAATCGGAAGTTCGCGTCATTCCAAGCTCTCGGCGGCCATAGAGCAAGCCACAAGAGGCCGAGAAGATCAACGAGTCATGATGATGAAGACTGTAAAAATGAACCTGAAAAAAGAAGCGATAAGTTGGGGGTGACAAACAAAAAGGCTAAAACACACGAGTGCTTGATATGTGGATCAAAGTTCGGCATGGGACAAGCCTTGGGTGGTCATATGAGGAGGCACAAAGCTTCTAATATGAACACGGTCAGTTTTCCTCATGCTCCTTCAGTTGTTTCGTCGAAGATTCCAGTCTTAACAAGGTCGAATAGTAAAAGAGTTATGAGCTTGGAGATGGATTTGAACTTGACACCATTGGAGAATGACTTGAAGTTATTGTTTGGGAAGATGGCACCAAAAGTTGATGCTTTTGCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010045 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071289 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

186

Amino Acids

20.45

Weight (kDa)

9.67

Isoelectric Point (pI)

55.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	41 - 67	1.6e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	99 - 123	4.1e-08	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37430 AT3G53600
fragaria_vesca	FvH4_6g14410 FvH4_6g14411
malus_domestica	MD04G1119600.v1.1 MD12G1136900.v1.1
prunus_persica	Prupe.6G249300_v2.0.a1
pyrus_communis	pycom04g10910 pycom12g13140
rosa_chinensis	RchiOBHm_Chr3g0467501 RchiOBHm_Chr3g0467521 RchiOBHm_Chr3g0467531 RchiOBHm_Chr3g0467541
rosa_laevigata	RLG00000024493 RLG00000024494 RLG00000024497 RLG00000024498 RLG00000024500 RLG00000024501
rosa_multiflora	Rmu_co8150280.1_g000001 Rmu_sc0000286.1_g000002 Rmu_sc0000286.1_g000003 Rmu_sc0000286.1_g000005 Rmu_sc0006408.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413620 Rroxscaffold_6G00413630 Rroxscaffold_6G00413640
rosa_rugosa	Rorug03G0087700 Rorug03G0087800 Rorug03G0087900 Rorug03G0087900
rosa_samantha	Rh3AG135700 Rh3AG135800 Rh3BG157300 Rh3BG157400 Rh3BG157500 Rh3BG157600 Rh3CG157400 Rh3CG157500 Rh3DG158300 Rh3DG158400
rosa_wichuraiana	Rw3G012890 Rw3G012900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	529
AccII	CGCG	1 cut(s)	155
AciI	CCGC	2 cut(s)	84, 174
AclWI	GGATC	1 cut(s)	322
AcoI	YGGCCR	1 cut(s)	175
AcuI	CTGAAG	1 cut(s)	390
AflIII	ACRYGT	1 cut(s)	101
AgsI	TTSAA	3 cut(s)	114, 481, 508
AjuI	GAANNNNNNNTTGG	2 cut(s)	18, 50
AleI	CACNNNNGTG	1 cut(s)	298
AluBI	AGCT	3 cut(s)	167, 368, 465
AluI	AGCT	3 cut(s)	167, 368, 465
AlwI	GGATC	1 cut(s)	322
AoxI	GGCC	2 cut(s)	175, 197
AsuHPI	GGTGA	1 cut(s)	283
BanI	GGYRCC	1 cut(s)	529
BauI	CACGAG	1 cut(s)	296
BbsI	GAAGAC	2 cut(s)	102, 234
BccI	CCATC	2 cut(s)	466, 520
BisI	GCNGC	2 cut(s)	85, 175
BlsI	GCNGC	2 cut(s)	86, 176
BmiI	GGNNCC	1 cut(s)	531
BmsI	GCATC	1 cut(s)	532
BpiI	GAAGAC	2 cut(s)	102, 234
BsaJI	CCNNGG	1 cut(s)	339
Bse1I	ACTGG	1 cut(s)	428
BseDI	CCNNGG	1 cut(s)	339
BseNI	ACTGG	1 cut(s)	428
BseRI	GAGGAG	1 cut(s)	370
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	2 cut(s)	177, 199
BshNI	GGYRCC	1 cut(s)	529
BslFI	GGGAC	1 cut(s)	345
BsmFI	GGGAC	1 cut(s)	345
BsnI	GGCC	2 cut(s)	177, 199
Bsp143I	GATC	2 cut(s)	206, 314
BspACI	CCGC	2 cut(s)	84, 174
BspANI	GGCC	2 cut(s)	177, 199
BspFNI	CGCG	1 cut(s)	155
BspHI	TCATGA	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	531
BspPI	GGATC	1 cut(s)	322
BspT107I	GGYRCC	1 cut(s)	529
BsrI	ACTGG	1 cut(s)	428
BssECI	CCNNGG	1 cut(s)	339
BssMI	GATC	2 cut(s)	206, 314
BssSI	CACGAG	1 cut(s)	296
BssT1I	CCWWGG	1 cut(s)	339
Bst2BI	CACGAG	1 cut(s)	296
Bst4CI	ACNGT	2 cut(s)	233, 385
BstAPI	GCANNNNNTGC	1 cut(s)	138
BstC8I	GCNNGC	2 cut(s)	89, 187
BstFNI	CGCG	1 cut(s)	155
BstKTI	GATC	2 cut(s)	209, 317
BstMBI	GATC	2 cut(s)	206, 314
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstNSI	RCATGY	2 cut(s)	91, 105
BstUI	CGCG	1 cut(s)	155
BstV2I	GAAGAC	2 cut(s)	102, 234
BsuRI	GGCC	2 cut(s)	177, 199
Cac8I	GCNNGC	2 cut(s)	89, 187
CciI	TCATGA	1 cut(s)	217
CseI	GACGC	1 cut(s)	144
CviAII	CATG	7 cut(s)	55, 81, 88, 102, 218, 328, 398
CviJI	RGCY	8 cut(s)	167, 177, 189, 199, 287, 338, 368, 465
CviKI_1	RGCY	8 cut(s)	167, 177, 189, 199, 287, 338, 368, 465
DpnI	GATC	2 cut(s)	208, 316
DpnII	GATC	2 cut(s)	206, 314
EaeI	YGGCCR	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	339
Eco57I	CTGAAG	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	339
FaeI	CATG	7 cut(s)	58, 84, 91, 105, 221, 331, 401
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	7 cut(s)	54, 80, 87, 101, 217, 327, 397
FauNDI	CATATG	1 cut(s)	351
Fnu4HI	GCNGC	2 cut(s)	85, 175
Fsp4HI	GCNGC	2 cut(s)	85, 175
GluI	GCNGC	2 cut(s)	85, 175
HaeIII	GGCC	2 cut(s)	177, 199
HgaI	GACGC	1 cut(s)	144
Hin1II	CATG	7 cut(s)	58, 84, 91, 105, 221, 331, 401
HindIII	AAGCTT	1 cut(s)	366
HinfI	GANTC	2 cut(s)	214, 424
HphI	GGTGA	1 cut(s)	283
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	1 cut(s)	218
Hpy99I	CGWCG	1 cut(s)	421
HpyAV	CCTTC	1 cut(s)	414
HpyCH4III	ACNGT	2 cut(s)	233, 385
HpyCH4V	TGCA	4 cut(s)	91, 132, 141, 551
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
Hsp92II	CATG	7 cut(s)	58, 84, 91, 105, 221, 331, 401
Kzo9I	GATC	2 cut(s)	206, 314
LmnI	GCTCC	1 cut(s)	406
LpnPI	CCDG	2 cut(s)	258, 441
LweI	GCATC	1 cut(s)	532
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	2 cut(s)	208, 316
MboI	GATC	2 cut(s)	206, 314
MboII	GAAGA	6 cut(s)	16, 102, 216, 239, 433, 535
MluCI	AATT	2 cut(s)	26, 39
MlyI	GAGTC	1 cut(s)	223
MnlI	CCTC	5 cut(s)	16, 189, 348, 351, 405
MseI	TTAA	2 cut(s)	42, 434
MslI	CAYNNNNRTG	2 cut(s)	222, 298
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	138
NdeI	CATATG	1 cut(s)	351
NdeII	GATC	2 cut(s)	206, 314
NlaIII	CATG	7 cut(s)	58, 84, 91, 105, 221, 331, 401
NlaIV	GGNNCC	1 cut(s)	531
NmeAIII	GCCGAG	2 cut(s)	150, 225
NmuCI	GTSAC	1 cut(s)	271
NspI	RCATGY	2 cut(s)	91, 105
OliI	CACNNNNGTG	1 cut(s)	298
PaeI	GCATGC	1 cut(s)	91
PagI	TCATGA	1 cut(s)	217
PciI	ACATGT	1 cut(s)	101
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	424
PkrI	GCNGC	2 cut(s)	86, 176
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
PscI	ACATGT	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	531
RseI	CAYNNNNRTG	2 cut(s)	222, 298
SaqAI	TTAA	2 cut(s)	42, 434
SatI	GCNGC	2 cut(s)	85, 175
Sau3AI	GATC	2 cut(s)	206, 314
SchI	GAGTC	1 cut(s)	223
SetI	ASST	6 cut(s)	13, 169, 247, 370, 443, 467
SfaNI	GCATC	1 cut(s)	532
SmiMI	CAYNNNNRTG	2 cut(s)	222, 298
SphI	GCATGC	1 cut(s)	91
Sse9I	AATT	2 cut(s)	26, 39
SsiI	CCGC	2 cut(s)	84, 174
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	2 cut(s)	233, 385
TaqI	TCGA	3 cut(s)	126, 419, 443
TasI	AATT	2 cut(s)	26, 39
TauI	GCSGC	2 cut(s)	87, 177
TfiI	GAWTC	1 cut(s)	424
Tru1I	TTAA	2 cut(s)	42, 434
Tru9I	TTAA	2 cut(s)	42, 434
TseFI	GTSAC	1 cut(s)	271
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	4 cut(s)	17, 240, 255, 392
XceI	RCATGY	2 cut(s)	91, 105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.