Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002171

Physical Location & Seq

Genomic Coordinates Forward (+)

6853047 .. 6854176

Gene Structure 1130 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0087700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCGGCTGTTTTGGCACTGTTTGTGATGACTTTTGCCATCGTCTTCAGCAACTCAGCTGCTGATCCAGACATGCTTCAAGATATCTGTGTCGCCGACTACGCTTCAGCGGTGAAAATGAATGGTTTCGCTTGCAAGAACGCAGCAAATGCAACAGCAGAGGACTTCTTCTCTGCCGGACTAGCCAAGCCAGGACTCACCAACAACACCTTCGGCTCTCTGGTGACTGCAGCTAATGTCCAGACGATTCCAGGCCTCAACACCCTCGGGGTCTCGCTGGCCCGAATTGACTATGCTCCCGGAGGCATCAACCCACCTCACACTCACCCACGCGCCACCGAGATAGTCTTCGTGCTCGAAGGTTCGTTGGATGTTGGGTTCATTACCACAGCAAACAAGCTCATTTCCAAGACCATTGCCAAGGGTGAAGTGTTTGTGTTCCCAAAGGGGTTAGTTCACTTCCAGAAGAACAATGGCAAGGTCCCTGCTTCCGTGATCGCCGGGTTCAACTCTCAGCTGCAGGGTACCGCCAATATTGCCCTCACATTGTTCGCCGCCTCGCCGCCGGTGGAGGATGATGTGTTGACCAGTACTTTCCAGGTTGGTACTAAAGAGATTAAGAAGATCAAGGCAAAGTTTGCGCCCAAGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010045 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071289 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

217

Amino Acids

22.65

Weight (kDa)

8.52

Isoelectric Point (pI)

26.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	60 - 206	4.5e-50	Cupin
Cupin_2	PF07883	96 - 166	3.3e-11	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37430 AT3G53600
fragaria_vesca	FvH4_6g14410 FvH4_6g14411
malus_domestica	MD04G1119600.v1.1 MD12G1136900.v1.1
prunus_persica	Prupe.6G249300_v2.0.a1
pyrus_communis	pycom04g10910 pycom12g13140
rosa_chinensis	RchiOBHm_Chr3g0467501 RchiOBHm_Chr3g0467521 RchiOBHm_Chr3g0467531 RchiOBHm_Chr3g0467541
rosa_laevigata	RLG00000024493 RLG00000024494 RLG00000024497 RLG00000024498 RLG00000024500 RLG00000024501
rosa_multiflora	Rmu_co8150280.1_g000001 Rmu_sc0000286.1_g000002 Rmu_sc0000286.1_g000003 Rmu_sc0000286.1_g000005 Rmu_sc0006408.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413620 Rroxscaffold_6G00413630 Rroxscaffold_6G00413640
rosa_rugosa	Rorug03G0087700 Rorug03G0087800 Rorug03G0087900 Rorug03G0087900
rosa_samantha	Rh3AG135700 Rh3AG135800 Rh3BG157300 Rh3BG157400 Rh3BG157500 Rh3BG157600 Rh3CG157400 Rh3CG157500 Rh3DG158300 Rh3DG158400
rosa_wichuraiana	Rw3G012890 Rw3G012900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	524
AccB1I	GGYRCC	1 cut(s)	524
AccII	CGCG	1 cut(s)	333
AciI	CCGC	5 cut(s)	5, 110, 528, 555, 563
AclWI	GGATC	1 cut(s)	59
AcuI	CTGAAG	2 cut(s)	31, 90
AfaI	GTAC	3 cut(s)	526, 592, 607
AgsI	TTSAA	2 cut(s)	80, 508
AjnI	CCWGG	3 cut(s)	190, 250, 597
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AloI	GAACNNNNNNTCC	2 cut(s)	362, 394
AluBI	AGCT	4 cut(s)	59, 233, 400, 517
AluI	AGCT	4 cut(s)	59, 233, 400, 517
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	1 cut(s)	277
AlwI	GGATC	1 cut(s)	59
AlwNI	CAGNNNCTG	1 cut(s)	62
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	3 cut(s)	253, 279, 648
ApeKI	GCWGC	4 cut(s)	59, 143, 230, 517
Asp700I	GAANNNNTTC	1 cut(s)	125
Asp718I	GGTACC	1 cut(s)	524
AspLEI	GCGC	2 cut(s)	335, 643
AspS9I	GGNCC	2 cut(s)	280, 481
AsuC2I	CCSGG	2 cut(s)	300, 502
AsuHPI	GGTGA	5 cut(s)	124, 190, 235, 317, 437
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	481
BanI	GGYRCC	1 cut(s)	524
BbsI	GAAGAC	2 cut(s)	37, 340
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	4 cut(s)	46, 155, 242, 504
BccI	CCATC	1 cut(s)	47
BciT130I	CCWGG	3 cut(s)	192, 252, 599
BcnI	CCSGG	2 cut(s)	300, 502
BcoDI	GTCTC	1 cut(s)	277
BfaI	CTAG	2 cut(s)	182, 652
BfmI	CTRYAG	2 cut(s)	228, 518
BisI	GCNGC	7 cut(s)	6, 60, 144, 231, 518, 555, 563
BlsI	GCNGC	7 cut(s)	7, 61, 145, 232, 519, 556, 564
BmcAI	AGTACT	1 cut(s)	592
Bme1390I	CCNGG	5 cut(s)	192, 252, 300, 502, 599
Bme18I	GGWCC	1 cut(s)	481
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	2 cut(s)	280, 481
BmiI	GGNNCC	2 cut(s)	483, 526
BmrFI	CCNGG	5 cut(s)	192, 252, 300, 502, 599
BmsI	GCATC	1 cut(s)	315
BpiI	GAAGAC	2 cut(s)	37, 340
BpuMI	CCSGG	2 cut(s)	300, 502
BsaI	GGTCTC	1 cut(s)	277
BsaJI	CCNNGG	3 cut(s)	265, 420, 645
Bse118I	RCCGGY	1 cut(s)	565
Bse1I	ACTGG	1 cut(s)	588
Bse3DI	GCAATG	1 cut(s)	414
BseBI	CCWGG	3 cut(s)	192, 252, 599
BseDI	CCNNGG	3 cut(s)	265, 420, 645
BseGI	GGATG	2 cut(s)	376, 580
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	2 cut(s)	69, 527
BseNI	ACTGG	1 cut(s)	588
BseXI	GCAGC	4 cut(s)	46, 155, 242, 504
Bsh1236I	CGCG	1 cut(s)	333
BshFI	GGCC	3 cut(s)	255, 281, 650
BshNI	GGYRCC	1 cut(s)	524
BsiHKAI	GWGCWC	1 cut(s)	357
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	4 cut(s)	177, 300, 501, 566
BslFI	GGGAC	1 cut(s)	467
BsmAI	GTCTC	1 cut(s)	277
BsmFI	GGGAC	1 cut(s)	467
BsnI	GGCC	3 cut(s)	255, 281, 650
Bso31I	GGTCTC	1 cut(s)	277
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	3 cut(s)	64, 495, 624
BspACI	CCGC	5 cut(s)	5, 110, 528, 555, 563
BspANI	GGCC	3 cut(s)	255, 281, 650
BspCNI	CTCAG	2 cut(s)	68, 526
BspFNI	CGCG	1 cut(s)	333
BspLI	GGNNCC	2 cut(s)	483, 526
BspMAI	CTGCAG	2 cut(s)	232, 522
BspPI	GGATC	1 cut(s)	59
BspT107I	GGYRCC	1 cut(s)	524
BspTNI	GGTCTC	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	414
BsrFI	RCCGGY	1 cut(s)	565
BsrI	ACTGG	1 cut(s)	588
BssAI	RCCGGY	1 cut(s)	565
BssECI	CCNNGG	3 cut(s)	265, 420, 645
BssMI	GATC	3 cut(s)	64, 495, 624
BssT1I	CCWWGG	2 cut(s)	420, 645
Bst2UI	CCWGG	3 cut(s)	192, 252, 599
Bst4CI	ACNGT	1 cut(s)	21
BstAPI	GCANNNNNTGC	2 cut(s)	149, 638
BstC8I	GCNNGC	2 cut(s)	133, 279
BstDEI	CTNAG	2 cut(s)	55, 513
BstF5I	GGATG	2 cut(s)	376, 580
BstFNI	CGCG	1 cut(s)	333
BstHHI	GCGC	2 cut(s)	335, 643
BstKTI	GATC	3 cut(s)	67, 498, 627
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	3 cut(s)	64, 495, 624
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 101, 149, 182, 536, 638, 647
BstNI	CCWGG	3 cut(s)	192, 252, 599
BstNSI	RCATGY	1 cut(s)	76
BstSCI	CCNGG	5 cut(s)	190, 250, 298, 500, 597
BstSFI	CTRYAG	2 cut(s)	228, 518
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	4 cut(s)	46, 155, 242, 504
BstV2I	GAAGAC	2 cut(s)	37, 340
BsuRI	GGCC	3 cut(s)	255, 281, 650
BtsCI	GGATG	2 cut(s)	376, 580
BtsIMutI	CAGTG	1 cut(s)	17
Cac8I	GCNNGC	2 cut(s)	133, 279
CaiI	CAGNNNCTG	1 cut(s)	62
CfoI	GCGC	2 cut(s)	335, 643
Cfr10I	RCCGGY	1 cut(s)	565
Cfr13I	GGNCC	2 cut(s)	280, 481
Csp6I	GTAC	3 cut(s)	525, 591, 606
CviAII	CATG	1 cut(s)	73
CviQI	GTAC	3 cut(s)	525, 591, 606
DdeI	CTNAG	2 cut(s)	55, 513
DpnI	GATC	3 cut(s)	66, 497, 626
DpnII	GATC	3 cut(s)	64, 495, 624
Eco130I	CCWWGG	2 cut(s)	420, 645
Eco147I	AGGCCT	2 cut(s)	255, 650
Eco31I	GGTCTC	1 cut(s)	277
Eco32I	GATATC	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	481
Eco57I	CTGAAG	2 cut(s)	31, 90
Eco88I	CYCGRG	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	481
EcoRII	CCWGG	3 cut(s)	190, 250, 597
EcoRV	GATATC	1 cut(s)	85
EcoT14I	CCWWGG	2 cut(s)	420, 645
ErhI	CCWWGG	2 cut(s)	420, 645
FaeI	CATG	1 cut(s)	76
FaiI	YATR	2 cut(s)	74, 294
FaqI	GGGAC	1 cut(s)	467
FatI	CATG	1 cut(s)	72
Fnu4HI	GCNGC	7 cut(s)	6, 60, 144, 231, 518, 555, 563
FokI	GGATG	2 cut(s)	383, 587
Fsp4HI	GCNGC	7 cut(s)	6, 60, 144, 231, 518, 555, 563
FspBI	CTAG	2 cut(s)	182, 652
GlaI	GCGC	2 cut(s)	334, 642
GluI	GCNGC	7 cut(s)	6, 60, 144, 231, 518, 555, 563
HaeIII	GGCC	3 cut(s)	255, 281, 650
HapII	CCGG	4 cut(s)	177, 300, 501, 566
HhaI	GCGC	2 cut(s)	335, 643
Hin1II	CATG	1 cut(s)	76
Hin6I	GCGC	2 cut(s)	333, 641
HinP1I	GCGC	2 cut(s)	333, 641
HincII	GTYRAC	1 cut(s)	585
HindII	GTYRAC	1 cut(s)	585
HinfI	GANTC	2 cut(s)	195, 247
HpaII	CCGG	4 cut(s)	177, 300, 501, 566
HphI	GGTGA	5 cut(s)	124, 190, 235, 317, 437
Hpy166II	GTNNAC	2 cut(s)	457, 585
Hpy188III	TCNNGA	4 cut(s)	68, 80, 241, 463
Hpy8I	GTNNAC	2 cut(s)	457, 585
HpyAV	CCTTC	2 cut(s)	220, 353
HpyCH4III	ACNGT	1 cut(s)	21
HpyCH4V	TGCA	4 cut(s)	135, 152, 230, 520
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 101, 149, 182, 536, 638, 647
HpyF3I	CTNAG	2 cut(s)	55, 513
Hsp92II	CATG	1 cut(s)	76
HspAI	GCGC	2 cut(s)	333, 641
KpnI	GGTACC	1 cut(s)	528
Kzo9I	GATC	3 cut(s)	64, 495, 624
LmnI	GCTCC	1 cut(s)	301
Lsp1109I	GCAGC	4 cut(s)	46, 155, 242, 504
LweI	GCATC	1 cut(s)	315
MaeI	CTAG	2 cut(s)	182, 652
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	3 cut(s)	66, 497, 626
MboI	GATC	3 cut(s)	64, 495, 624
MboII	GAAGA	5 cut(s)	37, 160, 340, 478, 634
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	1 cut(s)	285
MlyI	GAGTC	1 cut(s)	189
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	8 cut(s)	154, 266, 275, 296, 327, 551, 565, 568
MroXI	GAANNNNTTC	1 cut(s)	125
MseI	TTAA	1 cut(s)	618
MspA1I	CMGCKG	3 cut(s)	59, 110, 517
MspI	CCGG	4 cut(s)	177, 300, 501, 566
MspR9I	CCNGG	5 cut(s)	192, 252, 300, 502, 599
MvaI	CCWGG	3 cut(s)	192, 252, 599
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	7 cut(s)	14, 101, 149, 182, 536, 638, 647
NciI	CCSGG	2 cut(s)	300, 502
NdeII	GATC	3 cut(s)	64, 495, 624
NlaIII	CATG	1 cut(s)	76
NlaIV	GGNNCC	2 cut(s)	483, 526
NmuCI	GTSAC	1 cut(s)	223
NspI	RCATGY	1 cut(s)	76
PceI	AGGCCT	2 cut(s)	255, 650
PdmI	GAANNNNTTC	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	247
PfoI	TCCNGGA	1 cut(s)	298
PkrI	GCNGC	7 cut(s)	7, 61, 145, 232, 519, 556, 564
PleI	GAGTC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	189
PpuMI	RGGWCCY	1 cut(s)	481
Psp5II	RGGWCCY	1 cut(s)	481
Psp6I	CCWGG	3 cut(s)	190, 250, 597
PspGI	CCWGG	3 cut(s)	190, 250, 597
PspN4I	GGNNCC	2 cut(s)	483, 526
PspPI	GGNCC	2 cut(s)	280, 481
PspPPI	RGGWCCY	1 cut(s)	481
PstI	CTGCAG	2 cut(s)	232, 522
PstNI	CAGNNNCTG	1 cut(s)	62
PvuII	CAGCTG	2 cut(s)	59, 517
RsaI	GTAC	3 cut(s)	526, 592, 607
RsaNI	GTAC	3 cut(s)	525, 591, 606
SaqAI	TTAA	1 cut(s)	618
SatI	GCNGC	7 cut(s)	6, 60, 144, 231, 518, 555, 563
Sau3AI	GATC	3 cut(s)	64, 495, 624
Sau96I	GGNCC	2 cut(s)	280, 481
ScaI	AGTACT	1 cut(s)	592
SchI	GAGTC	1 cut(s)	189
ScrFI	CCNGG	5 cut(s)	192, 252, 300, 502, 599
SduI	GDGCHC	1 cut(s)	357
SetI	ASST	9 cut(s)	61, 212, 235, 319, 364, 402, 483, 519, 603
SfaNI	GCATC	1 cut(s)	315
SfcI	CTRYAG	2 cut(s)	228, 518
SgrAI	CRCCGGYG	1 cut(s)	565
SinI	GGWCC	1 cut(s)	481
Sse9I	AATT	1 cut(s)	285
SseBI	AGGCCT	2 cut(s)	255, 650
SsiI	CCGC	5 cut(s)	5, 110, 528, 555, 563
SspI	AATATT	1 cut(s)	535
SspMI	CTAG	2 cut(s)	182, 652
StuI	AGGCCT	2 cut(s)	255, 650
StyD4I	CCNGG	5 cut(s)	190, 250, 298, 500, 597
StyI	CCWWGG	2 cut(s)	420, 645
TaaI	ACNGT	1 cut(s)	21
TaqI	TCGA	1 cut(s)	357
TasI	AATT	1 cut(s)	285
TatI	WGTACW	1 cut(s)	590
TauI	GCSGC	3 cut(s)	8, 557, 565
TfiI	GAWTC	1 cut(s)	247
Tru1I	TTAA	1 cut(s)	618
Tru9I	TTAA	1 cut(s)	618
TscAI	CASTG	1 cut(s)	24
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	4 cut(s)	59, 143, 230, 517
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	2 cut(s)	134, 370
TspGWI	ACGGA	1 cut(s)	481
TspRI	CASTG	1 cut(s)	24
VpaK11BI	GGWCC	1 cut(s)	481
XceI	RCATGY	1 cut(s)	76
XcmI	CCANNNNNNNNNTGG	1 cut(s)	470
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	2 cut(s)	182, 652
ZrmI	AGTACT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.