Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009486

Physical Location & Seq

Genomic Coordinates Forward (+)

6879438 .. 6879996

Gene Structure 559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0088100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGAGGATGAAGGCATATCGAAAAATGTGGAGGGTGGTGCCTTGCATGAGAAGGAAGTTTCTGAGAACTGATTCCTGGAAAGACATTGAAGAAATAATCAAGAGCAAGCTAGCAACTATCAAGGAAGAGCCCGAGACTTGTGAGGAAAGCCTCACGCCGCCAAGGCTATGGTGCTTGGCGAATAATGAGAAGAAGATTGGATCGAAGCAGATGATCACAAGGCACTTTCCCATGCCAAATTTCAGCCTCAAAGACTCTTATTTGCTCTTCATGACTGGCTTTGGCGCCTCTAAGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

99

Amino Acids

11.83

Weight (kDa)

9.91

Isoelectric Point (pI)

57.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37420 AT2G37420
fragaria_vesca	FvH4_6g14420
malus_domestica	MD04G1119500.v1.1 MD12G1136800.v1.1
prunus_persica	Prupe.6G249200_v2.0.a1
pyrus_communis	pycom04g10890 pycom04g10900 pycom12g13130
rosa_chinensis	RchiOBHm_Chr3g0467551
rosa_laevigata	RLG00000024492
rosa_multiflora	Rmu_sc0000286.1_g000001 Rmu_sc0027582.1_g000001
rosa_roxburghii	Rroxscaffold_6G00413600
rosa_rugosa	Rorug03G0087900 Rorug03G0088000 Rorug03G0088100
rosa_samantha	Rh3AG135900 Rh3BG157700 Rh3CG157600 Rh3DG158500
rosa_wichuraiana	Rw3G012910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	37, 284
AciI	CCGC	1 cut(s)	158
AclWI	GGATC	1 cut(s)	208
AcsI	RAATTY	1 cut(s)	238
AcyI	GRCGYC	1 cut(s)	285
AfiI	CCNNNNNNNGG	1 cut(s)	294
AgsI	TTSAA	1 cut(s)	89
AjnI	CCWGG	1 cut(s)	74
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	1 cut(s)	208
Ama87I	CYCGRG	1 cut(s)	131
ApoI	RAATTY	1 cut(s)	238
Asp700I	GAANNNNTTC	1 cut(s)	70
AspLEI	GCGC	1 cut(s)	287
AsuNHI	GCTAGC	1 cut(s)	109
AvaI	CYCGRG	1 cut(s)	131
BanI	GGYRCC	2 cut(s)	37, 284
BanII	GRGCYC	1 cut(s)	132
BciT130I	CCWGG	1 cut(s)	76
BclI	TGATCA	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	1 cut(s)	110
BfoI	RGCGCY	1 cut(s)	288
BglI	GCCNNNNNGGC	1 cut(s)	163
BisI	GCNGC	1 cut(s)	158
BlsI	GCNGC	1 cut(s)	159
Bme1390I	CCNGG	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	131
BmiI	GGNNCC	2 cut(s)	39, 286
BmrFI	CCNGG	1 cut(s)	76
BmtI	GCTAGC	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse1I	ACTGG	1 cut(s)	280
BseBI	CCWGG	1 cut(s)	76
BseDI	CCNNGG	1 cut(s)	161
BseGI	GGATG	1 cut(s)	12
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMII	CTCAG	1 cut(s)	53
BseNI	ACTGG	1 cut(s)	280
BshNI	GGYRCC	2 cut(s)	37, 284
BsiHKCI	CYCGRG	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	128
BsoBI	CYCGRG	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	2 cut(s)	200, 213
BspACI	CCGC	1 cut(s)	158
BspCNI	CTCAG	1 cut(s)	54
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	2 cut(s)	39, 286
BspOI	GCTAGC	1 cut(s)	113
BspPI	GGATC	1 cut(s)	208
BspQI	GCTCTTC	2 cut(s)	120, 272
BspT107I	GGYRCC	2 cut(s)	37, 284
BsrI	ACTGG	1 cut(s)	280
BssECI	CCNNGG	1 cut(s)	161
BssMI	GATC	2 cut(s)	200, 213
BssNI	GRCGYC	1 cut(s)	285
BssT1I	CCWWGG	1 cut(s)	161
Bst2UI	CCWGG	1 cut(s)	76
Bst6I	CTCTTC	2 cut(s)	120, 272
BstACI	GRCGYC	1 cut(s)	285
BstC8I	GCNNGC	2 cut(s)	107, 111
BstDEI	CTNAG	2 cut(s)	62, 291
BstENI	CCTNNNNNAGG	1 cut(s)	292
BstF5I	GGATG	1 cut(s)	12
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	2 cut(s)	203, 216
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	2 cut(s)	200, 213
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstNI	CCWGG	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	74
BstXI	CCANNNNNNTGG	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	12
Cac8I	GCNNGC	2 cut(s)	107, 111
CciI	TCATGA	1 cut(s)	270
CfoI	GCGC	1 cut(s)	287
CviAII	CATG	3 cut(s)	46, 232, 271
CviJI	RGCY	6 cut(s)	109, 130, 150, 166, 246, 279
CviKI_1	RGCY	6 cut(s)	109, 130, 150, 166, 246, 279
DdeI	CTNAG	2 cut(s)	62, 291
DinI	GGCGCC	1 cut(s)	286
DpnI	GATC	2 cut(s)	202, 215
DpnII	GATC	2 cut(s)	200, 213
Eam1104I	CTCTTC	2 cut(s)	120, 272
EarI	CTCTTC	2 cut(s)	120, 272
Eco130I	CCWWGG	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	132
Eco88I	CYCGRG	1 cut(s)	131
EcoNI	CCTNNNNNAGG	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	161
EcoT38I	GRGCYC	1 cut(s)	132
EgeI	GGCGCC	1 cut(s)	286
EheI	GGCGCC	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	161
FaeI	CATG	3 cut(s)	49, 235, 274
FaiI	YATR	5 cut(s)	16, 47, 169, 233, 272
FatI	CATG	3 cut(s)	45, 231, 270
FbaI	TGATCA	1 cut(s)	213
Fnu4HI	GCNGC	1 cut(s)	158
FokI	GGATG	1 cut(s)	19
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	1 cut(s)	158
FspBI	CTAG	1 cut(s)	110
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	1 cut(s)	158
HaeII	RGCGCY	1 cut(s)	288
HhaI	GCGC	1 cut(s)	287
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	3 cut(s)	49, 235, 274
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HinfI	GANTC	2 cut(s)	71, 254
Hpy188I	TCNGA	1 cut(s)	63
Hpy188III	TCNNGA	2 cut(s)	100, 271
HpyAV	CCTTC	2 cut(s)	4, 45
HpyCH4V	TGCA	1 cut(s)	45
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpyF3I	CTNAG	2 cut(s)	62, 291
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	3 cut(s)	49, 235, 274
HspAI	GCGC	1 cut(s)	285
KasI	GGCGCC	1 cut(s)	284
Ksp22I	TGATCA	1 cut(s)	213
Kzo9I	GATC	2 cut(s)	200, 213
LguI	GCTCTTC	2 cut(s)	120, 272
LpnPI	CCDG	3 cut(s)	61, 88, 261
MaeI	CTAG	1 cut(s)	110
MalI	GATC	2 cut(s)	202, 215
MboI	GATC	2 cut(s)	200, 213
MboII	GAAGA	5 cut(s)	101, 137, 202, 205, 259
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	1 cut(s)	238
Mly113I	GGCGCC	1 cut(s)	285
MlyI	GAGTC	1 cut(s)	248
MnlI	CCTC	6 cut(s)	24, 136, 161, 257, 288, 298
MroXI	GAANNNNTTC	1 cut(s)	70
MspR9I	CCNGG	1 cut(s)	76
MvaI	CCWGG	1 cut(s)	76
MwoI	GCNNNNNNNGC	1 cut(s)	163
NarI	GGCGCC	1 cut(s)	285
NdeII	GATC	2 cut(s)	200, 213
NheI	GCTAGC	1 cut(s)	109
NlaIII	CATG	3 cut(s)	49, 235, 274
NlaIV	GGNNCC	2 cut(s)	39, 286
PagI	TCATGA	1 cut(s)	270
PciSI	GCTCTTC	2 cut(s)	120, 272
PdmI	GAANNNNTTC	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	71
PfoI	TCCNGGA	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	159
PleI	GAGTC	1 cut(s)	248
PluTI	GGCGCC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	74
PspN4I	GGNNCC	2 cut(s)	39, 286
SapI	GCTCTTC	2 cut(s)	120, 272
SatI	GCNGC	1 cut(s)	158
Sau3AI	GATC	2 cut(s)	200, 213
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	76
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	2 cut(s)	111, 299
SfoI	GGCGCC	1 cut(s)	286
Sse9I	AATT	1 cut(s)	238
SsiI	CCGC	1 cut(s)	158
SspDI	GGCGCC	1 cut(s)	284
SspMI	CTAG	1 cut(s)	110
StyD4I	CCNGG	1 cut(s)	74
StyI	CCWWGG	1 cut(s)	161
TaqI	TCGA	2 cut(s)	19, 203
TasI	AATT	1 cut(s)	238
TauI	GCSGC	1 cut(s)	160
TfiI	GAWTC	1 cut(s)	71
TspDTI	ATGAA	2 cut(s)	23, 259
XagI	CCTNNNNNAGG	1 cut(s)	292
XapI	RAATTY	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	70
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.