pycom04g11930
WRKY Family

WRKY transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0015149
Physical Location & Seq
Reverse (-)
14915111 .. 14916565
1455 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g11930.1

Sequence Viewer

Length: 615 bp
ATGGCTGATGATGGTTACAAATGGAGGAAGTATGGCCAGAAATCCATTAAGAATAGCCCTAATCCTAGCCCTATAAGTGTGTGTAGCTCAAGCAGTTACGAGCACTCAGTTCTACACCTAAGGAGCTACTACCGGTGCACAAATCCAAGATGCAGTGCCAAAAAGCAAGTAGAGAGGTCCAGTGAGGACCCAGACACACTCATCATCACCTATGAAGGGCTCCATTTACACTTTGCATACCCATTTTTCAACCTCAACAACCAGGCCCAAAACTCCACTCCACCAATGAAGAAGACCAAGAAGAAAACCTCGGATCCCCAACCCGAAGACCAAGAACGAGAAGCGCAAGAGAGCCCGCGAAGCGTTACTCCCGATCCAGTTTCGGATCTGCCGCCCGGCCCGTTTCCGGACCAGCATCAAGAGTTTGTGGAAGAAGAGAGAAGCTCACAAGGGTTGCTTCAAGATATGGTGCCATTCATGATTAGGAACCCTAAACCAACAAGTGCTTCTTCAAACTCTTCATGTTCCTCTTATCGTTCATCTCCAACGTCTCCTTCTTCTCTATCATGGGCCACTTCCTATTTTGACGTTGGCATAAATCATAGTTTTGGATGA

Protein Analysis

205

Amino Acids

22.96

Weight (kDa)

6.59

Isoelectric Point (pI)

63.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 3 - 77 1.6e-18 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015149)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43290
fragaria_vesca FvH4_6g13470
malus_domestica MD04G1131000.v1.1 MD12G1144100.v1.1
prunus_persica Prupe.6G257500_v2.0.a1
pyrus_communis pycom04g11930 pycom12g13870
rosa_chinensis RchiOBHm_Chr3g0466341
rosa_laevigata RLG00000024584
rosa_multiflora Rmu_sc0003480.1_g000013
rosa_roxburghii Rroxscaffold_6G00414560
rosa_rugosa Rorug03G0081100
rosa_samantha Rh3AG127400 Rh3BG148800 Rh3DG149500
rosa_wichuraiana Rw3G012040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 469
AccII CGCG 1 cut(s) 358
AccIII TCCGGA 1 cut(s) 406
AciI CCGC 2 cut(s) 356, 392
AclWI GGATC 4 cut(s) 308, 321, 368, 393
AcoI YGGCCR 1 cut(s) 34
AfiI CCNNNNNNNGG 2 cut(s) 216, 406
AgeI ACCGGT 1 cut(s) 132
AgsI TTSAA 3 cut(s) 250, 461, 513
AjnI CCWGG 1 cut(s) 261
AjuI GAANNNNNNNTTGG 4 cut(s) 490, 522, 538, 570
AluBI AGCT 3 cut(s) 87, 126, 444
AluI AGCT 3 cut(s) 87, 126, 444
Alw21I GWGCWC 2 cut(s) 105, 140
Alw26I GTCTC 1 cut(s) 555
Alw44I GTGCAC 1 cut(s) 136
AlwI GGATC 4 cut(s) 308, 321, 368, 393
Aor13HI TCCGGA 1 cut(s) 406
AoxI GGCC 4 cut(s) 34, 264, 397, 570
ApaLI GTGCAC 1 cut(s) 136
AsiGI ACCGGT 1 cut(s) 132
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 6 cut(s) 177, 187, 265, 398, 409, 570
AsuC2I CCSGG 1 cut(s) 396
AsuHPI GGTGA 1 cut(s) 199
AvaII GGWCC 3 cut(s) 177, 187, 409
AxyI CCTNAGG 1 cut(s) 119
BaeGI GKGCMC 1 cut(s) 140
BalI TGGCCA 1 cut(s) 36
BamHI GGATCC 1 cut(s) 313
BanI GGYRCC 1 cut(s) 469
BanII GRGCYC 2 cut(s) 222, 356
BbsI GAAGAC 2 cut(s) 299, 333
Bbv12I GWGCWC 2 cut(s) 105, 140
BccI CCATC 1 cut(s) 5
BciT130I CCWGG 1 cut(s) 263
BcnI CCSGG 1 cut(s) 396
BcoDI GTCTC 1 cut(s) 555
BfaI CTAG 1 cut(s) 66
BisI GCNGC 1 cut(s) 392
BlsI GCNGC 1 cut(s) 393
Bme1390I CCNGG 2 cut(s) 263, 396
Bme18I GGWCC 3 cut(s) 177, 187, 409
BmgT120I GGNCC 6 cut(s) 177, 187, 265, 398, 409, 570
BmiI GGNNCC 5 cut(s) 189, 221, 315, 471, 488
BmrFI CCNGG 2 cut(s) 263, 396
BmsI GCATC 2 cut(s) 140, 424
BpiI GAAGAC 2 cut(s) 299, 333
BplI GAGNNNNNCTC 2 cut(s) 428, 460
BpuEI CTTGAG 1 cut(s) 73
BpuMI CCSGG 1 cut(s) 396
BsaJI CCNNGG 1 cut(s) 309
BsaWI WCCGGW 2 cut(s) 132, 406
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 406
Bse118I RCCGGY 1 cut(s) 132
Bse1I ACTGG 2 cut(s) 180, 377
Bse21I CCTNAGG 1 cut(s) 119
BseAI TCCGGA 1 cut(s) 406
BseBI CCWGG 1 cut(s) 263
BseDI CCNNGG 1 cut(s) 309
BseLI CCNNNNNNNGG 2 cut(s) 216, 406
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 2 cut(s) 180, 377
BseSI GKGCMC 1 cut(s) 140
Bsh1236I CGCG 1 cut(s) 358
BshFI GGCC 4 cut(s) 36, 266, 399, 572
BshNI GGYRCC 1 cut(s) 469
BshTI ACCGGT 1 cut(s) 132
BsiHKAI GWGCWC 2 cut(s) 105, 140
BsiSI CCGG 3 cut(s) 133, 396, 407
BslI CCNNNNNNNGG 2 cut(s) 216, 406
BsmAI GTCTC 1 cut(s) 555
BsmBI CGTCTC 1 cut(s) 555
BsnI GGCC 4 cut(s) 36, 266, 399, 572
Bsp1286I GDGCHC 4 cut(s) 105, 140, 222, 356
Bsp13I TCCGGA 1 cut(s) 406
Bsp143I GATC 3 cut(s) 313, 373, 385
BspACI CCGC 2 cut(s) 356, 392
BspANI GGCC 4 cut(s) 36, 266, 399, 572
BspCNI CTCAG 1 cut(s) 119
BspEI TCCGGA 1 cut(s) 406
BspFNI CGCG 1 cut(s) 358
BspHI TCATGA 1 cut(s) 477
BspLI GGNNCC 5 cut(s) 189, 221, 315, 471, 488
BspPI GGATC 4 cut(s) 308, 321, 368, 393
BspT107I GGYRCC 1 cut(s) 469
BsrFI RCCGGY 1 cut(s) 132
BsrI ACTGG 2 cut(s) 180, 377
BssAI RCCGGY 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 309
BssMI GATC 3 cut(s) 313, 373, 385
Bst2UI CCWGG 1 cut(s) 263
Bst6I CTCTTC 2 cut(s) 429, 523
BstC8I GCNNGC 1 cut(s) 356
BstDEI CTNAG 2 cut(s) 106, 119
BstFNI CGCG 1 cut(s) 358
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 3 cut(s) 316, 376, 388
BstMAI GTCTC 1 cut(s) 555
BstMBI GATC 3 cut(s) 313, 373, 385
BstMWI GCNNNNNNNGC 1 cut(s) 360
BstNI CCWGG 1 cut(s) 263
BstSCI CCNGG 2 cut(s) 261, 394
BstSLI GKGCMC 1 cut(s) 140
BstUI CGCG 1 cut(s) 358
BstV2I GAAGAC 2 cut(s) 299, 333
BstX2I RGATCY 2 cut(s) 313, 385
BstYI RGATCY 2 cut(s) 313, 385
Bsu36I CCTNAGG 1 cut(s) 119
BsuRI GGCC 4 cut(s) 36, 266, 399, 572
BtsI GCAGTG 1 cut(s) 160
BtsIMutI CAGTG 2 cut(s) 160, 187
Cac8I GCNNGC 1 cut(s) 356
CciI TCATGA 1 cut(s) 477
CfoI GCGC 1 cut(s) 346
Cfr10I RCCGGY 1 cut(s) 132
Cfr13I GGNCC 6 cut(s) 177, 187, 265, 398, 409, 570
CspAI ACCGGT 1 cut(s) 132
CviAII CATG 3 cut(s) 478, 522, 567
DdeI CTNAG 2 cut(s) 106, 119
DpnI GATC 3 cut(s) 315, 375, 387
DpnII GATC 3 cut(s) 313, 373, 385
EaeI YGGCCR 1 cut(s) 34
Eam1104I CTCTTC 2 cut(s) 429, 523
EarI CTCTTC 2 cut(s) 429, 523
Eco24I GRGCYC 2 cut(s) 222, 356
Eco47I GGWCC 3 cut(s) 177, 187, 409
Eco81I CCTNAGG 1 cut(s) 119
EcoO109I RGGNCCY 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 261
EcoT38I GRGCYC 2 cut(s) 222, 356
Esp3I CGTCTC 1 cut(s) 555
FaeI CATG 3 cut(s) 481, 525, 570
FalI AAGNNNNNCTT 4 cut(s) 441, 473, 493, 525
FatI CATG 3 cut(s) 477, 521, 566
FauI CCCGC 1 cut(s) 363
Fnu4HI GCNGC 1 cut(s) 392
FriOI GRGCYC 2 cut(s) 222, 356
Fsp4HI GCNGC 1 cut(s) 392
FspBI CTAG 1 cut(s) 66
GlaI GCGC 1 cut(s) 345
GluI GCNGC 1 cut(s) 392
HaeIII GGCC 4 cut(s) 36, 266, 399, 572
HapII CCGG 3 cut(s) 133, 396, 407
HhaI GCGC 1 cut(s) 346
Hin1II CATG 3 cut(s) 481, 525, 570
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HpaII CCGG 3 cut(s) 133, 396, 407
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 2 cut(s) 313, 385
Hpy188III TCNNGA 5 cut(s) 371, 407, 419, 461, 478
Hpy8I GTNNAC 1 cut(s) 138
HpyAV CCTTC 2 cut(s) 209, 564
HpyCH4IV ACGT 2 cut(s) 548, 588
HpyCH4V TGCA 3 cut(s) 138, 153, 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 360
HpyF3I CTNAG 2 cut(s) 106, 119
HpySE526I ACGT 2 cut(s) 548, 588
Hsp92II CATG 3 cut(s) 481, 525, 570
HspAI GCGC 1 cut(s) 344
Kpn2I TCCGGA 1 cut(s) 406
Kzo9I GATC 3 cut(s) 313, 373, 385
LmnI GCTCC 2 cut(s) 123, 225
LweI GCATC 2 cut(s) 140, 424
MaeI CTAG 1 cut(s) 66
MaeII ACGT 2 cut(s) 548, 588
MaeIII GTNAC 3 cut(s) 14, 95, 364
MalI GATC 3 cut(s) 315, 375, 387
MboI GATC 3 cut(s) 313, 373, 385
MboII GAAGA 9 cut(s) 301, 304, 313, 338, 443, 446, 501, 510, 549
MflI RGATCY 2 cut(s) 313, 385
MhlI GDGCHC 4 cut(s) 105, 140, 222, 356
MlsI TGGCCA 1 cut(s) 36
MluNI TGGCCA 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 569
MnlI CCTC 6 cut(s) 18, 168, 178, 263, 319, 538
Mox20I TGGCCA 1 cut(s) 36
MroI TCCGGA 1 cut(s) 406
MscI TGGCCA 1 cut(s) 36
MseI TTAA 1 cut(s) 48
Msp20I TGGCCA 1 cut(s) 36
MspI CCGG 3 cut(s) 133, 396, 407
MspR9I CCNGG 2 cut(s) 263, 396
MvaI CCWGG 1 cut(s) 263
MvnI CGCG 1 cut(s) 358
MwoI GCNNNNNNNGC 1 cut(s) 360
NciI CCSGG 1 cut(s) 396
NdeII GATC 3 cut(s) 313, 373, 385
NlaIII CATG 3 cut(s) 481, 525, 570
NlaIV GGNNCC 5 cut(s) 189, 221, 315, 471, 488
PagI TCATGA 1 cut(s) 477
PinAI ACCGGT 1 cut(s) 132
PkrI GCNGC 1 cut(s) 393
PpuMI RGGWCCY 1 cut(s) 187
Psp5II RGGWCCY 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 261
PspGI CCWGG 1 cut(s) 261
PspN4I GGNNCC 5 cut(s) 189, 221, 315, 471, 488
PspPI GGNCC 6 cut(s) 177, 187, 265, 398, 409, 570
PspPPI RGGWCCY 1 cut(s) 187
PsuI RGATCY 2 cut(s) 313, 385
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 1 cut(s) 392
Sau3AI GATC 3 cut(s) 313, 373, 385
Sau96I GGNCC 6 cut(s) 177, 187, 265, 398, 409, 570
ScrFI CCNGG 2 cut(s) 263, 396
SduI GDGCHC 4 cut(s) 105, 140, 222, 356
SfaNI GCATC 2 cut(s) 140, 424
SinI GGWCC 3 cut(s) 177, 187, 409
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
SsiI CCGC 2 cut(s) 356, 392
SspMI CTAG 1 cut(s) 66
StyD4I CCNGG 2 cut(s) 261, 394
TaiI ACGT 2 cut(s) 551, 591
TauI GCSGC 1 cut(s) 394
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 2 cut(s) 160, 187
TspDTI ATGAA 5 cut(s) 228, 302, 466, 510, 528
TspRI CASTG 2 cut(s) 160, 187
VneI GTGCAC 1 cut(s) 136
VpaK11BI GGWCC 3 cut(s) 177, 187, 409
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.