Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0010407

Physical Location & Seq

Genomic Coordinates Forward (+)

16211812 .. 16213463

Gene Structure 1652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g13250.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCTGAACTTCAAGGAGCTGTTGTTGCTGCTGATATCAATGATGATGGAAAAATTGAACTAGTGACCGCTGATGCTCATGGAAATGTTGCTGCATGGACTACTAAAGGAGTAGAAATTTGGGAAAGGCATCTTAAGAGTCTAGTTCCCCAGGGTCCTACTATTGGTGATGTTGATGGGGACGGCCATACTGATGTTGTGGTTCCAACGTTATCCGGGAACATATACGTTCTTAGTGGCAAAGATGGGTCAATTGTTCGTCCTTATCCATATAGAACTCACGGGAGAGTTATGAATCAAGTTCTTCTAGTTGATTTAAGTAAAAAAGGAGATAAAAAGAAGGGACTTAGCCTTGTTACAACTTCGTTTGATGGTTACCTGTATGTAATTGATGGACCTACATCATGCGCCGATGTGGTCGATATTGGTGAAACCTCATATAGCATGGTCTTAGCAGACAATGTTGATGGTGGGGATGATCGATCTTATTGTTTCAACCATGAATGGCAATGTCTTTTGCTTCTCGACTCCTGCTGCGCAGCATCCCCTCAAGGGAGATCACCAAATCAAGGGAGAAACCATGTTGCAAATAGGTATAACCGTGAAGGTATCTTTGTTTCGCATTCATCAAGAGCTTTCCGTGATGAAGAGGGCAAGAACTTTTGGGTGGAGATTGAGATTATAGATAGCTATAGATACCCATCTGGGTTGCAAGCACCATATAATGTGACAGCAACGCTGTTAGTGCCAGGTAATTACCAAGGAGAGAGAAGGATAAGAATAAACGAGACCTTCAATCGTCCTGGAAAGCATCGTATGAAGCTTCCGACAGTTGGTGTAAGGACTACGGGTACTGTTTTGGTGGAGATGGTTGACAAGAACGGACTCTACTTTTCAGACGATTTCTCCCTCACATTCCACATGTATTACTATAGACTCCTCAAGTGGCTGCTTGTCCTACCAATGCTTGGAATGTTTGGCGTGCTTGTAATCCTTCGTCCACAAGAAGCTGTGCCTTTGCCATCATTTTCGCGAAACACCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0012505 GO:0016020 GO:0016043 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046872 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071840 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FG-GAP VCBS

Protein Analysis

349

Amino Acids

38.69

Weight (kDa)

5.87

Isoelectric Point (pI)

29.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09090 AT3G09090 AT3G09090
fragaria_vesca	FvH4_6g12060
malus_domestica	MD04G1146700.v1.1 MD12G1159900.v1.1
prunus_persica	Prupe.6G270500_v2.0.a1
pyrus_communis	pycom04g13250 pycom12g15180
rosa_chinensis	RchiOBHm_Chr3g0463901 RchiOBHm_Chr3g0463911
rosa_laevigata	RLG00000024737 RLG00000024746
rosa_multiflora	Rmu_sc0000517.1_g000002
rosa_roxburghii	Rroxscaffold_6G00416150
rosa_rugosa	Rorug03G0069100
rosa_samantha	Rh3AG126100 Rh3BG130100 Rh3CG132600 Rh3DG131300
rosa_wichuraiana	Rw3G010640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	538
AccB7I	CCANNNNNTGG	1 cut(s)	968
AccII	CGCG	1 cut(s)	1033
AciI	CCGC	1 cut(s)	69
AclI	AACGTT	1 cut(s)	209
AcoI	YGGCCR	1 cut(s)	184
AcsI	RAATTY	1 cut(s)	117
AfaI	GTAC	1 cut(s)	853
AfiI	CCNNNNNNNGG	5 cut(s)	164, 552, 569, 833, 968
AflII	CTTAAG	1 cut(s)	134
AflIII	ACRYGT	1 cut(s)	921
AgsI	TTSAA	4 cut(s)	14, 59, 496, 796
AhlI	ACTAGT	1 cut(s)	61
AjnI	CCWGG	3 cut(s)	150, 748, 802
AluBI	AGCT	5 cut(s)	20, 635, 690, 823, 1010
AluI	AGCT	5 cut(s)	20, 635, 690, 823, 1010
Alw26I	GTCTC	1 cut(s)	782
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	5 cut(s)	29, 92, 534, 539, 949
ApoI	RAATTY	1 cut(s)	117
AspLEI	GCGC	2 cut(s)	410, 539
AspS9I	GGNCC	2 cut(s)	155, 395
AsuC2I	CCSGG	1 cut(s)	217
AsuHPI	GGTGA	3 cut(s)	179, 440, 552
AvaII	GGWCC	2 cut(s)	155, 395
BbvI	GCAGC	5 cut(s)	16, 79, 521, 551, 936
BccI	CCATC	9 cut(s)	41, 170, 239, 365, 386, 461, 709, 862, 1030
BceAI	ACGGC	1 cut(s)	199
BciT130I	CCWGG	3 cut(s)	152, 750, 804
BcnI	CCSGG	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	782
BcuI	ACTAGT	1 cut(s)	61
BfaI	CTAG	3 cut(s)	62, 143, 308
BfmI	CTRYAG	2 cut(s)	691, 931
BfrI	CTTAAG	1 cut(s)	134
BisI	GCNGC	5 cut(s)	30, 93, 535, 540, 950
BlsI	GCNGC	5 cut(s)	31, 94, 536, 541, 951
Bme1390I	CCNGG	4 cut(s)	152, 217, 750, 804
Bme18I	GGWCC	2 cut(s)	155, 395
BmgT120I	GGNCC	2 cut(s)	155, 395
BmiI	GGNNCC	2 cut(s)	156, 204
BmrFI	CCNGG	4 cut(s)	152, 217, 750, 804
BmsI	GCATC	4 cut(s)	64, 139, 551, 820
BpuEI	CTTGAG	2 cut(s)	534, 926
BpuMI	CCSGG	1 cut(s)	217
Bsa29I	ATCGAT	1 cut(s)	481
BsaBI	GATNNNNATC	1 cut(s)	700
BsaI	GGTCTC	1 cut(s)	782
BsaJI	CCNNGG	3 cut(s)	150, 151, 760
BsaXI	ACNNNNNCTCC	4 cut(s)	9, 39, 890, 920
Bsc4I	CCNNNNNNNGG	5 cut(s)	164, 552, 569, 833, 968
Bse3DI	GCAATG	1 cut(s)	515
Bse8I	GATNNNNATC	1 cut(s)	700
BseBI	CCWGG	3 cut(s)	152, 750, 804
BseCI	ATCGAT	1 cut(s)	481
BseDI	CCNNGG	3 cut(s)	150, 151, 760
BseGI	GGATG	2 cut(s)	481, 542
BseJI	GATNNNNATC	1 cut(s)	700
BseLI	CCNNNNNNNGG	5 cut(s)	164, 552, 569, 833, 968
BseMI	GCAATG	1 cut(s)	515
BseRI	GAGGAG	1 cut(s)	929
BseXI	GCAGC	5 cut(s)	16, 79, 521, 551, 936
Bsh1236I	CGCG	1 cut(s)	1033
BshFI	GGCC	1 cut(s)	186
BshVI	ATCGAT	1 cut(s)	481
BsiSI	CCGG	1 cut(s)	216
BslFI	GGGAC	2 cut(s)	194, 357
BslI	CCNNNNNNNGG	5 cut(s)	164, 552, 569, 833, 968
BsmAI	GTCTC	1 cut(s)	782
BsmFI	GGGAC	2 cut(s)	194, 357
BsmI	GAATGC	1 cut(s)	622
BsnI	GGCC	1 cut(s)	186
Bso31I	GGTCTC	1 cut(s)	782
Bsp143I	GATC	3 cut(s)	478, 482, 557
Bsp68I	TCGCGA	1 cut(s)	1033
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	1 cut(s)	186
BspDI	ATCGAT	1 cut(s)	481
BspFNI	CGCG	1 cut(s)	1033
BspLI	GGNNCC	2 cut(s)	156, 204
BspTI	CTTAAG	1 cut(s)	134
BspTNI	GGTCTC	1 cut(s)	782
BsrDI	GCAATG	1 cut(s)	515
BssECI	CCNNGG	3 cut(s)	150, 151, 760
BssMI	GATC	3 cut(s)	478, 482, 557
BssT1I	CCWWGG	1 cut(s)	760
Bst2UI	CCWGG	3 cut(s)	152, 750, 804
Bst4CI	ACNGT	3 cut(s)	602, 832, 856
Bst6I	CTCTTC	1 cut(s)	642
BstAFI	CTTAAG	1 cut(s)	134
BstC8I	GCNNGC	2 cut(s)	714, 983
BstDEI	CTNAG	3 cut(s)	233, 347, 451
BstEII	GGTNACC	1 cut(s)	374
BstF5I	GGATG	2 cut(s)	481, 542
BstFNI	CGCG	1 cut(s)	1033
BstHHI	GCGC	2 cut(s)	410, 539
BstKTI	GATC	3 cut(s)	481, 485, 560
BstMAI	GTCTC	1 cut(s)	782
BstMBI	GATC	3 cut(s)	478, 482, 557
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 745
BstNI	CCWGG	3 cut(s)	152, 750, 804
BstNSI	RCATGY	1 cut(s)	925
BstPI	GGTNACC	1 cut(s)	374
BstSCI	CCNGG	4 cut(s)	150, 215, 748, 802
BstSFI	CTRYAG	2 cut(s)	691, 931
BstUI	CGCG	1 cut(s)	1033
BstV1I	GCAGC	5 cut(s)	16, 79, 521, 551, 936
Bsu15I	ATCGAT	1 cut(s)	481
BsuRI	GGCC	1 cut(s)	186
BsuTUI	ATCGAT	1 cut(s)	481
BtsCI	GGATG	2 cut(s)	481, 542
BtuMI	TCGCGA	1 cut(s)	1033
Cac8I	GCNNGC	2 cut(s)	714, 983
CfoI	GCGC	2 cut(s)	410, 539
Cfr13I	GGNCC	2 cut(s)	155, 395
ClaI	ATCGAT	1 cut(s)	481
Csp6I	GTAC	1 cut(s)	852
CviAII	CATG	7 cut(s)	80, 96, 405, 445, 500, 581, 922
CviJI	RGCY	9 cut(s)	5, 20, 186, 351, 635, 690, 823, 949, 1010
CviKI_1	RGCY	9 cut(s)	5, 20, 186, 351, 635, 690, 823, 949, 1010
CviQI	GTAC	1 cut(s)	852
DdeI	CTNAG	3 cut(s)	233, 347, 451
DpnI	GATC	3 cut(s)	480, 484, 559
DpnII	GATC	3 cut(s)	478, 482, 557
EaeI	YGGCCR	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	642
EarI	CTCTTC	1 cut(s)	642
Eco130I	CCWWGG	1 cut(s)	760
Eco31I	GGTCTC	1 cut(s)	782
Eco32I	GATATC	1 cut(s)	37
Eco47I	GGWCC	2 cut(s)	155, 395
Eco91I	GGTNACC	1 cut(s)	374
EcoO109I	RGGNCCY	1 cut(s)	155
EcoO65I	GGTNACC	1 cut(s)	374
EcoRII	CCWGG	3 cut(s)	150, 748, 802
EcoRV	GATATC	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	760
ErhI	CCWWGG	1 cut(s)	760
FaeI	CATG	7 cut(s)	83, 99, 408, 448, 503, 584, 925
FaqI	GGGAC	2 cut(s)	194, 357
FatI	CATG	7 cut(s)	79, 95, 404, 444, 499, 580, 921
Fnu4HI	GCNGC	5 cut(s)	30, 93, 535, 540, 950
FokI	GGATG	2 cut(s)	488, 529
Fsp4HI	GCNGC	5 cut(s)	30, 93, 535, 540, 950
FspBI	CTAG	3 cut(s)	62, 143, 308
FspI	TGCGCA	1 cut(s)	538
GlaI	GCGC	2 cut(s)	409, 538
GluI	GCNGC	5 cut(s)	30, 93, 535, 540, 950
HaeIII	GGCC	1 cut(s)	186
HapII	CCGG	1 cut(s)	216
HhaI	GCGC	2 cut(s)	410, 539
Hin1II	CATG	7 cut(s)	83, 99, 408, 448, 503, 584, 925
Hin6I	GCGC	2 cut(s)	408, 537
HinP1I	GCGC	2 cut(s)	408, 537
HincII	GTYRAC	1 cut(s)	874
HindII	GTYRAC	1 cut(s)	874
HindIII	AAGCTT	1 cut(s)	821
HinfI	GANTC	5 cut(s)	139, 295, 527, 885, 936
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	3 cut(s)	179, 440, 552
Hpy166II	GTNNAC	2 cut(s)	874, 1001
Hpy188I	TCNGA	2 cut(s)	828, 898
Hpy188III	TCNNGA	3 cut(s)	524, 630, 1032
Hpy8I	GTNNAC	2 cut(s)	874, 1001
HpyAV	CCTTC	5 cut(s)	334, 599, 765, 802, 1004
HpyCH4III	ACNGT	3 cut(s)	602, 832, 856
HpyCH4IV	ACGT	2 cut(s)	209, 228
HpyCH4V	TGCA	3 cut(s)	95, 587, 712
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 745
HpyF3I	CTNAG	3 cut(s)	233, 347, 451
HpySE526I	ACGT	2 cut(s)	209, 228
Hsp92II	CATG	7 cut(s)	83, 99, 408, 448, 503, 584, 925
HspAI	GCGC	2 cut(s)	408, 537
Kzo9I	GATC	3 cut(s)	478, 482, 557
LmnI	GCTCC	1 cut(s)	17
Lsp1109I	GCAGC	5 cut(s)	16, 79, 521, 551, 936
LweI	GCATC	4 cut(s)	64, 139, 551, 820
MaeI	CTAG	3 cut(s)	62, 143, 308
MaeII	ACGT	2 cut(s)	209, 228
MaeIII	GTNAC	4 cut(s)	64, 355, 374, 727
MalI	GATC	3 cut(s)	480, 484, 559
MboI	GATC	3 cut(s)	478, 482, 557
MboII	GAAGA	2 cut(s)	296, 659
MfeI	CAATTG	1 cut(s)	252
MluCI	AATT	5 cut(s)	54, 117, 252, 387, 754
MlyI	GAGTC	4 cut(s)	148, 521, 879, 930
MmeI	TCCRAC	2 cut(s)	230, 851
MnlI	CCTC	5 cut(s)	445, 558, 643, 920, 950
MseI	TTAA	2 cut(s)	135, 317
MslI	CAYNNNNRTG	2 cut(s)	84, 192
MspA1I	CMGCKG	1 cut(s)	71
MspCI	CTTAAG	1 cut(s)	134
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	4 cut(s)	152, 217, 750, 804
MunI	CAATTG	1 cut(s)	252
Mva1269I	GAATGC	1 cut(s)	622
MvaI	CCWGG	3 cut(s)	152, 750, 804
MvnI	CGCG	1 cut(s)	1033
MwoI	GCNNNNNNNGC	2 cut(s)	26, 745
NciI	CCSGG	1 cut(s)	217
NdeII	GATC	3 cut(s)	478, 482, 557
NlaIII	CATG	7 cut(s)	83, 99, 408, 448, 503, 584, 925
NlaIV	GGNNCC	2 cut(s)	156, 204
NmuCI	GTSAC	2 cut(s)	64, 727
NruI	TCGCGA	1 cut(s)	1033
NsbI	TGCGCA	1 cut(s)	538
NspI	RCATGY	1 cut(s)	925
PasI	CCCWGGG	1 cut(s)	151
PciI	ACATGT	1 cut(s)	921
PctI	GAATGC	1 cut(s)	622
PfeI	GAWTC	1 cut(s)	295
PflMI	CCANNNNNTGG	1 cut(s)	968
PfoI	TCCNGGA	2 cut(s)	215, 802
PkrI	GCNGC	5 cut(s)	31, 94, 536, 541, 951
PleI	GAGTC	4 cut(s)	147, 521, 879, 930
PpsI	GAGTC	4 cut(s)	147, 521, 879, 930
PpuMI	RGGWCCY	1 cut(s)	155
PscI	ACATGT	1 cut(s)	921
Psp1406I	AACGTT	1 cut(s)	209
Psp5II	RGGWCCY	1 cut(s)	155
Psp6I	CCWGG	3 cut(s)	150, 748, 802
PspEI	GGTNACC	1 cut(s)	374
PspGI	CCWGG	3 cut(s)	150, 748, 802
PspN4I	GGNNCC	2 cut(s)	156, 204
PspPI	GGNCC	2 cut(s)	155, 395
PspPPI	RGGWCCY	1 cut(s)	155
PsrI	GAACNNNNNNTAC	2 cut(s)	872, 904
RruI	TCGCGA	1 cut(s)	1033
RsaI	GTAC	1 cut(s)	853
RsaNI	GTAC	1 cut(s)	852
RseI	CAYNNNNRTG	2 cut(s)	84, 192
SaqAI	TTAA	2 cut(s)	135, 317
SatI	GCNGC	5 cut(s)	30, 93, 535, 540, 950
Sau3AI	GATC	3 cut(s)	478, 482, 557
Sau96I	GGNCC	2 cut(s)	155, 395
SchI	GAGTC	4 cut(s)	148, 521, 879, 930
ScrFI	CCNGG	4 cut(s)	152, 217, 750, 804
SfaNI	GCATC	4 cut(s)	64, 139, 551, 820
SfcI	CTRYAG	2 cut(s)	691, 931
SinI	GGWCC	2 cut(s)	155, 395
SmiMI	CAYNNNNRTG	2 cut(s)	84, 192
SmlI	CTYRAG	3 cut(s)	134, 549, 941
SmoI	CTYRAG	3 cut(s)	134, 549, 941
SpeI	ACTAGT	1 cut(s)	61
Sse9I	AATT	5 cut(s)	54, 117, 252, 387, 754
SsiI	CCGC	1 cut(s)	69
SspMI	CTAG	3 cut(s)	62, 143, 308
StyD4I	CCNGG	4 cut(s)	150, 215, 748, 802
StyI	CCWWGG	1 cut(s)	760
TaaI	ACNGT	3 cut(s)	602, 832, 856
TaiI	ACGT	2 cut(s)	212, 231
TaqI	TCGA	3 cut(s)	420, 481, 525
TasI	AATT	5 cut(s)	54, 117, 252, 387, 754
TfiI	GAWTC	1 cut(s)	295
Tru1I	TTAA	2 cut(s)	135, 317
Tru9I	TTAA	2 cut(s)	135, 317
TseFI	GTSAC	2 cut(s)	64, 727
TseI	GCWGC	5 cut(s)	29, 92, 534, 539, 949
Tsp45I	GTSAC	2 cut(s)	64, 727
TspDTI	ATGAA	5 cut(s)	308, 516, 615, 660, 833
TspGWI	ACGGA	2 cut(s)	629, 897
Van91I	CCANNNNNTGG	1 cut(s)	968
Vha464I	CTTAAG	1 cut(s)	134
VpaK11BI	GGWCC	2 cut(s)	155, 395
XapI	RAATTY	1 cut(s)	117
XceI	RCATGY	1 cut(s)	925
XspI	CTAG	3 cut(s)	62, 143, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.