RchiOBHm_Chr3g0463901

Defective in exine formation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0010407
Physical Location & Seq
Reverse (-)
11210708 .. 11211782
1075 bp
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UTR
Exon/CDS
Intron
PRQ43019

Sequence Viewer

Length: 507 bp
ATGACTTCTGCATGGAGAGTACCTAATCAGGGGAGAAATCATCTTGCAAATAGATACAACCGTCAAGGTATCTTTGTTAAACATTCATCAAGAGCTTTTCGTGACGAAGAGGGCAAGAACTTCTTTGTGGAGATTGAGATCATAGATGACTATAGATACCCATCTGGGTTGCAAGCCCCATACACTGTCACAACAACCTTGTTGGTGCCTGGTAATTACCAAGGAGAGAGAAGGATAAAGATAAACCAGACCTTCAATCGTCCTGGAAAGTATCGTATAAAGCTTCCAACAGTTGGTGTAAGGACTACTGGGACTGTTGTGGTCGAGATGGTTGACAAGAATGGACTCTATTTTACAGATGATTTCTCCCTCACATTCCATATGTATTACTACAGACTGTTAAAGTGGCTGCTTGTCCTGCCAATGTTGGGGATGTTTGGTGTACTCGTAATCCTTCGTCCTCAGGAAGCTGTGCCTTTGCCATCATTTTCACGAAACACTGACTAA

Protein Analysis

168

Amino Acids

19.56

Weight (kDa)

9.83

Isoelectric Point (pI)

33.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-sand_DEX1 PF23722 23 - 127 1.2e-35 DEX1 beta-sandwich
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010407)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09090 AT3G09090 AT3G09090
fragaria_vesca FvH4_6g12060
malus_domestica MD04G1146700.v1.1 MD12G1159900.v1.1
prunus_persica Prupe.6G270500_v2.0.a1
pyrus_communis pycom04g13250 pycom12g15180
rosa_chinensis RchiOBHm_Chr3g0463901 RchiOBHm_Chr3g0463911
rosa_laevigata RLG00000024737 RLG00000024746
rosa_multiflora Rmu_sc0000517.1_g000002
rosa_roxburghii Rroxscaffold_6G00416150
rosa_rugosa Rorug03G0069100
rosa_samantha Rh3AG126100 Rh3BG130100 Rh3CG132600 Rh3DG131300
rosa_wichuraiana Rw3G010640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 205
AccB7I CCANNNNNTGG 1 cut(s) 293
AfaI GTAC 2 cut(s) 21, 444
AfiI CCNNNNNNNGG 3 cut(s) 29, 293, 428
AgsI TTSAA 1 cut(s) 256
AjnI CCWGG 2 cut(s) 208, 262
AluBI AGCT 3 cut(s) 95, 283, 470
AluI AGCT 3 cut(s) 95, 283, 470
ApeKI GCWGC 1 cut(s) 409
AxyI CCTNAGG 1 cut(s) 462
BaeI ACNNNNGTAYC 2 cut(s) 46, 79
BanI GGYRCC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 396
BccI CCATC 3 cut(s) 169, 322, 490
BciT130I CCWGG 2 cut(s) 210, 264
BfmI CTRYAG 2 cut(s) 151, 391
BisI GCNGC 1 cut(s) 410
BlsI GCNGC 1 cut(s) 411
Bme1390I CCNGG 2 cut(s) 210, 264
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 2 cut(s) 210, 264
BmrI ACTGGG 1 cut(s) 318
BmuI ACTGGG 1 cut(s) 318
BsaBI GATNNNNATC 2 cut(s) 137, 160
BsaJI CCNNGG 1 cut(s) 220
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 293, 428
Bse1I ACTGG 1 cut(s) 313
Bse21I CCTNAGG 1 cut(s) 462
Bse8I GATNNNNATC 2 cut(s) 137, 160
BseBI CCWGG 2 cut(s) 210, 264
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 1 cut(s) 438
BseJI GATNNNNATC 2 cut(s) 137, 160
BseLI CCNNNNNNNGG 3 cut(s) 29, 293, 428
BseMII CTCAG 1 cut(s) 476
BseNI ACTGG 1 cut(s) 313
BseXI GCAGC 1 cut(s) 396
BshNI GGYRCC 1 cut(s) 205
BslFI GGGAC 1 cut(s) 325
BslI CCNNNNNNNGG 3 cut(s) 29, 293, 428
BsmFI GGGAC 1 cut(s) 325
Bsp143I GATC 1 cut(s) 138
BspCNI CTCAG 1 cut(s) 475
BspLI GGNNCC 1 cut(s) 207
BspT107I GGYRCC 1 cut(s) 205
BsrI ACTGG 1 cut(s) 313
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 220
Bst2UI CCWGG 2 cut(s) 210, 264
Bst4CI ACNGT 5 cut(s) 62, 187, 292, 316, 399
Bst6I CTCTTC 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 1 cut(s) 462
BstF5I GGATG 1 cut(s) 438
BstKTI GATC 1 cut(s) 141
BstMBI GATC 1 cut(s) 138
BstMWI GCNNNNNNNGC 1 cut(s) 418
BstNI CCWGG 2 cut(s) 210, 264
BstSCI CCNGG 2 cut(s) 208, 262
BstSFI CTRYAG 2 cut(s) 151, 391
BstV1I GCAGC 1 cut(s) 396
Bsu36I CCTNAGG 1 cut(s) 462
BtsCI GGATG 1 cut(s) 438
BtsIMutI CAGTG 2 cut(s) 183, 498
Cac8I GCNNGC 1 cut(s) 174
Csp6I GTAC 2 cut(s) 20, 443
CviAII CATG 1 cut(s) 12
CviJI RGCY 5 cut(s) 95, 176, 283, 409, 470
CviKI_1 RGCY 5 cut(s) 95, 176, 283, 409, 470
CviQI GTAC 2 cut(s) 20, 443
DdeI CTNAG 1 cut(s) 462
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 220
Eco81I CCTNAGG 1 cut(s) 462
EcoRII CCWGG 2 cut(s) 208, 262
EcoT14I CCWWGG 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 1 cut(s) 15
FaiI YATR 7 cut(s) 13, 143, 153, 181, 278, 381, 383
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FaqI GGGAC 1 cut(s) 325
FatI CATG 1 cut(s) 11
FauNDI CATATG 1 cut(s) 381
Fnu4HI GCNGC 1 cut(s) 410
FokI GGATG 1 cut(s) 445
Fsp4HI GCNGC 1 cut(s) 410
GluI GCNGC 1 cut(s) 410
Hin1II CATG 1 cut(s) 15
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 1 cut(s) 345
Hpy166II GTNNAC 2 cut(s) 334, 443
Hpy188III TCNNGA 5 cut(s) 90, 101, 325, 464, 492
Hpy8I GTNNAC 2 cut(s) 334, 443
HpyAV CCTTC 3 cut(s) 225, 262, 464
HpyCH4III ACNGT 5 cut(s) 62, 187, 292, 316, 399
HpyCH4V TGCA 3 cut(s) 11, 47, 172
HpyF10VI GCNNNNNNNGC 1 cut(s) 418
HpyF3I CTNAG 1 cut(s) 462
Hsp92II CATG 1 cut(s) 15
Kzo9I GATC 1 cut(s) 138
Lsp1109I GCAGC 1 cut(s) 396
MaeIII GTNAC 2 cut(s) 101, 187
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 1 cut(s) 119
MluCI AATT 1 cut(s) 214
MlyI GAGTC 1 cut(s) 339
MmeI TCCRAC 1 cut(s) 311
MnlI CCTC 3 cut(s) 103, 380, 471
MseI TTAA 2 cut(s) 78, 401
MspR9I CCNGG 2 cut(s) 210, 264
MvaI CCWGG 2 cut(s) 210, 264
MwoI GCNNNNNNNGC 1 cut(s) 418
NdeI CATATG 1 cut(s) 381
NdeII GATC 1 cut(s) 138
NlaIII CATG 1 cut(s) 15
NlaIV GGNNCC 1 cut(s) 207
NmuCI GTSAC 2 cut(s) 101, 187
PflMI CCANNNNNTGG 1 cut(s) 293
PfoI TCCNGGA 1 cut(s) 262
PkrI GCNGC 1 cut(s) 411
PleI GAGTC 1 cut(s) 339
PpsI GAGTC 1 cut(s) 339
Psp6I CCWGG 2 cut(s) 208, 262
PspGI CCWGG 2 cut(s) 208, 262
PspN4I GGNNCC 1 cut(s) 207
RsaI GTAC 2 cut(s) 21, 444
RsaNI GTAC 2 cut(s) 20, 443
SaqAI TTAA 2 cut(s) 78, 401
SatI GCNGC 1 cut(s) 410
Sau3AI GATC 1 cut(s) 138
SchI GAGTC 1 cut(s) 339
ScrFI CCNGG 2 cut(s) 210, 264
SetI ASST 7 cut(s) 25, 70, 97, 200, 254, 285, 472
SfcI CTRYAG 2 cut(s) 151, 391
Sse9I AATT 1 cut(s) 214
StyD4I CCNGG 2 cut(s) 208, 262
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 5 cut(s) 62, 187, 292, 316, 399
TaqI TCGA 1 cut(s) 324
TasI AATT 1 cut(s) 214
TatI WGTACW 1 cut(s) 442
Tru1I TTAA 2 cut(s) 78, 401
Tru9I TTAA 2 cut(s) 78, 401
TscAI CASTG 2 cut(s) 190, 505
TseFI GTSAC 2 cut(s) 101, 187
TseI GCWGC 1 cut(s) 409
Tsp45I GTSAC 2 cut(s) 101, 187
TspDTI ATGAA 1 cut(s) 75
TspRI CASTG 2 cut(s) 190, 505
Van91I CCANNNNNTGG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.