Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0010407

Physical Location & Seq

Genomic Coordinates Reverse (-)

11205406 .. 11210305

Gene Structure 4900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG131300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2658 bp

ATGAAATCCGACGGGATTCGGGTGATTTTTCTGATCTGTTTAATTCTTTGCGACGGCTCGAAATTCGTTCGCGGCGCCGATGAGCCGGCCAAGAATAAATTCCGGGAACGCGAGGCCAGCGATGACTCCCTTGGCTATCCAAACATAGATGAGGATGCGTTGTTGAATACACAGTGCCCTGCGAAATTGGAGCTCAGATGGCAAACGGAAGTTAGTTCTAGTATCTATGCTACGCCATTGATCTCCGATATTAATAGTGATGGAAAGCTTGAGATTGTGGTGCCATCTTTTGTTCACTATCTTGAAGTTTTGGAAGGTTCCGACGGAGACAAACTCCCCGGTTGGCCTGCTTTTCATCAGTCAACTGTACATGCAAGTCCTCTCCTGTATGATATCGATAAGGATGGTGTGAGAGAGATAGCTCTAGCAACCTACAATGGTGAAGTTCTCTTTTTCAGGGTCTCAGGCTACATGATGGTAGATAAACTAGTAGTACCTCGTAGGAAAGTTAAAAAGAATTGGTTTGGGGGTTTGCATCCAGATCCCGTTGATCGTACCCATCCAGATGTTCATGATGACCTTCTTGTCATGCAGGCCAGTAATATGAATTCAAATCCTCAAACAGAGGAAAATACAACTAAAATAAACAATTCTGCTACTGTTGCAACAGAAAGCCATCCTGGTGTTAATACTTCAACTTCTGTTTCCAATGATGGCCATCCTGAGTTAGATACTAATACTACTGTTTCAAAAGAAAGTGATCCCGGCTTAAGTACTCCAGCTAAAAACGAAAGCCACCTTAGCATGGTCAAGGCATCAAATCCACAGGTTGAGAAGAAAGCAAATTTAAGTCTGGTAGAAACAGACATCAAGCAATCTACAAGCACAGAGAAGTCTTCTGTCAACAATGTGCCAGTGGAAACTCTGAATGCCGAGAAGGGGACTAGTTCGGTTAGACGGCTTTTGGAGGACAACAATTCTAGCAAATCACAGGATGGTGGTTCTGAATCCAAAGATAATAATGAGGACATTCCTGTTGCAACTGCAGAAAATGATGGTGTTCTCGAAGAGGATGCTGATTCATCTTTTGAGTTACTCCGTGACAATGATGAACTGGCCGACGAGTATAACTATGACTATGATGATTATGTTGATGAAGAAATGTGGGGAGATGAGGAGTGGACTGAAGTGCAACATGAGAAAATAGAAGATTATGTCAATGTTGACGCACACATCTTGTGCACTCCTGTCATAGCGGACATTGATAATGATGGAATATCAGAAATGGTTGTTGCCGTTTCTTACTTTTTTGATCATGAGTACTATGACAACCCAGAGCATATGAAGGAATTGGGTGGCATTGATATAGGAAAATATGTAGCTGGTTCCATTGTTGTGTTCAACCTTGACACTAAACAAGTAAAGTGGACTGCTGATCTAGATTTGAGTACAGAGACTGGAACATTCCGTGCTTACATATATTCCTCTCCGACTGTCGTTGATTTGGATGGTGATGGGAACCTGGACATTCTTGTCGGAACTTCATTTGGCTTGTTCTATGTGTTAGATCATCATGGCAAGGTGAGGGAAAAGTTCCCTCTTGAAATGGCTGAAATTCAAGGAGCTGTTGTTGCAGCTGATATTAATGATGATGGAAAAATTGAACTAGTGACTACTGATGCTCATGGAAATGTTGCTGCATGGACTGCTCAAGGAGTAGAAATTTGGGAAACGCATCTTAAGAGTCTAGTTCCCCAGGGTCCCACCATCGGTGATGTTGATGGGGATGGCCGTACTGATGTTGTGGTTCCAACACTATCAGGGAACATATACGTTCTTAGTGGCAAAGATGGGTTGATTGTTCGTCCTTATCCATATAGAACTCATGGGAGGGTTATGAGTCAAGTTCTTCTAGTGGATTTAAGTAAAAAAGGAGAGAAAAAGAAAGGACTCACTCTTGCTACAACATCATTTGATGGATATTTGTACCTTATTGATGGACCAACAGCATGTGCAGATGTTGTTGATATTGGTGAAACTTCATATAGCATGGTCTTAGCAGATAATGTTGACGGTGGAGACGATCTTGATCTTATTGTTACAACCATGAATGGCAATGTTTATTGCTTCTCGACTCCAGCTTCACATCATCCCCTTAAGGCATGGAGAGTACCTAATCAGGGGAGAAATCATCTTGCAAATAGGTACAACCGTCAAGGTATCTTTGTTAAACATTCATCAAGAGCTTTTCGTGACGAAGAGGGCAAGAACTTCTTTGTGGAGATTGAGATCATAGATGACTATAGATACCCATCTGGGTTGCAAGCCCCATACACTGTCACAACAACCTTGTTGGTGCCTGGTAATTACCAAGGAGAGAGAAGGATAAAGATAAACCAGACCTTCAATCGTCCTGGAAAGTATCGTATAAAGCTTCCAACAGTTGGTGTAAGGACTACTGGGACTGTTGTGGTCGAGATGGTTGACAAGAATGGACTCTATTTTTCAGATGATTTCTCCCTCACATTCCATATGTATTACTACAGACTGTTAAAGTGGCTGCTTGTCCTGCCAATGTTGGGGATGTTTGGTGTACTTGTAATCCTTCGTCCTCAGGAAGCTGTGCCTTTGCCATCATTTTCACGAAACACTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0012505 GO:0016020 GO:0016043 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046872 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071840 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FG-GAP VCBS

Protein Analysis

885

Amino Acids

98.23

Weight (kDa)

4.68

Isoelectric Point (pI)

31.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FG-GAP_3	PF13517	547 - 603	1.5e-06	FG-GAP-like repeat
Beta-sand_DEX1	PF23722	740 - 844	3.4e-34	DEX1 beta-sandwich

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09090 AT3G09090 AT3G09090
fragaria_vesca	FvH4_6g12060
malus_domestica	MD04G1146700.v1.1 MD12G1159900.v1.1
prunus_persica	Prupe.6G270500_v2.0.a1
pyrus_communis	pycom04g13250 pycom12g15180
rosa_chinensis	RchiOBHm_Chr3g0463901 RchiOBHm_Chr3g0463911
rosa_laevigata	RLG00000024737 RLG00000024746
rosa_multiflora	Rmu_sc0000517.1_g000002
rosa_roxburghii	Rroxscaffold_6G00416150
rosa_rugosa	Rorug03G0069100
rosa_samantha	Rh3AG126100 Rh3BG130100 Rh3CG132600 Rh3DG131300
rosa_wichuraiana	Rw3G010640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	584, 1532
AccB1I	GGYRCC	3 cut(s)	74, 280, 2356
AccB7I	CCANNNNNTGG	1 cut(s)	2444
AccII	CGCG	2 cut(s)	72, 111
AciI	CCGC	2 cut(s)	72, 1256
AclWI	GGATC	2 cut(s)	536, 755
AcoI	YGGCCR	4 cut(s)	87, 715, 1116, 1789
AcsI	RAATTY	6 cut(s)	62, 98, 607, 844, 1614, 1722
AcuI	CTGAAG	1 cut(s)	1206
AcyI	GRCGYC	1 cut(s)	75
AfiI	CCNNNNNNNGG	6 cut(s)	805, 939, 1769, 2180, 2444, 2579
AflII	CTTAAG	3 cut(s)	769, 1739, 2156
AhlI	ACTAGT	3 cut(s)	487, 944, 1666
AjnI	CCWGG	5 cut(s)	679, 1521, 1755, 2359, 2413
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
Alw21I	GWGCWC	2 cut(s)	195, 1244
Alw26I	GTCTC	4 cut(s)	321, 466, 1448, 2073
Alw44I	GTGCAC	1 cut(s)	1240
AlwI	GGATC	2 cut(s)	536, 755
AlwNI	CAGNNNCTG	1 cut(s)	1457
AoxI	GGCC	7 cut(s)	87, 114, 344, 594, 715, 1116, 1789
ApaLI	GTGCAC	1 cut(s)	1240
ApeKI	GCWGC	3 cut(s)	1634, 1697, 2560
ApoI	RAATTY	6 cut(s)	62, 98, 607, 844, 1614, 1722
AseI	ATTAAT	2 cut(s)	252, 1644
Asp700I	GAANNNNTTC	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	77
AspS9I	GGNCC	2 cut(s)	1760, 2000
AsuC2I	CCSGG	3 cut(s)	104, 339, 765
AsuHPI	GGTGA	6 cut(s)	34, 452, 1523, 1594, 1784, 2045
AvaII	GGWCC	2 cut(s)	1760, 2000
AxyI	CCTNAGG	1 cut(s)	2613
BaeGI	GKGCMC	2 cut(s)	179, 1244
BaeI	ACNNNNGTAYC	2 cut(s)	2197, 2230
BalI	TGGCCA	1 cut(s)	717
BanI	GGYRCC	3 cut(s)	74, 280, 2356
BanII	GRGCYC	1 cut(s)	195
BbsI	GAAGAC	1 cut(s)	888
Bbv12I	GWGCWC	2 cut(s)	195, 1244
BbvI	GCAGC	3 cut(s)	1646, 1684, 2547
BceAI	ACGGC	4 cut(s)	70, 974, 1280, 1776
BcgI	CGANNNNNNTGC	2 cut(s)	1055, 1089
BciT130I	CCWGG	5 cut(s)	681, 1523, 1757, 2361, 2415
BclI	TGATCA	1 cut(s)	1312
BcnI	CCSGG	3 cut(s)	104, 339, 765
BcoDI	GTCTC	4 cut(s)	321, 466, 1448, 2073
BcuI	ACTAGT	3 cut(s)	487, 944, 1666
BfaI	CTAG	9 cut(s)	219, 425, 488, 945, 981, 1439, 1667, 1748, 1913
BfmI	CTRYAG	3 cut(s)	1044, 2302, 2542
BfoI	RGCGCY	1 cut(s)	78
BfrI	CTTAAG	3 cut(s)	769, 1739, 2156
BisI	GCNGC	4 cut(s)	73, 1635, 1698, 2561
BlsI	GCNGC	4 cut(s)	74, 1636, 1699, 2562
BmcAI	AGTACT	2 cut(s)	775, 1322
Bme1390I	CCNGG	8 cut(s)	104, 339, 681, 765, 1523, 1757, 2361, 2415
Bme18I	GGWCC	2 cut(s)	1760, 2000
BmgT120I	GGNCC	2 cut(s)	1760, 2000
BmiI	GGNNCC	9 cut(s)	76, 282, 319, 1387, 1520, 1761, 1762, 1809, 2358
BmrFI	CCNGG	8 cut(s)	104, 339, 681, 765, 1523, 1757, 2361, 2415
BmrI	ACTGGG	1 cut(s)	2469
BmsI	GCATC	6 cut(s)	145, 544, 824, 1063, 1669, 1744
BmuI	ACTGGG	1 cut(s)	2469
BpiI	GAAGAC	1 cut(s)	888
BplI	GAGNNNNNCTC	2 cut(s)	318, 350
BpmI	CTGGAG	2 cut(s)	762, 2121
Bpu10I	CCTNAGC	1 cut(s)	800
BpuEI	CTTGAG	2 cut(s)	290, 1695
BpuMI	CCSGG	3 cut(s)	104, 339, 765
Bsa29I	ATCGAT	1 cut(s)	396
BsaBI	GATNNNNATC	4 cut(s)	717, 2088, 2288, 2311
BsaHI	GRCGYC	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	466
BsaJI	CCNNGG	5 cut(s)	130, 337, 1755, 1756, 2371
BsaXI	ACNNNNNCTCC	2 cut(s)	1614, 1644
Bsc4I	CCNNNNNNNGG	6 cut(s)	805, 939, 1769, 2180, 2444, 2579
Bse118I	RCCGGY	1 cut(s)	85
Bse1I	ACTGG	5 cut(s)	597, 914, 1119, 1462, 2464
Bse21I	CCTNAGG	1 cut(s)	2613
Bse3DI	GCAATG	1 cut(s)	2122
Bse8I	GATNNNNATC	4 cut(s)	717, 2088, 2288, 2311
BseBI	CCWGG	5 cut(s)	681, 1523, 1757, 2361, 2415
BseCI	ATCGAT	1 cut(s)	396
BseDI	CCNNGG	5 cut(s)	130, 337, 1755, 1756, 2371
BseJI	GATNNNNATC	4 cut(s)	717, 2088, 2288, 2311
BseLI	CCNNNNNNNGG	6 cut(s)	805, 939, 1769, 2180, 2444, 2579
BseMI	GCAATG	1 cut(s)	2122
BseMII	CTCAG	4 cut(s)	208, 477, 714, 2627
BseNI	ACTGG	5 cut(s)	597, 914, 1119, 1462, 2464
BseRI	GAGGAG	1 cut(s)	1190
BseSI	GKGCMC	2 cut(s)	179, 1244
BseXI	GCAGC	3 cut(s)	1646, 1684, 2547
BsgI	GTGCAG	1 cut(s)	2034
Bsh1236I	CGCG	2 cut(s)	72, 111
BshFI	GGCC	7 cut(s)	89, 116, 346, 596, 717, 1118, 1791
BshNI	GGYRCC	3 cut(s)	74, 280, 2356
BshVI	ATCGAT	1 cut(s)	396
BsiHKAI	GWGCWC	2 cut(s)	195, 1244
BsiSI	CCGG	4 cut(s)	86, 103, 339, 765
BslFI	GGGAC	3 cut(s)	955, 1746, 2476
BslI	CCNNNNNNNGG	6 cut(s)	805, 939, 1769, 2180, 2444, 2579
BsmAI	GTCTC	4 cut(s)	321, 466, 1448, 2073
BsmBI	CGTCTC	1 cut(s)	2073
BsmFI	GGGAC	3 cut(s)	955, 1746, 2476
BsmI	GAATGC	1 cut(s)	934
BsnI	GGCC	7 cut(s)	89, 116, 346, 596, 717, 1118, 1791
Bso31I	GGTCTC	1 cut(s)	466
Bsp1286I	GDGCHC	3 cut(s)	179, 195, 1244
Bsp1407I	TGTACA	1 cut(s)	367
BspACI	CCGC	2 cut(s)	72, 1256
BspANI	GGCC	7 cut(s)	89, 116, 346, 596, 717, 1118, 1791
BspCNI	CTCAG	4 cut(s)	207, 476, 715, 2626
BspDI	ATCGAT	1 cut(s)	396
BspFNI	CGCG	2 cut(s)	72, 111
BspHI	TCATGA	2 cut(s)	571, 1315
BspLI	GGNNCC	9 cut(s)	76, 282, 319, 1387, 1520, 1761, 1762, 1809, 2358
BspMAI	CTGCAG	1 cut(s)	1048
BspPI	GGATC	2 cut(s)	536, 755
BspT107I	GGYRCC	3 cut(s)	74, 280, 2356
BspTI	CTTAAG	3 cut(s)	769, 1739, 2156
BspTNI	GGTCTC	1 cut(s)	466
BsrDI	GCAATG	1 cut(s)	2122
BsrFI	RCCGGY	1 cut(s)	85
BsrGI	TGTACA	1 cut(s)	367
BsrI	ACTGG	5 cut(s)	597, 914, 1119, 1462, 2464
BssAI	RCCGGY	1 cut(s)	85
BssECI	CCNNGG	5 cut(s)	130, 337, 1755, 1756, 2371
BssNI	GRCGYC	1 cut(s)	75
BssT1I	CCWWGG	2 cut(s)	130, 2371
Bst2UI	CCWGG	5 cut(s)	681, 1523, 1757, 2361, 2415
Bst6I	CTCTTC	2 cut(s)	1062, 2253
BstACI	GRCGYC	1 cut(s)	75
BstAFI	CTTAAG	3 cut(s)	769, 1739, 2156
BstAPI	GCANNNNNTGC	1 cut(s)	1706
BstAUI	TGTACA	1 cut(s)	367
BstC8I	GCNNGC	5 cut(s)	87, 118, 348, 594, 2325
BstDEI	CTNAG	7 cut(s)	194, 463, 723, 800, 1838, 2056, 2613
BstFNI	CGCG	2 cut(s)	72, 111
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	77
BstMAI	GTCTC	4 cut(s)	321, 466, 1448, 2073
BstMWI	GCNNNNNNNGC	7 cut(s)	117, 199, 662, 801, 1631, 1706, 2569
BstNI	CCWGG	5 cut(s)	681, 1523, 1757, 2361, 2415
BstNSI	RCATGY	2 cut(s)	374, 2013
BstSCI	CCNGG	8 cut(s)	102, 337, 679, 763, 1521, 1755, 2359, 2413
BstSFI	CTRYAG	3 cut(s)	1044, 2302, 2542
BstSLI	GKGCMC	2 cut(s)	179, 1244
BstUI	CGCG	2 cut(s)	72, 111
BstV1I	GCAGC	3 cut(s)	1646, 1684, 2547
BstV2I	GAAGAC	1 cut(s)	888
BstX2I	RGATCY	1 cut(s)	541
BstYI	RGATCY	1 cut(s)	541
Bsu15I	ATCGAT	1 cut(s)	396
Bsu36I	CCTNAGG	1 cut(s)	2613
BsuRI	GGCC	7 cut(s)	89, 116, 346, 596, 717, 1118, 1791
BsuTUI	ATCGAT	1 cut(s)	396
BtgZI	GCGATG	1 cut(s)	135
BtsIMutI	CAGTG	4 cut(s)	179, 921, 2334, 2649
Cac8I	GCNNGC	5 cut(s)	87, 118, 348, 594, 2325
CaiI	CAGNNNCTG	1 cut(s)	1457
CciI	TCATGA	2 cut(s)	571, 1315
CfoI	GCGC	1 cut(s)	77
Cfr10I	RCCGGY	1 cut(s)	85
Cfr13I	GGNCC	2 cut(s)	1760, 2000
ClaI	ATCGAT	1 cut(s)	396
CseI	GACGC	1 cut(s)	1235
CspCI	CAANNNNNGTGG	2 cut(s)	1406, 1441
DdeI	CTNAG	7 cut(s)	194, 463, 723, 800, 1838, 2056, 2613
DinI	GGCGCC	1 cut(s)	76
DrdI	GACNNNNNNGTC	2 cut(s)	584, 1532
DseDI	GACNNNNNNGTC	2 cut(s)	584, 1532
EaeI	YGGCCR	4 cut(s)	87, 715, 1116, 1789
Eam1104I	CTCTTC	2 cut(s)	1062, 2253
EarI	CTCTTC	2 cut(s)	1062, 2253
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	2 cut(s)	130, 2371
Eco24I	GRGCYC	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	466
Eco32I	GATATC	1 cut(s)	394
Eco47I	GGWCC	2 cut(s)	1760, 2000
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	1206
Eco81I	CCTNAGG	1 cut(s)	2613
EcoICRI	GAGCTC	1 cut(s)	193
EcoO109I	RGGNCCY	1 cut(s)	1760
EcoRI	GAATTC	1 cut(s)	607
EcoRII	CCWGG	5 cut(s)	679, 1521, 1755, 2359, 2413
EcoRV	GATATC	1 cut(s)	394
EcoT14I	CCWWGG	2 cut(s)	130, 2371
EcoT38I	GRGCYC	1 cut(s)	195
EgeI	GGCGCC	1 cut(s)	76
EheI	GGCGCC	1 cut(s)	76
ErhI	CCWWGG	2 cut(s)	130, 2371
Esp3I	CGTCTC	1 cut(s)	2073
FalI	AAGNNNNNCTT	2 cut(s)	2258, 2290
FaqI	GGGAC	3 cut(s)	955, 1746, 2476
FauNDI	CATATG	2 cut(s)	1341, 2532
FbaI	TGATCA	1 cut(s)	1312
Fnu4HI	GCNGC	4 cut(s)	73, 1635, 1698, 2561
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	4 cut(s)	73, 1635, 1698, 2561
FspBI	CTAG	9 cut(s)	219, 425, 488, 945, 981, 1439, 1667, 1748, 1913
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	4 cut(s)	73, 1635, 1698, 2561
GsuI	CTGGAG	2 cut(s)	762, 2121
HaeII	RGCGCY	1 cut(s)	78
HaeIII	GGCC	7 cut(s)	89, 116, 346, 596, 717, 1118, 1791
HapII	CCGG	4 cut(s)	86, 103, 339, 765
HgaI	GACGC	1 cut(s)	1235
HhaI	GCGC	1 cut(s)	77
Hin1I	GRCGYC	1 cut(s)	75
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HincII	GTYRAC	5 cut(s)	363, 904, 1225, 2071, 2485
HindII	GTYRAC	5 cut(s)	363, 904, 1225, 2071, 2485
HindIII	AAGCTT	2 cut(s)	266, 2432
HinfI	GANTC	9 cut(s)	16, 125, 1007, 1079, 1744, 1900, 1950, 2134, 2496
HpaII	CCGG	4 cut(s)	86, 103, 339, 765
HphI	GGTGA	6 cut(s)	34, 452, 1523, 1594, 1784, 2045
Hpy99I	CGWCG	4 cut(s)	14, 56, 326, 1124
HpyAV	CCTTC	7 cut(s)	308, 590, 931, 1339, 2376, 2413, 2615
HpyCH4IV	ACGT	1 cut(s)	1833
HpyF10VI	GCNNNNNNNGC	7 cut(s)	117, 199, 662, 801, 1631, 1706, 2569
HpyF3I	CTNAG	7 cut(s)	194, 463, 723, 800, 1838, 2056, 2613
HpySE526I	ACGT	1 cut(s)	1833
Hsp92I	GRCGYC	1 cut(s)	75
HspAI	GCGC	1 cut(s)	75
KasI	GGCGCC	1 cut(s)	74
KflI	GGGWCCC	1 cut(s)	1760
KroI	GCCGGC	1 cut(s)	85
KroNI	GCCGGC	1 cut(s)	87
Ksp22I	TGATCA	1 cut(s)	1312
LmnI	GCTCC	2 cut(s)	190, 1622
Lsp1109I	GCAGC	3 cut(s)	1646, 1684, 2547
LweI	GCATC	6 cut(s)	145, 544, 824, 1063, 1669, 1744
MaeI	CTAG	9 cut(s)	219, 425, 488, 945, 981, 1439, 1667, 1748, 1913
MaeII	ACGT	1 cut(s)	1833
MaeIII	GTNAC	6 cut(s)	1092, 1100, 1669, 2098, 2252, 2338
MboII	GAAGA	7 cut(s)	847, 888, 1079, 1169, 1220, 1901, 2270
MflI	RGATCY	1 cut(s)	541
MhlI	GDGCHC	3 cut(s)	179, 195, 1244
MlsI	TGGCCA	1 cut(s)	717
MluNI	TGGCCA	1 cut(s)	717
Mly113I	GGCGCC	1 cut(s)	75
MlyI	GAGTC	6 cut(s)	119, 1753, 1909, 1944, 2128, 2490
MmeI	TCCRAC	6 cut(s)	33, 345, 1514, 1516, 1835, 2462
Mox20I	TGGCCA	1 cut(s)	717
MroNI	GCCGGC	1 cut(s)	85
MroXI	GAANNNNTTC	1 cut(s)	98
MscI	TGGCCA	1 cut(s)	717
MslI	CAYNNNNRTG	4 cut(s)	564, 681, 1394, 1689
Msp20I	TGGCCA	1 cut(s)	717
MspA1I	CMGCKG	1 cut(s)	1637
MspCI	CTTAAG	3 cut(s)	769, 1739, 2156
MspI	CCGG	4 cut(s)	86, 103, 339, 765
MspR9I	CCNGG	8 cut(s)	104, 339, 681, 765, 1523, 1757, 2361, 2415
Mva1269I	GAATGC	1 cut(s)	934
MvaI	CCWGG	5 cut(s)	681, 1523, 1757, 2361, 2415
MvnI	CGCG	2 cut(s)	72, 111
MwoI	GCNNNNNNNGC	7 cut(s)	117, 199, 662, 801, 1631, 1706, 2569
NaeI	GCCGGC	1 cut(s)	87
NarI	GGCGCC	1 cut(s)	75
NciI	CCSGG	3 cut(s)	104, 339, 765
NdeI	CATATG	2 cut(s)	1341, 2532
NgoMIV	GCCGGC	1 cut(s)	85
NlaIV	GGNNCC	9 cut(s)	76, 282, 319, 1387, 1520, 1761, 1762, 1809, 2358
NmeAIII	GCCGAG	1 cut(s)	958
NmuCI	GTSAC	4 cut(s)	1100, 1669, 2252, 2338
NspI	RCATGY	2 cut(s)	374, 2013
PagI	TCATGA	2 cut(s)	571, 1315
PasI	CCCWGGG	1 cut(s)	1756
PcsI	WCGNNNNNNNCGW	1 cut(s)	2079
PctI	GAATGC	1 cut(s)	934
PdiI	GCCGGC	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	98
PfeI	GAWTC	3 cut(s)	16, 1007, 1079
PflMI	CCANNNNNTGG	1 cut(s)	2444
PfoI	TCCNGGA	2 cut(s)	102, 2413
PkrI	GCNGC	4 cut(s)	74, 1636, 1699, 2562
PleI	GAGTC	6 cut(s)	119, 1752, 1908, 1944, 2128, 2490
PluTI	GGCGCC	1 cut(s)	78
PpsI	GAGTC	6 cut(s)	119, 1752, 1908, 1944, 2128, 2490
PpuMI	RGGWCCY	1 cut(s)	1760
PshBI	ATTAAT	2 cut(s)	252, 1644
Psp124BI	GAGCTC	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	1760
Psp6I	CCWGG	5 cut(s)	679, 1521, 1755, 2359, 2413
PspGI	CCWGG	5 cut(s)	679, 1521, 1755, 2359, 2413
PspN4I	GGNNCC	9 cut(s)	76, 282, 319, 1387, 1520, 1761, 1762, 1809, 2358
PspPI	GGNCC	2 cut(s)	1760, 2000
PspPPI	RGGWCCY	1 cut(s)	1760
PstI	CTGCAG	1 cut(s)	1048
PstNI	CAGNNNCTG	1 cut(s)	1457
PsuI	RGATCY	1 cut(s)	541
PvuII	CAGCTG	1 cut(s)	1637
RseI	CAYNNNNRTG	4 cut(s)	564, 681, 1394, 1689
SacI	GAGCTC	1 cut(s)	195
SatI	GCNGC	4 cut(s)	73, 1635, 1698, 2561
Sau96I	GGNCC	2 cut(s)	1760, 2000
ScaI	AGTACT	2 cut(s)	775, 1322
SchI	GAGTC	6 cut(s)	119, 1753, 1909, 1944, 2128, 2490
ScrFI	CCNGG	8 cut(s)	104, 339, 681, 765, 1523, 1757, 2361, 2415
SduI	GDGCHC	3 cut(s)	179, 195, 1244
SfaNI	GCATC	6 cut(s)	145, 544, 824, 1063, 1669, 1744
SfcI	CTRYAG	3 cut(s)	1044, 2302, 2542
SfoI	GGCGCC	1 cut(s)	76
SinI	GGWCC	2 cut(s)	1760, 2000
SmiMI	CAYNNNNRTG	4 cut(s)	564, 681, 1394, 1689
SmlI	CTYRAG	5 cut(s)	269, 769, 1710, 1739, 2156
SmoI	CTYRAG	5 cut(s)	269, 769, 1710, 1739, 2156
SpeI	ACTAGT	3 cut(s)	487, 944, 1666
SsiI	CCGC	2 cut(s)	72, 1256
SspDI	GGCGCC	1 cut(s)	74
SspMI	CTAG	9 cut(s)	219, 425, 488, 945, 981, 1439, 1667, 1748, 1913
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	8 cut(s)	102, 337, 679, 763, 1521, 1755, 2359, 2413
StyI	CCWWGG	2 cut(s)	130, 2371
TaiI	ACGT	1 cut(s)	1836
TaqI	TCGA	5 cut(s)	59, 396, 1065, 2132, 2475
TatI	WGTACW	5 cut(s)	367, 773, 1320, 1448, 2593
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	3 cut(s)	16, 1007, 1079
TscAI	CASTG	4 cut(s)	179, 921, 2341, 2656
TseFI	GTSAC	4 cut(s)	1100, 1669, 2252, 2338
TseI	GCWGC	3 cut(s)	1634, 1697, 2560
Tsp45I	GTSAC	4 cut(s)	1100, 1669, 2252, 2338
TspGWI	ACGGA	4 cut(s)	221, 339, 1088, 1457
TspRI	CASTG	4 cut(s)	179, 921, 2341, 2656
Van91I	CCANNNNNTGG	1 cut(s)	2444
Vha464I	CTTAAG	3 cut(s)	769, 1739, 2156
VneI	GTGCAC	1 cut(s)	1240
VpaK11BI	GGWCC	2 cut(s)	1760, 2000
VspI	ATTAAT	2 cut(s)	252, 1644
XapI	RAATTY	6 cut(s)	62, 98, 607, 844, 1614, 1722
XbaI	TCTAGA	1 cut(s)	1438
XceI	RCATGY	2 cut(s)	374, 2013
XmnI	GAANNNNTTC	1 cut(s)	98
XspI	CTAG	9 cut(s)	219, 425, 488, 945, 981, 1439, 1667, 1748, 1913
ZrmI	AGTACT	2 cut(s)	775, 1322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.