pycom12g15180

Defective in exine formation

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
17537456 .. 17540789
3334 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g15180.7

Sequence Viewer

Length: 1860 bp
ATGGTAAATGCATCAAATCCAGAGAATAAAGGGGAAACAAATTCAACTCAGGTGGAAACAGTCATCAAGCTGCCTACAGGCACGGACAATTCTTCTGTGAAAAAATTGTCAGAGGAAACTGTTAATGTAGTGAATGGGACTAGTTCTGGGAGACGGCTTTTAGAAGATAAAAAGTCAAGTGAATCGCAGGAGGGTAGTTCTGAACCCAAAGATAATAATAAGGAGGATGTTCCTGTTGCAACTGTACAAAATGAGGGAAGCTTGGAAGCAGATGCTGATTCATCTTTTGAGTTGTTCCGTAGCAGTGAGGAACTGGCTGATGAATATAGTTATGACTATGATGATTATGCTGATGAATCAATGTGGGGAGATGAGGAATGGGCTGAAGAGCAGCACGAGAAAATGGAGGATTATGTTGATGTTGATGCACACATACTCTGCACTCCTGTCATAGCAGACATAGACAATGATGGAGTATCAGAAATGGTTGTTGCTGTATCTTACTTCTTTGATAGCGAGTATTATGAGTCCAACGAAGATCATCGAAAGGAATTGGGTGACATTGATATTACAAAATATGTTGCTGGCTCAATAGTTGTGTTTAATCTCGACACAAAGCAAGTTAAGTGGACTGCGGAACTAGATCTGAGTACAGAGACTGCGAAGTTCCGTGCTCATATATATTCTTCTCCAACTGTAGTGGATTTGGATGGTGACGGGAATCTGGACATTCTTGTTGGAACTTCCTATGGCTTGTTCTATGTCTTGGATCATCATGGCAAGGTCAGAGAAAAATTTCCTCTTGAAATGGCTGAAATTCAAGGAGCTGTTGTTGCTGCTGATATCAATGATGATGGAAAAATTGAACTAGTGACTACTGATGCTCATGGAAATGTTGCTGCATGGACTACAAAAGGAGTAGAAATTTGGGAAAAGCATCTTAAGAGTCTAGTTCCCCAGGGTCCCACTATTGGTGATGTTGATGGGGATGGCCATACTGATGTTGTGGTTCCAACTTTATCCGGCAACATATATGTTCTTAGTGGCAAAGATGGGTCAATTGTTCGTCCTTATCCATATAGAACTCATGGGAGAGTTATGAATCAAGTTCTTCTAGTTGATTTAAGTAAAAAAGGAGAGAAAAAGAAGGGACTCACCCTTGTTACAACTTCGTTTGATGGTTACTTGTACCTAATTGATGGACCTACATCATGCGCTGATGTGGTTGACATTGGTGAAACTTCATATAGCATGGTCTTAGCAGACAATGTTGATGGTGGAGATGATCTTGATCTTATTGTTTCAACCATGAATGGCAATGTTTTTTGCTTCTCGACTCCTGCTTCGCATCATCCCCTCAAGGCATGGAGGTCGCCTAATCAAGGAAGAAATCATGTTGCAAATAGGCATAACCGTGAAGGTATCTTTGTTTCACATTCATCAAGAGCTTTCCGTGATGAAGAAGGCAAGAACTTTTGGGTGGAGTTCGAGATCATAGATAGCTATAGATACCCATCGGGGTTGCAAGCACCCTATAATGTCACAGTAACGCTGTTAGTGCCAGGTAATTACCAAGGAGAGAGAAGGATAAGAATAAACGAGACCTACAATCGTCCTGGAAAGCATAATATGAAGCTTCCGACAGTTGGTGTAAGGACTACGGGTACTGTTTTGGTGGAGATGGTTGACAAGAACGGACTTTATTTTTCAGATGATTTCTCCCTCACATTCCACATGTATTACTATAGACTGTTGAAATGGCTGCTCGTCCTACCGATGCTTGGAATGTTTGGCATACTTGTAATCCTACGTCCTCAAGAAGCTGTGCCCTTGCCATCATTTTCGCGAAATGCTGACTAA

Protein Analysis

620

Amino Acids

68.92

Weight (kDa)

4.66

Isoelectric Point (pI)

32.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010407)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1846
AciI CCGC 1 cut(s) 635
AclWI GGATC 1 cut(s) 777
AcoI YGGCCR 1 cut(s) 991
AcsI RAATTY 4 cut(s) 40, 794, 816, 924
AcuI CTGAAG 1 cut(s) 405
AfaI GTAC 4 cut(s) 246, 652, 1190, 1666
AfiI CCNNNNNNNGG 4 cut(s) 971, 1382, 1646, 1781
AflII CTTAAG 1 cut(s) 941
AflIII ACRYGT 1 cut(s) 1734
AgsI TTSAA 6 cut(s) 45, 806, 821, 866, 1305, 1756
AhlI ACTAGT 2 cut(s) 140, 868
AjnI CCWGG 3 cut(s) 957, 1561, 1615
AluBI AGCT 7 cut(s) 70, 261, 827, 1448, 1503, 1636, 1823
AluI AGCT 7 cut(s) 70, 261, 827, 1448, 1503, 1636, 1823
Alw21I GWGCWC 1 cut(s) 676
Alw26I GTCTC 3 cut(s) 145, 650, 1595
AlwI GGATC 1 cut(s) 777
AlwNI CAGNNNCTG 2 cut(s) 275, 659
AoxI GGCC 1 cut(s) 991
ApeKI GCWGC 5 cut(s) 70, 391, 836, 899, 1762
ApoI RAATTY 4 cut(s) 40, 794, 816, 924
ArsI GACNNNNNNTTYG 2 cut(s) 1327, 1359
Asp700I GAANNNNTTC 1 cut(s) 795
AspLEI GCGC 1 cut(s) 1217
AspS9I GGNCC 2 cut(s) 962, 1202
AsuHPI GGTGA 5 cut(s) 569, 725, 986, 1147, 1247
AvaII GGWCC 2 cut(s) 962, 1202
BaeGI GKGCMC 1 cut(s) 1830
BalI TGGCCA 1 cut(s) 993
BauI CACGAG 1 cut(s) 395
Bbv12I GWGCWC 1 cut(s) 676
BbvI GCAGC 5 cut(s) 57, 403, 823, 886, 1749
BceAI ACGGC 1 cut(s) 170
BcgI CGANNNNNNTGC 2 cut(s) 1353, 1387
BciT130I CCWGG 3 cut(s) 959, 1563, 1617
BcoDI GTCTC 3 cut(s) 145, 650, 1595
BcuI ACTAGT 2 cut(s) 140, 868
BfaI CTAG 5 cut(s) 141, 641, 869, 950, 1115
BfmI CTRYAG 4 cut(s) 75, 696, 1504, 1744
BfrI CTTAAG 1 cut(s) 941
BglII AGATCT 1 cut(s) 643
BisI GCNGC 5 cut(s) 71, 392, 837, 900, 1763
BlsI GCNGC 5 cut(s) 72, 393, 838, 901, 1764
Bme1390I CCNGG 3 cut(s) 959, 1563, 1617
Bme18I GGWCC 2 cut(s) 962, 1202
BmgT120I GGNCC 2 cut(s) 962, 1202
BmiI GGNNCC 3 cut(s) 963, 964, 1011
BmrFI CCNGG 3 cut(s) 959, 1563, 1617
BmsI GCATC 7 cut(s) 20, 262, 415, 871, 946, 1357, 1767
BpuEI CTTGAG 2 cut(s) 1343, 1800
BsaBI GATNNNNATC 2 cut(s) 1290, 1513
BsaI GGTCTC 1 cut(s) 1595
BsaJI CCNNGG 3 cut(s) 957, 958, 1573
BsaXI ACNNNNNCTCC 2 cut(s) 816, 846
Bsc4I CCNNNNNNNGG 4 cut(s) 971, 1382, 1646, 1781
Bse1I ACTGG 1 cut(s) 318
Bse3DI GCAATG 1 cut(s) 1324
Bse8I GATNNNNATC 2 cut(s) 1290, 1513
BseBI CCWGG 3 cut(s) 959, 1563, 1617
BseDI CCNNGG 3 cut(s) 957, 958, 1573
BseGI GGATG 4 cut(s) 232, 715, 994, 1351
BseJI GATNNNNATC 2 cut(s) 1290, 1513
BseLI CCNNNNNNNGG 4 cut(s) 971, 1382, 1646, 1781
BseMI GCAATG 1 cut(s) 1324
BseMII CTCAG 2 cut(s) 62, 638
BseNI ACTGG 1 cut(s) 318
BseSI GKGCMC 1 cut(s) 1830
BseXI GCAGC 5 cut(s) 57, 403, 823, 886, 1749
BsgI GTGCAG 1 cut(s) 424
Bsh1236I CGCG 1 cut(s) 1846
BshFI GGCC 1 cut(s) 993
BsiHKAI GWGCWC 1 cut(s) 676
BsiSI CCGG 1 cut(s) 1023
BslFI GGGAC 3 cut(s) 151, 948, 1164
BslI CCNNNNNNNGG 4 cut(s) 971, 1382, 1646, 1781
BsmAI GTCTC 3 cut(s) 145, 650, 1595
BsmBI CGTCTC 1 cut(s) 145
BsmFI GGGAC 3 cut(s) 151, 948, 1164
BsnI GGCC 1 cut(s) 993
Bso31I GGTCTC 1 cut(s) 1595
Bsp1286I GDGCHC 2 cut(s) 676, 1830
Bsp1407I TGTACA 1 cut(s) 244
Bsp143I GATC 6 cut(s) 538, 643, 769, 1285, 1291, 1491
Bsp68I TCGCGA 1 cut(s) 1846
BspACI CCGC 1 cut(s) 635
BspANI GGCC 1 cut(s) 993
BspCNI CTCAG 2 cut(s) 61, 639
BspFNI CGCG 1 cut(s) 1846
BspLI GGNNCC 3 cut(s) 963, 964, 1011
BspPI GGATC 1 cut(s) 777
BspQI GCTCTTC 1 cut(s) 381
BspTI CTTAAG 1 cut(s) 941
BspTNI GGTCTC 1 cut(s) 1595
BsrDI GCAATG 1 cut(s) 1324
BsrGI TGTACA 1 cut(s) 244
BsrI ACTGG 1 cut(s) 318
BssECI CCNNGG 3 cut(s) 957, 958, 1573
BssMI GATC 6 cut(s) 538, 643, 769, 1285, 1291, 1491
BssSI CACGAG 1 cut(s) 395
BssT1I CCWWGG 1 cut(s) 1573
Bst2BI CACGAG 1 cut(s) 395
Bst2UI CCWGG 3 cut(s) 959, 1563, 1617
Bst4CI ACNGT 9 cut(s) 61, 121, 244, 697, 1415, 1546, 1645, 1669, 1752
Bst6I CTCTTC 1 cut(s) 381
BstAFI CTTAAG 1 cut(s) 941
BstAUI TGTACA 1 cut(s) 244
BstC8I GCNNGC 2 cut(s) 586, 1527
BstDEI CTNAG 4 cut(s) 48, 647, 1040, 1258
BstENI CCTNNNNNAGG 1 cut(s) 1380
BstF5I GGATG 4 cut(s) 232, 715, 994, 1351
BstFNI CGCG 1 cut(s) 1846
BstHHI GCGC 1 cut(s) 1217
BstKTI GATC 6 cut(s) 541, 646, 772, 1288, 1294, 1494
BstMAI GTCTC 3 cut(s) 145, 650, 1595
BstMBI GATC 6 cut(s) 538, 643, 769, 1285, 1291, 1491
BstMWI GCNNNNNNNGC 2 cut(s) 833, 1558
BstNI CCWGG 3 cut(s) 959, 1563, 1617
BstNSI RCATGY 1 cut(s) 1738
BstSCI CCNGG 3 cut(s) 957, 1561, 1615
BstSFI CTRYAG 4 cut(s) 75, 696, 1504, 1744
BstSLI GKGCMC 1 cut(s) 1830
BstUI CGCG 1 cut(s) 1846
BstV1I GCAGC 5 cut(s) 57, 403, 823, 886, 1749
BstX2I RGATCY 1 cut(s) 643
BstYI RGATCY 1 cut(s) 643
BsuRI GGCC 1 cut(s) 993
BtsCI GGATG 4 cut(s) 232, 715, 994, 1351
BtsI GCAGTG 1 cut(s) 310
BtsIMutI CAGTG 1 cut(s) 310
BtuMI TCGCGA 1 cut(s) 1846
Cac8I GCNNGC 2 cut(s) 586, 1527
CaiI CAGNNNCTG 2 cut(s) 275, 659
CfoI GCGC 1 cut(s) 1217
Cfr13I GGNCC 2 cut(s) 962, 1202
Csp6I GTAC 4 cut(s) 245, 651, 1189, 1665
CspCI CAANNNNNGTGG 6 cut(s) 33, 68, 608, 643, 681, 716
CviQI GTAC 4 cut(s) 245, 651, 1189, 1665
DdeI CTNAG 4 cut(s) 48, 647, 1040, 1258
DpnI GATC 6 cut(s) 540, 645, 771, 1287, 1293, 1493
DpnII GATC 6 cut(s) 538, 643, 769, 1285, 1291, 1491
EaeI YGGCCR 1 cut(s) 991
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
Eco130I CCWWGG 1 cut(s) 1573
Eco31I GGTCTC 1 cut(s) 1595
Eco32I GATATC 1 cut(s) 844
Eco47I GGWCC 2 cut(s) 962, 1202
Eco57I CTGAAG 1 cut(s) 405
EcoNI CCTNNNNNAGG 1 cut(s) 1380
EcoO109I RGGNCCY 1 cut(s) 962
EcoRII CCWGG 3 cut(s) 957, 1561, 1615
EcoRV GATATC 1 cut(s) 844
EcoT14I CCWWGG 1 cut(s) 1573
EcoT22I ATGCAT 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 1573
Esp3I CGTCTC 1 cut(s) 145
FaqI GGGAC 3 cut(s) 151, 948, 1164
Fnu4HI GCNGC 5 cut(s) 71, 392, 837, 900, 1763
FokI GGATG 4 cut(s) 239, 722, 1001, 1338
Fsp4HI GCNGC 5 cut(s) 71, 392, 837, 900, 1763
FspBI CTAG 5 cut(s) 141, 641, 869, 950, 1115
GlaI GCGC 1 cut(s) 1216
GluI GCNGC 5 cut(s) 71, 392, 837, 900, 1763
HaeIII GGCC 1 cut(s) 993
HapII CCGG 1 cut(s) 1023
HhaI GCGC 1 cut(s) 1217
Hin6I GCGC 1 cut(s) 1215
HinP1I GCGC 1 cut(s) 1215
HincII GTYRAC 2 cut(s) 1228, 1687
HindII GTYRAC 2 cut(s) 1228, 1687
HindIII AAGCTT 2 cut(s) 259, 1634
HinfI GANTC 9 cut(s) 182, 278, 356, 527, 721, 946, 1102, 1152, 1336
HpaII CCGG 1 cut(s) 1023
HphI GGTGA 5 cut(s) 569, 725, 986, 1147, 1247
Hpy166II GTNNAC 3 cut(s) 630, 1228, 1687
Hpy188I TCNGA 7 cut(s) 112, 202, 481, 648, 788, 1641, 1711
Hpy8I GTNNAC 3 cut(s) 630, 1228, 1687
HpyAV CCTTC 4 cut(s) 1141, 1412, 1457, 1578
HpyCH4III ACNGT 9 cut(s) 61, 121, 244, 697, 1415, 1546, 1645, 1669, 1752
HpyCH4IV ACGT 1 cut(s) 1810
HpyCH4V TGCA 7 cut(s) 11, 239, 428, 441, 902, 1400, 1525
HpyF10VI GCNNNNNNNGC 2 cut(s) 833, 1558
HpyF3I CTNAG 4 cut(s) 48, 647, 1040, 1258
HpySE526I ACGT 1 cut(s) 1810
HspAI GCGC 1 cut(s) 1215
KflI GGGWCCC 1 cut(s) 962
Kzo9I GATC 6 cut(s) 538, 643, 769, 1285, 1291, 1491
LguI GCTCTTC 1 cut(s) 381
LmnI GCTCC 1 cut(s) 824
Lsp1109I GCAGC 5 cut(s) 57, 403, 823, 886, 1749
LweI GCATC 7 cut(s) 20, 262, 415, 871, 946, 1357, 1767
MaeI CTAG 5 cut(s) 141, 641, 869, 950, 1115
MaeII ACGT 1 cut(s) 1810
MaeIII GTNAC 7 cut(s) 557, 713, 871, 1162, 1181, 1540, 1546
MalI GATC 6 cut(s) 540, 645, 771, 1287, 1293, 1493
MboI GATC 6 cut(s) 538, 643, 769, 1285, 1291, 1491
MboII GAAGA 8 cut(s) 84, 176, 398, 548, 678, 1103, 1398, 1472
MfeI CAATTG 1 cut(s) 1059
MflI RGATCY 1 cut(s) 643
MhlI GDGCHC 2 cut(s) 676, 1830
MlsI TGGCCA 1 cut(s) 993
MluNI TGGCCA 1 cut(s) 993
MlyI GAGTC 4 cut(s) 536, 955, 1146, 1330
MmeI TCCRAC 5 cut(s) 555, 716, 718, 1037, 1664
Mox20I TGGCCA 1 cut(s) 993
Mph1103I ATGCAT 1 cut(s) 13
MroXI GAANNNNTTC 1 cut(s) 795
MscI TGGCCA 1 cut(s) 993
MseI TTAA 5 cut(s) 123, 603, 624, 942, 1124
MslI CAYNNNNRTG 3 cut(s) 891, 999, 1413
Msp20I TGGCCA 1 cut(s) 993
MspCI CTTAAG 1 cut(s) 941
MspI CCGG 1 cut(s) 1023
MspR9I CCNGG 3 cut(s) 959, 1563, 1617
MunI CAATTG 1 cut(s) 1059
MvaI CCWGG 3 cut(s) 959, 1563, 1617
MvnI CGCG 1 cut(s) 1846
MwoI GCNNNNNNNGC 2 cut(s) 833, 1558
NdeII GATC 6 cut(s) 538, 643, 769, 1285, 1291, 1491
NlaIV GGNNCC 3 cut(s) 963, 964, 1011
NmuCI GTSAC 4 cut(s) 557, 713, 871, 1540
NruI TCGCGA 1 cut(s) 1846
NsiI ATGCAT 1 cut(s) 13
NspI RCATGY 1 cut(s) 1738
PasI CCCWGGG 1 cut(s) 958
PciI ACATGT 1 cut(s) 1734
PciSI GCTCTTC 1 cut(s) 381
PdmI GAANNNNTTC 1 cut(s) 795
PfeI GAWTC 5 cut(s) 182, 278, 356, 721, 1102
PfoI TCCNGGA 1 cut(s) 1615
PkrI GCNGC 5 cut(s) 72, 393, 838, 901, 1764
PleI GAGTC 4 cut(s) 535, 954, 1146, 1330
PpsI GAGTC 4 cut(s) 535, 954, 1146, 1330
PpuMI RGGWCCY 1 cut(s) 962
PscI ACATGT 1 cut(s) 1734
Psp5II RGGWCCY 1 cut(s) 962
Psp6I CCWGG 3 cut(s) 957, 1561, 1615
PspGI CCWGG 3 cut(s) 957, 1561, 1615
PspN4I GGNNCC 3 cut(s) 963, 964, 1011
PspPI GGNCC 2 cut(s) 962, 1202
PspPPI RGGWCCY 1 cut(s) 962
PstNI CAGNNNCTG 2 cut(s) 275, 659
PsuI RGATCY 1 cut(s) 643
RruI TCGCGA 1 cut(s) 1846
RsaI GTAC 4 cut(s) 246, 652, 1190, 1666
RsaNI GTAC 4 cut(s) 245, 651, 1189, 1665
RseI CAYNNNNRTG 3 cut(s) 891, 999, 1413
SapI GCTCTTC 1 cut(s) 381
SaqAI TTAA 5 cut(s) 123, 603, 624, 942, 1124
SatI GCNGC 5 cut(s) 71, 392, 837, 900, 1763
Sau3AI GATC 6 cut(s) 538, 643, 769, 1285, 1291, 1491
Sau96I GGNCC 2 cut(s) 962, 1202
SchI GAGTC 4 cut(s) 536, 955, 1146, 1330
ScrFI CCNGG 3 cut(s) 959, 1563, 1617
SduI GDGCHC 2 cut(s) 676, 1830
SfaNI GCATC 7 cut(s) 20, 262, 415, 871, 946, 1357, 1767
SfcI CTRYAG 4 cut(s) 75, 696, 1504, 1744
SinI GGWCC 2 cut(s) 962, 1202
SmiMI CAYNNNNRTG 3 cut(s) 891, 999, 1413
SmlI CTYRAG 3 cut(s) 941, 1358, 1815
SmoI CTYRAG 3 cut(s) 941, 1358, 1815
SpeI ACTAGT 2 cut(s) 140, 868
SsiI CCGC 1 cut(s) 635
SspMI CTAG 5 cut(s) 141, 641, 869, 950, 1115
StyD4I CCNGG 3 cut(s) 957, 1561, 1615
StyI CCWWGG 1 cut(s) 1573
TaaI ACNGT 9 cut(s) 61, 121, 244, 697, 1415, 1546, 1645, 1669, 1752
TaiI ACGT 1 cut(s) 1813
TaqI TCGA 4 cut(s) 544, 609, 1334, 1488
TatI WGTACW 2 cut(s) 244, 650
TfiI GAWTC 5 cut(s) 182, 278, 356, 721, 1102
Tru1I TTAA 5 cut(s) 123, 603, 624, 942, 1124
Tru9I TTAA 5 cut(s) 123, 603, 624, 942, 1124
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 4 cut(s) 557, 713, 871, 1540
TseI GCWGC 5 cut(s) 70, 391, 836, 899, 1762
Tsp45I GTSAC 4 cut(s) 557, 713, 871, 1540
TspDTI ATGAA 9 cut(s) 270, 336, 369, 1115, 1233, 1325, 1428, 1473, 1646
TspGWI ACGGA 5 cut(s) 98, 287, 659, 1442, 1710
TspRI CASTG 1 cut(s) 310
Vha464I CTTAAG 1 cut(s) 941
VpaK11BI GGWCC 2 cut(s) 962, 1202
XagI CCTNNNNNAGG 1 cut(s) 1380
XapI RAATTY 4 cut(s) 40, 794, 816, 924
XceI RCATGY 1 cut(s) 1738
XmnI GAANNNNTTC 1 cut(s) 795
XspI CTAG 5 cut(s) 141, 641, 869, 950, 1115
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.