pycom04g13970

DUF761-associated sequence motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0011783
Physical Location & Seq
Reverse (-)
16897540 .. 16899022
1483 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1257 bp
ATGAGTGGTAACTCAGCTCATCAGACCTCTGGCTGTTTCAATGGCATCCTGCGCCGGCTTTTGTGCAATGGAAGCGTTCCAACACACCCATCAGATCAAATTCCAGAATCTAACACTACCCAACTCGCAAAATCCTCCAGAAAACAAAACCCTGATCCCAAAATTCAATCTTCAGCTTCTGTCACGCCTGGAATCGTGGCAAGGCTGATGGGTTTGGACTCGTTGCCGGAAACAAATTGGGTTTCAAGAGCCCCGGAGTTGGTCAGTCGAAGTAGGTCGTTGAGTTTTGCAGATTACTTGATGGGTTTTGACTCGAATGATCAGCAGGATCATCCGCATCGTAGGGTTCGAACCTCGGTTTCTTTTCGTGAAGTTCCGGAGGTTATGCATCGTCAGAAGAACAGCCATGATTTTCTGGTTGTGTGTTTGGACAATGTGGGTGAGAAATCGAAGGGAGTTGGGTCGATGGTGAAGAAATCTGAGGTGGGGTTTGGGGAACTGGGGCAGGGGAAGAAGGAACAGAGTAGTAAGAAGAACAAGGTGAAGAATGATGAGATTATGAAGGAGAAGAAGGAAAAAACTGTAATGATAAAGCAAAGCAAGAAGATTTCTAGGTTAAAAGATGAGCCCAGAAGGGAAATTGGTGCAAAATCTTCAAAGGGTTACAAAAATGCTGGTGCGAATTTGAAGGGGGAGAGCGGAAATCTTGCATTGAAGAAAGCAACCGAGAAGAAGAAAGTTGTGGTGGAACCAAAAATCAAGAAGAGAAACCATAAAAATGAAGCTGAGAAGGGAAAAGAGGCTGCTGAATTTCATGGCTCCTCAGAGAACGATGCAAGCCCTGTTTCAGTTCTTGACATTGATGACATGTTGATCGAGCATGAAGCTTGGTTATCAGGATATTCAATTCCCATGGATTTGAACTCCACTGTGAAACCGTCACCAAAAGCTCCTTTTAGTGACAGCTCAGAAGTGAAGGCAGCAAAAAGGAAAGATTTTGAGCCGATTAACGAAGAGGAAACCAGAGACTACGCAAAGCTGCTGGCTTCCAAAATCCAAAATTGGACGGAGGAGGATTTGAAAGAATCAAACTGGGTGGCCAAGAATGTGGTCGGGTTCGAAGGTTTCGATGAAATCTGCGAGGAATTTGAAGGGCGGATCCTTGACACACTATTGCACCAGGCCATTGATGAATTTATTGAGATTTCTTATGAAAATATGTGGGGAAATCTGTGGACTTGCAATGCTGCTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

419

Amino Acids

46.68

Weight (kDa)

8.09

Isoelectric Point (pI)

44.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VARLMGL PF14383 62 - 79 3.4e-08 DUF761-associated sequence motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011783)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01370
fragaria_vesca FvH4_6g11320 FvH4_6g11320
malus_domestica MD04G1154900.v1.1 MD12G1168500.v1.1
prunus_persica Prupe.6G278700_v2.0.a1
pyrus_communis pycom04g13970 pycom12g16000
rosa_chinensis RchiOBHm_Chr3g0462881
rosa_laevigata RLG00000024826
rosa_multiflora Rmu_sc0000766.1_g000014 Rmu_sc0000766.1_g000015
rosa_roxburghii Rroxscaffold_6G00417130
rosa_rugosa Rorug03G0059600
rosa_samantha Rh3AG117900 Rh3BG121700 Rh3CG124600 Rh3DG123300
rosa_wichuraiana Rw3G010000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 699
AccIII TCCGGA 1 cut(s) 376
AciI CCGC 3 cut(s) 335, 699, 1156
AclWI GGATC 4 cut(s) 149, 336, 1153, 1166
AcoI YGGCCR 1 cut(s) 1098
AcsI RAATTY 6 cut(s) 99, 162, 682, 809, 1145, 1193
AcuI CTGAAG 1 cut(s) 156
AfiI CCNNNNNNNGG 1 cut(s) 259
AflIII ACRYGT 1 cut(s) 867
AjnI CCWGG 2 cut(s) 187, 1179
AluBI AGCT 7 cut(s) 17, 176, 785, 887, 950, 966, 1039
AluI AGCT 7 cut(s) 17, 176, 785, 887, 950, 966, 1039
Alw26I GTCTC 1 cut(s) 1020
AlwI GGATC 4 cut(s) 149, 336, 1153, 1166
AlwNI CAGNNNCTG 1 cut(s) 179
Aor13HI TCCGGA 1 cut(s) 376
AoxI GGCC 2 cut(s) 1098, 1182
ApeKI GCWGC 4 cut(s) 803, 980, 1039, 1247
ApoI RAATTY 6 cut(s) 99, 162, 682, 809, 1145, 1193
AspLEI GCGC 1 cut(s) 54
AsuC2I CCSGG 1 cut(s) 254
AsuHPI GGTGA 4 cut(s) 452, 481, 553, 933
AsuII TTCGAA 2 cut(s) 349, 1119
BalI TGGCCA 1 cut(s) 1100
BamHI GGATCC 1 cut(s) 1158
BanII GRGCYC 2 cut(s) 253, 630
BbvI GCAGC 4 cut(s) 790, 992, 1026, 1234
BccI CCATC 4 cut(s) 97, 202, 295, 460
BciT130I CCWGG 2 cut(s) 189, 1181
BclI TGATCA 1 cut(s) 319
BcnI CCSGG 1 cut(s) 254
BcoDI GTCTC 1 cut(s) 1020
BfaI CTAG 2 cut(s) 612, 1251
BisI GCNGC 4 cut(s) 804, 981, 1040, 1248
BlsI GCNGC 4 cut(s) 805, 982, 1041, 1249
Bme1390I CCNGG 3 cut(s) 189, 254, 1181
BmiI GGNNCC 3 cut(s) 750, 820, 1160
BmrFI CCNGG 3 cut(s) 189, 254, 1181
BmrI ACTGGG 2 cut(s) 509, 1102
BmsI GCATC 4 cut(s) 54, 346, 397, 823
BmuI ACTGGG 2 cut(s) 509, 1102
BpmI CTGGAG 1 cut(s) 121
Bpu14I TTCGAA 2 cut(s) 349, 1119
BpuMI CCSGG 1 cut(s) 254
BsaJI CCNNGG 3 cut(s) 252, 354, 912
BsaWI WCCGGW 1 cut(s) 376
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse118I RCCGGY 1 cut(s) 54
Bse1I ACTGG 2 cut(s) 504, 1097
Bse3DI GCAATG 2 cut(s) 73, 1249
BseAI TCCGGA 1 cut(s) 376
BseBI CCWGG 2 cut(s) 189, 1181
BseDI CCNNGG 3 cut(s) 252, 354, 912
BseGI GGATG 2 cut(s) 45, 331
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMI GCAATG 2 cut(s) 73, 1249
BseMII CTCAG 5 cut(s) 27, 471, 777, 837, 981
BseNI ACTGG 2 cut(s) 504, 1097
BseRI GAGGAG 2 cut(s) 811, 1085
BseXI GCAGC 4 cut(s) 790, 992, 1026, 1234
BshFI GGCC 2 cut(s) 1100, 1184
BsiSI CCGG 4 cut(s) 55, 227, 254, 377
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 1 cut(s) 1020
BsnI GGCC 2 cut(s) 1100, 1184
Bsp119I TTCGAA 2 cut(s) 349, 1119
Bsp1286I GDGCHC 2 cut(s) 253, 630
Bsp13I TCCGGA 1 cut(s) 376
Bsp143I GATC 6 cut(s) 94, 154, 319, 328, 873, 1158
Bsp19I CCATGG 1 cut(s) 912
BspACI CCGC 3 cut(s) 335, 699, 1156
BspANI GGCC 2 cut(s) 1100, 1184
BspCNI CTCAG 5 cut(s) 26, 472, 778, 836, 980
BspEI TCCGGA 1 cut(s) 376
BspLI GGNNCC 3 cut(s) 750, 820, 1160
BspPI GGATC 4 cut(s) 149, 336, 1153, 1166
BspT104I TTCGAA 2 cut(s) 349, 1119
BsrBI CCGCTC 1 cut(s) 699
BsrDI GCAATG 2 cut(s) 73, 1249
BsrFI RCCGGY 1 cut(s) 54
BsrI ACTGG 2 cut(s) 504, 1097
BssAI RCCGGY 1 cut(s) 54
BssECI CCNNGG 3 cut(s) 252, 354, 912
BssMI GATC 6 cut(s) 94, 154, 319, 328, 873, 1158
BssT1I CCWWGG 1 cut(s) 912
Bst2UI CCWGG 2 cut(s) 189, 1181
Bst4CI ACNGT 3 cut(s) 583, 931, 939
Bst6I CTCTTC 2 cut(s) 758, 1008
BstBI TTCGAA 2 cut(s) 349, 1119
BstC8I GCNNGC 3 cut(s) 56, 838, 1044
BstDEI CTNAG 5 cut(s) 13, 480, 786, 823, 967
BstDSI CCRYGG 1 cut(s) 912
BstF5I GGATG 2 cut(s) 45, 331
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 6 cut(s) 97, 157, 322, 331, 876, 1161
BstMAI GTCTC 1 cut(s) 1020
BstMBI GATC 6 cut(s) 94, 154, 319, 328, 873, 1158
BstMWI GCNNNNNNNGC 2 cut(s) 51, 72
BstNI CCWGG 2 cut(s) 189, 1181
BstNSI RCATGY 1 cut(s) 871
BstSCI CCNGG 3 cut(s) 187, 252, 1179
BstV1I GCAGC 4 cut(s) 790, 992, 1026, 1234
BstX2I RGATCY 1 cut(s) 1158
BstXI CCANNNNNNTGG 1 cut(s) 1108
BstYI RGATCY 1 cut(s) 1158
BsuRI GGCC 2 cut(s) 1100, 1184
BtgI CCRYGG 1 cut(s) 912
BtsCI GGATG 2 cut(s) 45, 331
BtsIMutI CAGTG 1 cut(s) 927
Cac8I GCNNGC 3 cut(s) 56, 838, 1044
CaiI CAGNNNCTG 1 cut(s) 179
CfoI GCGC 1 cut(s) 54
Cfr10I RCCGGY 1 cut(s) 54
CspCI CAANNNNNGTGG 2 cut(s) 1077, 1112
CviAII CATG 5 cut(s) 407, 815, 868, 881, 913
DdeI CTNAG 5 cut(s) 13, 480, 786, 823, 967
DpnI GATC 6 cut(s) 96, 156, 321, 330, 875, 1160
DpnII GATC 6 cut(s) 94, 154, 319, 328, 873, 1158
EaeI YGGCCR 1 cut(s) 1098
Eam1104I CTCTTC 2 cut(s) 758, 1008
EarI CTCTTC 2 cut(s) 758, 1008
EciI GGCGGA 1 cut(s) 1171
Eco130I CCWWGG 1 cut(s) 912
Eco24I GRGCYC 2 cut(s) 253, 630
Eco57I CTGAAG 1 cut(s) 156
EcoRII CCWGG 2 cut(s) 187, 1179
EcoT14I CCWWGG 1 cut(s) 912
EcoT22I ATGCAT 1 cut(s) 390
EcoT38I GRGCYC 2 cut(s) 253, 630
ErhI CCWWGG 1 cut(s) 912
FaeI CATG 5 cut(s) 410, 818, 871, 884, 916
FatI CATG 5 cut(s) 406, 814, 867, 880, 912
FbaI TGATCA 1 cut(s) 319
Fnu4HI GCNGC 4 cut(s) 804, 981, 1040, 1248
FokI GGATG 2 cut(s) 32, 318
FriOI GRGCYC 2 cut(s) 253, 630
Fsp4HI GCNGC 4 cut(s) 804, 981, 1040, 1248
FspBI CTAG 2 cut(s) 612, 1251
GlaI GCGC 1 cut(s) 53
GluI GCNGC 4 cut(s) 804, 981, 1040, 1248
GsuI CTGGAG 1 cut(s) 121
HaeIII GGCC 2 cut(s) 1100, 1184
HapII CCGG 4 cut(s) 55, 227, 254, 377
HhaI GCGC 1 cut(s) 54
Hin1II CATG 5 cut(s) 410, 818, 871, 884, 916
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HindIII AAGCTT 1 cut(s) 885
HinfI GANTC 5 cut(s) 107, 192, 218, 311, 1085
HpaII CCGG 4 cut(s) 55, 227, 254, 377
HphI GGTGA 4 cut(s) 452, 481, 553, 933
Hpy166II GTNNAC 1 cut(s) 1236
Hpy188I TCNGA 6 cut(s) 24, 94, 396, 481, 826, 970
Hpy188III TCNNGA 8 cut(s) 104, 138, 246, 368, 377, 760, 854, 897
Hpy8I GTNNAC 1 cut(s) 1236
HpyCH4III ACNGT 3 cut(s) 583, 931, 939
HpyCH4V TGCA 8 cut(s) 66, 290, 388, 647, 710, 836, 1177, 1242
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 72
HpyF3I CTNAG 5 cut(s) 13, 480, 786, 823, 967
Hsp92II CATG 5 cut(s) 410, 818, 871, 884, 916
HspAI GCGC 1 cut(s) 52
Kpn2I TCCGGA 1 cut(s) 376
KroI GCCGGC 1 cut(s) 54
KroNI GCCGGC 1 cut(s) 56
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 6 cut(s) 94, 154, 319, 328, 873, 1158
LmnI GCTCC 2 cut(s) 824, 955
Lsp1109I GCAGC 4 cut(s) 790, 992, 1026, 1234
LweI GCATC 4 cut(s) 54, 346, 397, 823
MaeI CTAG 2 cut(s) 612, 1251
MaeIII GTNAC 5 cut(s) 8, 181, 662, 939, 959
MalI GATC 6 cut(s) 96, 156, 321, 330, 875, 1160
MbiI CCGCTC 1 cut(s) 699
MboI GATC 6 cut(s) 94, 154, 319, 328, 873, 1158
MflI RGATCY 1 cut(s) 1158
MhlI GDGCHC 2 cut(s) 253, 630
MlsI TGGCCA 1 cut(s) 1100
MluNI TGGCCA 1 cut(s) 1100
MlyI GAGTC 2 cut(s) 212, 305
MmeI TCCRAC 1 cut(s) 104
Mox20I TGGCCA 1 cut(s) 1100
Mph1103I ATGCAT 1 cut(s) 390
MroI TCCGGA 1 cut(s) 376
MroNI GCCGGC 1 cut(s) 54
MscI TGGCCA 1 cut(s) 1100
MseI TTAA 2 cut(s) 617, 1008
MslI CAYNNNNRTG 1 cut(s) 777
Msp20I TGGCCA 1 cut(s) 1100
MspI CCGG 4 cut(s) 55, 227, 254, 377
MspR9I CCNGG 3 cut(s) 189, 254, 1181
MvaI CCWGG 2 cut(s) 189, 1181
MwoI GCNNNNNNNGC 2 cut(s) 51, 72
NaeI GCCGGC 1 cut(s) 56
NciI CCSGG 1 cut(s) 254
NcoI CCATGG 1 cut(s) 912
NdeII GATC 6 cut(s) 94, 154, 319, 328, 873, 1158
NgoMIV GCCGGC 1 cut(s) 54
NlaIII CATG 5 cut(s) 410, 818, 871, 884, 916
NlaIV GGNNCC 3 cut(s) 750, 820, 1160
NmuCI GTSAC 3 cut(s) 181, 939, 959
NsiI ATGCAT 1 cut(s) 390
NspI RCATGY 1 cut(s) 871
NspV TTCGAA 2 cut(s) 349, 1119
PciI ACATGT 1 cut(s) 867
PcsI WCGNNNNNNNCGW 2 cut(s) 346, 1125
PdiI GCCGGC 1 cut(s) 56
PfeI GAWTC 3 cut(s) 107, 192, 1085
PkrI GCNGC 4 cut(s) 805, 982, 1041, 1249
PleI GAGTC 2 cut(s) 212, 305
PpsI GAGTC 2 cut(s) 212, 305
PscI ACATGT 1 cut(s) 867
Psp6I CCWGG 2 cut(s) 187, 1179
PspGI CCWGG 2 cut(s) 187, 1179
PspN4I GGNNCC 3 cut(s) 750, 820, 1160
PstNI CAGNNNCTG 1 cut(s) 179
PsuI RGATCY 1 cut(s) 1158
RseI CAYNNNNRTG 1 cut(s) 777
SaqAI TTAA 2 cut(s) 617, 1008
SatI GCNGC 4 cut(s) 804, 981, 1040, 1248
Sau3AI GATC 6 cut(s) 94, 154, 319, 328, 873, 1158
SchI GAGTC 2 cut(s) 212, 305
ScrFI CCNGG 3 cut(s) 189, 254, 1181
SduI GDGCHC 2 cut(s) 253, 630
SfaNI GCATC 4 cut(s) 54, 346, 397, 823
SfuI TTCGAA 2 cut(s) 349, 1119
SmiMI CAYNNNNRTG 1 cut(s) 777
SsiI CCGC 3 cut(s) 335, 699, 1156
SspMI CTAG 2 cut(s) 612, 1251
StyD4I CCNGG 3 cut(s) 187, 252, 1179
StyI CCWWGG 1 cut(s) 912
TaaI ACNGT 3 cut(s) 583, 931, 939
TaqI TCGA 8 cut(s) 268, 314, 349, 449, 464, 876, 1119, 1128
TfiI GAWTC 3 cut(s) 107, 192, 1085
Tru1I TTAA 2 cut(s) 617, 1008
Tru9I TTAA 2 cut(s) 617, 1008
TscAI CASTG 1 cut(s) 934
TseFI GTSAC 3 cut(s) 181, 939, 959
TseI GCWGC 4 cut(s) 803, 980, 1039, 1247
Tsp45I GTSAC 3 cut(s) 181, 939, 959
TspDTI ATGAA 7 cut(s) 575, 795, 803, 897, 1146, 1206, 1227
TspGWI ACGGA 1 cut(s) 1082
TspRI CASTG 1 cut(s) 934
XapI RAATTY 6 cut(s) 99, 162, 682, 809, 1145, 1193
XceI RCATGY 1 cut(s) 871
XspI CTAG 2 cut(s) 612, 1251
Zsp2I ATGCAT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.