Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0007838

Physical Location & Seq

Genomic Coordinates Forward (+)

17835588 .. 17836115

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g15030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGGGTCCTCTAACAGCTATGTTGTTCCATGGGCACAAGCACAACCTCAATCTCAACTCCAGCAGCCACAGTTCCAACCTCATTCACAATTTCAACCTCAGCCTCAATTCCAGTCACAATTTCAACCTCAATATCCTCAATACACGTCTGCCTACCCTCCCCCACCATGGGCAGCTTCACCGGGATATTCTAACCAAAATCATTTTTCCACCAATAATACATCGACTCCTCGTGCCAACGCCACCACATCTTATACGCCAGCACAATCAGCTAGACCTTTGCAGCACTTCAATTCGTTCCCTACAAGGGGAATGAATGGGATAGATACCAACGGAGGTTCAGTGAGCCCTGGTCCTAGGAGCCCTGCCCCTGCAGCAGGACAAAAGCCCTACATTCCCTCGTACCGATTATTTGAAGATCTGAATGTGTTTGGCAATGCAGATGGAAAGTTCAAGATGACAAACAGCAATGCATCATCTAGCTTGTCAGGAGCTGCCGGCCAAGGTATGGTAGGTGGGAGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0007088 GO:0007154 GO:0007165 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016197 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0023052 GO:0030163 GO:0030276 GO:0031410 GO:0031982 GO:0032182 GO:0032509 GO:0032511 GO:0033036 GO:0033043 GO:0033365 GO:0034613 GO:0042886 GO:0043130 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0045786 GO:0045839 GO:0045930 GO:0046907 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0065007 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAT VHS

Protein Analysis

176

Amino Acids

18.86

Weight (kDa)

9.85

Isoelectric Point (pI)

49.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38410
fragaria_vesca	FvH4_6g10390 FvH4_6g10390 FvH4_6g10390 FvH4_6g10390 FvH4_6g10390
malus_domestica	MD04G1169500.v1.1 MD12G1183500.v1.1
prunus_persica	Prupe.6G288000_v2.0.a1 Prupe.6G288000_v2.0.a1
pyrus_communis	pycom04g15020 pycom04g15030 pycom12g17210
rosa_chinensis	RchiOBHm_Chr3g0461281
rosa_laevigata	RLG00000024944
rosa_multiflora	Rmu_ssc0000326.1_g000008
rosa_roxburghii	Rroxscaffold_6G00418440 Rroxscaffold_6G00418730
rosa_rugosa	Rorug03G0049400
rosa_samantha	Rh3AG106700 Rh3BG110900 Rh3CG112800 Rh3DG112900
rosa_wichuraiana	Rw3G009140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	508
AcoI	YGGCCR	1 cut(s)	499
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	6 cut(s)	168, 169, 307, 308, 377, 508
AflIII	ACRYGT	1 cut(s)	144
AgsI	TTSAA	5 cut(s)	95, 125, 292, 416, 454
AjiI	CACGTC	1 cut(s)	147
AjnI	CCWGG	1 cut(s)	349
AluBI	AGCT	5 cut(s)	18, 176, 272, 483, 494
AluI	AGCT	5 cut(s)	18, 176, 272, 483, 494
AlwNI	CAGNNNCTG	1 cut(s)	494
AoxI	GGCC	1 cut(s)	499
ApeKI	GCWGC	5 cut(s)	64, 173, 283, 374, 494
AspA2I	CCTAGG	1 cut(s)	356
AspS9I	GGNCC	2 cut(s)	6, 353
AsuC2I	CCSGG	1 cut(s)	183
AsuHPI	GGTGA	1 cut(s)	171
AvaII	GGWCC	2 cut(s)	6, 353
AvrII	CCTAGG	1 cut(s)	356
BaeGI	GKGCMC	1 cut(s)	37
BanII	GRGCYC	2 cut(s)	350, 365
BauI	CACGAG	1 cut(s)	231
BbvCI	CCTCAGC	1 cut(s)	99
BbvI	GCAGC	5 cut(s)	76, 185, 295, 386, 481
BccI	CCATC	1 cut(s)	437
BciT130I	CCWGG	1 cut(s)	351
BcnI	CCSGG	1 cut(s)	183
BfaI	CTAG	3 cut(s)	273, 357, 480
BfmI	CTRYAG	1 cut(s)	372
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	5 cut(s)	65, 174, 284, 375, 495
BlnI	CCTAGG	1 cut(s)	356
BlsI	GCNGC	5 cut(s)	66, 175, 285, 376, 496
Bme1390I	CCNGG	2 cut(s)	183, 351
Bme18I	GGWCC	2 cut(s)	6, 353
BmgBI	CACGTC	1 cut(s)	147
BmgT120I	GGNCC	2 cut(s)	6, 353
BmiI	GGNNCC	2 cut(s)	7, 362
BmrFI	CCNGG	2 cut(s)	183, 351
BmsI	GCATC	1 cut(s)	482
BpmI	CTGGAG	1 cut(s)	44
Bpu10I	CCTNAGC	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	183
BsaJI	CCNNGG	5 cut(s)	29, 167, 349, 356, 502
BsaXI	ACNNNNNCTCC	4 cut(s)	211, 241, 327, 357
Bsc4I	CCNNNNNNNGG	6 cut(s)	168, 169, 307, 308, 377, 508
Bse118I	RCCGGY	1 cut(s)	497
Bse1I	ACTGG	1 cut(s)	112
Bse3DI	GCAATG	2 cut(s)	442, 475
BseBI	CCWGG	1 cut(s)	351
BseDI	CCNNGG	5 cut(s)	29, 167, 349, 356, 502
BseLI	CCNNNNNNNGG	6 cut(s)	168, 169, 307, 308, 377, 508
BseMI	GCAATG	2 cut(s)	442, 475
BseMII	CTCAG	1 cut(s)	113
BseNI	ACTGG	1 cut(s)	112
BseRI	GAGGAG	1 cut(s)	219
BseSI	GKGCMC	1 cut(s)	37
BseXI	GCAGC	5 cut(s)	76, 185, 295, 386, 481
BshFI	GGCC	1 cut(s)	501
BsiSI	CCGG	2 cut(s)	182, 498
BslI	CCNNNNNNNGG	6 cut(s)	168, 169, 307, 308, 377, 508
BsnI	GGCC	1 cut(s)	501
Bsp1286I	GDGCHC	3 cut(s)	37, 350, 365
Bsp143I	GATC	1 cut(s)	418
Bsp19I	CCATGG	2 cut(s)	29, 167
BspANI	GGCC	1 cut(s)	501
BspCNI	CTCAG	1 cut(s)	112
BspLI	GGNNCC	2 cut(s)	7, 362
BspMAI	CTGCAG	1 cut(s)	376
BsrDI	GCAATG	2 cut(s)	442, 475
BsrFI	RCCGGY	1 cut(s)	497
BsrI	ACTGG	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	497
BssECI	CCNNGG	5 cut(s)	29, 167, 349, 356, 502
BssMI	GATC	1 cut(s)	418
BssSI	CACGAG	1 cut(s)	231
BssT1I	CCWWGG	4 cut(s)	29, 167, 356, 502
Bst2BI	CACGAG	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	1 cut(s)	72
BstC8I	GCNNGC	2 cut(s)	261, 499
BstDEI	CTNAG	1 cut(s)	99
BstDSI	CCRYGG	2 cut(s)	29, 167
BstENI	CCTNNNNNAGG	1 cut(s)	375
BstKTI	GATC	1 cut(s)	421
BstMBI	GATC	1 cut(s)	418
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 374
BstNI	CCWGG	1 cut(s)	351
BstSCI	CCNGG	2 cut(s)	181, 349
BstSFI	CTRYAG	1 cut(s)	372
BstSLI	GKGCMC	1 cut(s)	37
BstV1I	GCAGC	5 cut(s)	76, 185, 295, 386, 481
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BsuRI	GGCC	1 cut(s)	501
BtgI	CCRYGG	2 cut(s)	29, 167
BtrI	CACGTC	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	2 cut(s)	261, 499
CaiI	CAGNNNCTG	1 cut(s)	494
Cfr10I	RCCGGY	1 cut(s)	497
Cfr13I	GGNCC	2 cut(s)	6, 353
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	2 cut(s)	30, 168
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	1 cut(s)	420
DpnII	GATC	1 cut(s)	418
EaeI	YGGCCR	1 cut(s)	499
Eco130I	CCWWGG	4 cut(s)	29, 167, 356, 502
Eco24I	GRGCYC	2 cut(s)	350, 365
Eco47I	GGWCC	2 cut(s)	6, 353
EcoNI	CCTNNNNNAGG	1 cut(s)	375
EcoO109I	RGGNCCY	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	349
EcoT14I	CCWWGG	4 cut(s)	29, 167, 356, 502
EcoT22I	ATGCAT	1 cut(s)	475
EcoT38I	GRGCYC	2 cut(s)	350, 365
ErhI	CCWWGG	4 cut(s)	29, 167, 356, 502
FaeI	CATG	2 cut(s)	33, 171
FaiI	YATR	5 cut(s)	21, 31, 169, 255, 509
FatI	CATG	2 cut(s)	29, 167
Fnu4HI	GCNGC	5 cut(s)	65, 174, 284, 375, 495
FriOI	GRGCYC	2 cut(s)	350, 365
Fsp4HI	GCNGC	5 cut(s)	65, 174, 284, 375, 495
FspBI	CTAG	3 cut(s)	273, 357, 480
GluI	GCNGC	5 cut(s)	65, 174, 284, 375, 495
GsuI	CTGGAG	1 cut(s)	44
HaeIII	GGCC	1 cut(s)	501
HapII	CCGG	2 cut(s)	182, 498
Hin1II	CATG	2 cut(s)	33, 171
HinfI	GANTC	1 cut(s)	226
HpaII	CCGG	2 cut(s)	182, 498
HphI	GGTGA	1 cut(s)	171
Hpy188I	TCNGA	1 cut(s)	423
Hpy188III	TCNNGA	2 cut(s)	454, 489
HpyCH4III	ACNGT	1 cut(s)	72
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	4 cut(s)	283, 374, 440, 473
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 374
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	146
Hsp92II	CATG	2 cut(s)	33, 171
KroI	GCCGGC	1 cut(s)	497
KroNI	GCCGGC	1 cut(s)	499
Kzo9I	GATC	1 cut(s)	418
LmnI	GCTCC	2 cut(s)	360, 491
Lsp1109I	GCAGC	5 cut(s)	76, 185, 295, 386, 481
LweI	GCATC	1 cut(s)	482
MaeI	CTAG	3 cut(s)	273, 357, 480
MaeII	ACGT	1 cut(s)	146
MaeIII	GTNAC	1 cut(s)	114
MalI	GATC	1 cut(s)	420
MboI	GATC	1 cut(s)	418
MboII	GAAGA	1 cut(s)	428
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	3 cut(s)	37, 350, 365
MluCI	AATT	4 cut(s)	89, 107, 119, 292
MlyI	GAGTC	1 cut(s)	220
MmeI	TCCRAC	1 cut(s)	100
Mph1103I	ATGCAT	1 cut(s)	475
MroNI	GCCGGC	1 cut(s)	497
MspI	CCGG	2 cut(s)	182, 498
MspR9I	CCNGG	2 cut(s)	183, 351
MvaI	CCWGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	2 cut(s)	269, 374
NaeI	GCCGGC	1 cut(s)	499
NciI	CCSGG	1 cut(s)	183
NcoI	CCATGG	2 cut(s)	29, 167
NdeII	GATC	1 cut(s)	418
NgoMIV	GCCGGC	1 cut(s)	497
NlaIII	CATG	2 cut(s)	33, 171
NlaIV	GGNNCC	2 cut(s)	7, 362
NmuCI	GTSAC	1 cut(s)	114
NsiI	ATGCAT	1 cut(s)	475
PdiI	GCCGGC	1 cut(s)	499
PflMI	CCANNNNNTGG	1 cut(s)	508
PkrI	GCNGC	5 cut(s)	66, 175, 285, 376, 496
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
PpuMI	RGGWCCY	1 cut(s)	6
Psp5II	RGGWCCY	1 cut(s)	6
Psp6I	CCWGG	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	2 cut(s)	7, 362
PspPI	GGNCC	2 cut(s)	6, 353
PspPPI	RGGWCCY	1 cut(s)	6
PstI	CTGCAG	1 cut(s)	376
PstNI	CAGNNNCTG	1 cut(s)	494
PsuI	RGATCY	1 cut(s)	418
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SatI	GCNGC	5 cut(s)	65, 174, 284, 375, 495
Sau3AI	GATC	1 cut(s)	418
Sau96I	GGNCC	2 cut(s)	6, 353
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	2 cut(s)	183, 351
SduI	GDGCHC	3 cut(s)	37, 350, 365
SfaNI	GCATC	1 cut(s)	482
SfcI	CTRYAG	1 cut(s)	372
SinI	GGWCC	2 cut(s)	6, 353
Sse9I	AATT	4 cut(s)	89, 107, 119, 292
SspMI	CTAG	3 cut(s)	273, 357, 480
StyD4I	CCNGG	2 cut(s)	181, 349
StyI	CCWWGG	4 cut(s)	29, 167, 356, 502
TaaI	ACNGT	1 cut(s)	72
TaiI	ACGT	1 cut(s)	149
TaqI	TCGA	1 cut(s)	224
TasI	AATT	4 cut(s)	89, 107, 119, 292
TscAI	CASTG	1 cut(s)	348
TseFI	GTSAC	1 cut(s)	114
TseI	GCWGC	5 cut(s)	64, 173, 283, 374, 494
Tsp45I	GTSAC	1 cut(s)	114
TspDTI	ATGAA	1 cut(s)	329
TspGWI	ACGGA	1 cut(s)	348
TspRI	CASTG	1 cut(s)	348
Van91I	CCANNNNNTGG	1 cut(s)	508
VpaK11BI	GGWCC	2 cut(s)	6, 353
XagI	CCTNNNNNAGG	1 cut(s)	375
XmaJI	CCTAGG	1 cut(s)	356
XspI	CTAG	3 cut(s)	273, 357, 480
Zsp2I	ATGCAT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.