Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007838

Physical Location & Seq

Genomic Coordinates Reverse (-)

40321427 .. 40326081

Gene Structure 4655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00418730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1941 bp

ATGATAGTGGCCACGTCAGCGTCGTCGTCGTCGTCTTCGGCCAGTGTGGCGGTGGACAAGGCGACTAGCGATCTTCTGATAAACCCTGATTGGACGATGAACATCGATATCTGTGATTCCGTCAATTCTCATCAGTGGCAGGCAAAAGATGTCGTAAAAGCTGTAAAAAGAAGGTTGCAGCATAAGAACCCCAAAGTTCAGTTCCTTGCTTTGACGCTATTGGAGACTATGGTGAAGAATTGTGGTGATTATATCCATTTTCAAATTGCAGAGAGGAATATATTGGGAGAGATGATAAAAATTGTGAGGAAGAAGTCAGATATGCAGGTAAGGGATAAGATTTTGATATTGGTGGACTCTTGGCAAGCAGCTTTTGGTGGGCCTTCAGGAAAGCATCCTCAGTACTATTGGGCATATGATGAGCTAAGGCGGTCTGGAGTAGAGTTTCCTAAGCATTCCTTAGATGCAGCTCCAATGTTTGCACCTCCTGTTGCAAATTCAGTACCAAGACCTTCTCAAGCTGGATATGGAATGCCTAGCAATTCCTCAAGGCGGCTTGATGAGACAATGGCTACAGAAAACGAAAATTTAACTTTGACAAGCCTGGATTCTATGAGGGATGTTATGGAGCTCTTGAGTGACATGCTGCAAGCTGTGAACCCTAATGACCGATTGGGTGTAAAAGATGAAGTCATAGTTGAACTTGTCAACCAGTGTCGTGCCAACCAGAAAAAGCTGATTCATATGCTAACTACAACCGGAGATGAAGAACTTCTTGGACGGGGTCTCGAATTAAACGACAGTCTGCAAAGTTTGCTTGCAAAGCATGATGCTATAGCTTCTGGTTTACCTTTGCCAACTGCAAACTTTAGTCCTCAACCAGCTGAAATGCCCGCATCCAGTTCCAAGCATACTGAAGCAAAAGGCTCCAGCACAAGTGACTCCAGTCCAAGACCTAAAGCTAGTCCCTCTGCACCAGTTGTTACCACATCAAGGGTCCAAATTGATGAAGATGAAGAAGAGGAAGATGAATTTGCACAGCTAGCTCGAAGGCATTCCAAACAAAGTTCCTCCAAGCCTACTGAAAGCACACCTAATGGTACCAGTGAAGGTTTGGCATTGGTAAGCGTAGATCCGTCTCCGTCTGCATCAGTGGCAACATCTGTCCCAAACAACGCGTTAGTTCTGTCTGATCCACCTGCTTCAAGTAAGACTACGCAAGAGCAGAACATAATTGACCTACTGAGCATCACTTTGTCGACAACAGCAATCTCCAGTGACACCTCTCCTCCTCCTCCAACATCTGTCCCTCCCCCACTTCCGGCATCTAACGGTAATGTTCATCAGATACCTGCTTCCCCCGCTATACAAGGCAATCCCTATCCTTCCCAAGCTTATCCTGGAAATCCTGGGCTTGGATCCTACAACAGCTATGTTGTTCCTTGGGCACAACCTCAGGCCCAACAACCTCAATTCAGGCCGCAATTACAGCCACAGCAACAGCAGCAACCTCAATTCCAGTCGCAGTTTCAACATCAATATCCCCAATATTCTTCTGCCTACCCTCCTCCACCATGGGCATCTTCTCCTGGTTATCCCAACAACCAAAATCATGTGTCCGCCAATAGTACGTATGCGACTCCTCACACCAACACAACAGCTTACATGCCAGTGCAAGGAGCAAGGCCTTTGCAGCAGTATAATTCGTTCCCCGCGAGAGGAACCACTGGGTCAGATAACAATGGAGGTTTCCCAACAAATCCTGGTCCTAGGAGCCCTGGACCTGCTGCAGGACAAAAGCCCTTCATTCCCTCGTACCGATTATTTGAAGATCTGAATGTTTTTGGCAATGCTGATGGAAAGCTTAAGGTGGCGAACGGCAACCCATCATCTGGCTTCTCTGGAACTCCAGGCCAAGGTATGGTGGGTGGGAGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0007088 GO:0007154 GO:0007165 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016197 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0023052 GO:0030163 GO:0030276 GO:0031410 GO:0031982 GO:0032182 GO:0032509 GO:0032511 GO:0033036 GO:0033043 GO:0033365 GO:0034613 GO:0042886 GO:0043130 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0045786 GO:0045839 GO:0045930 GO:0046907 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0065007 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAT VHS

Protein Analysis

646

Amino Acids

69.58

Weight (kDa)

6.03

Isoelectric Point (pI)

56.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VHS	PF00790	10 - 130	6.9e-33	VHS domain
GAT	PF03127	208 - 282	8.7e-19	GAT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38410
fragaria_vesca	FvH4_6g10390 FvH4_6g10390 FvH4_6g10390 FvH4_6g10390 FvH4_6g10390
malus_domestica	MD04G1169500.v1.1 MD12G1183500.v1.1
prunus_persica	Prupe.6G288000_v2.0.a1 Prupe.6G288000_v2.0.a1
pyrus_communis	pycom04g15020 pycom04g15030 pycom12g17210
rosa_chinensis	RchiOBHm_Chr3g0461281
rosa_laevigata	RLG00000024944
rosa_multiflora	Rmu_ssc0000326.1_g000008
rosa_roxburghii	Rroxscaffold_6G00418440 Rroxscaffold_6G00418730
rosa_rugosa	Rorug03G0049400
rosa_samantha	Rh3AG106700 Rh3BG110900 Rh3CG112800 Rh3DG112900
rosa_wichuraiana	Rw3G009140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1207
Acc36I	ACCTGC	4 cut(s)	316, 1207, 1360, 1792
Acc65I	GGTACC	1 cut(s)	1100
AccB1I	GGYRCC	1 cut(s)	1100
AccB7I	CCANNNNNTGG	2 cut(s)	1892, 1921
AccI	GTMKAC	1 cut(s)	1259
AccII	CGCG	2 cut(s)	1178, 1715
AciI	CCGC	8 cut(s)	50, 430, 553, 894, 1362, 1481, 1620, 1713
AclWI	GGATC	4 cut(s)	1127, 1187, 1413, 1426
AcoI	YGGCCR	2 cut(s)	9, 39
AcsI	RAATTY	3 cut(s)	496, 586, 1031
AcuI	CTGAAG	2 cut(s)	369, 936
AfaI	GTAC	5 cut(s)	404, 504, 1102, 1630, 1817
AflII	CTTAAG	1 cut(s)	1865
AflIII	ACRYGT	1 cut(s)	1176
AgsI	TTSAA	5 cut(s)	263, 701, 1206, 1532, 1829
AjiI	CACGTC	1 cut(s)	15
AjnI	CCWGG	7 cut(s)	603, 1399, 1408, 1588, 1762, 1777, 1909
AjuI	GAANNNNNNNTTGG	4 cut(s)	185, 217, 759, 791
Alw21I	GWGCWC	1 cut(s)	633
Alw26I	GTCTC	4 cut(s)	218, 557, 791, 1143
AlwI	GGATC	4 cut(s)	1127, 1187, 1413, 1426
AoxI	GGCC	7 cut(s)	9, 39, 380, 1458, 1478, 1685, 1912
ApeKI	GCWGC	7 cut(s)	178, 368, 467, 646, 1504, 1693, 1787
ApoI	RAATTY	3 cut(s)	496, 586, 1031
Asp700I	GAANNNNTTC	2 cut(s)	771, 1054
Asp718I	GGTACC	1 cut(s)	1100
AspA2I	CCTAGG	1 cut(s)	1769
AspS9I	GGNCC	5 cut(s)	380, 997, 1459, 1766, 1781
AsuHPI	GGTGA	2 cut(s)	244, 257
AsuNHI	GCTAGC	1 cut(s)	1042
AvaII	GGWCC	3 cut(s)	997, 1766, 1781
AvrII	CCTAGG	1 cut(s)	1769
AxyI	CCTNAGG	1 cut(s)	1455
BaeGI	GKGCMC	1 cut(s)	1450
BalI	TGGCCA	1 cut(s)	11
BamHI	GGATCC	1 cut(s)	1418
BanI	GGYRCC	1 cut(s)	1100
BanII	GRGCYC	2 cut(s)	633, 1778
BbsI	GAAGAC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	633
BbvI	GCAGC	7 cut(s)	190, 380, 479, 633, 1516, 1705, 1774
BccI	CCATC	2 cut(s)	1850, 1894
BceAI	ACGGC	1 cut(s)	1894
BciT130I	CCWGG	7 cut(s)	605, 1401, 1410, 1590, 1764, 1779, 1911
BcoDI	GTCTC	4 cut(s)	218, 557, 791, 1143
BfaI	CTAG	5 cut(s)	66, 537, 963, 1043, 1770
BfmI	CTRYAG	3 cut(s)	573, 834, 1788
BfrI	CTTAAG	1 cut(s)	1865
BfuAI	ACCTGC	4 cut(s)	316, 1207, 1360, 1792
BglI	GCCNNNNNGGC	1 cut(s)	47
BglII	AGATCT	1 cut(s)	1831
BisI	GCNGC	9 cut(s)	179, 369, 468, 554, 647, 1481, 1505, 1694, 1788
BlnI	CCTAGG	1 cut(s)	1769
BlsI	GCNGC	9 cut(s)	180, 370, 469, 555, 648, 1482, 1506, 1695, 1789
BmcAI	AGTACT	1 cut(s)	404
Bme1390I	CCNGG	7 cut(s)	605, 1401, 1410, 1590, 1764, 1779, 1911
Bme18I	GGWCC	3 cut(s)	997, 1766, 1781
BmgBI	CACGTC	1 cut(s)	15
BmgT120I	GGNCC	5 cut(s)	380, 997, 1459, 1766, 1781
BmiI	GGNNCC	6 cut(s)	928, 998, 1102, 1420, 1723, 1775
BmrFI	CCNGG	7 cut(s)	605, 1401, 1410, 1590, 1764, 1779, 1911
BmrI	ACTGGG	1 cut(s)	1737
BmsI	GCATC	8 cut(s)	403, 454, 820, 905, 1157, 1257, 1334, 1589
BmtI	GCTAGC	1 cut(s)	1046
BmuI	ACTGGG	1 cut(s)	1737
BoxI	GACNNNNGTC	1 cut(s)	945
BpiI	GAAGAC	1 cut(s)	27
BpmI	CTGGAG	5 cut(s)	456, 913, 928, 1258, 1893
Bpu10I	CCTNAGC	2 cut(s)	425, 450
BpuEI	CTTGAG	3 cut(s)	501, 532, 655
Bsa29I	ATCGAT	1 cut(s)	105
BsaAI	YACGTR	1 cut(s)	1632
BsaBI	GATNNNNATC	1 cut(s)	101
BsaI	GGTCTC	1 cut(s)	791
BsaJI	CCNNGG	6 cut(s)	1409, 1442, 1574, 1769, 1777, 1915
BsaWI	WCCGGW	1 cut(s)	758
BsaXI	ACNNNNNCTCC	2 cut(s)	1273, 1303
Bse21I	CCTNAGG	1 cut(s)	1455
Bse3DI	GCAATG	1 cut(s)	1855
Bse8I	GATNNNNATC	1 cut(s)	101
BseBI	CCWGG	7 cut(s)	605, 1401, 1410, 1590, 1764, 1779, 1911
BseCI	ATCGAT	1 cut(s)	105
BseDI	CCNNGG	6 cut(s)	1409, 1442, 1574, 1769, 1777, 1915
BseGI	GGATG	3 cut(s)	394, 625, 896
BseJI	GATNNNNATC	1 cut(s)	101
BseMI	GCAATG	1 cut(s)	1855
BseMII	CTCAG	3 cut(s)	413, 1235, 1469
BseRI	GAGGAG	5 cut(s)	1278, 1281, 1284, 1557, 1632
BseSI	GKGCMC	1 cut(s)	1450
BseXI	GCAGC	7 cut(s)	190, 380, 479, 633, 1516, 1705, 1774
BsgI	GTGCAG	1 cut(s)	957
Bsh1236I	CGCG	2 cut(s)	1178, 1715
BshFI	GGCC	7 cut(s)	11, 41, 382, 1460, 1480, 1687, 1914
BshNI	GGYRCC	1 cut(s)	1100
BshVI	ATCGAT	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	633
BsiSI	CCGG	2 cut(s)	759, 1322
BslFI	GGGAC	3 cut(s)	951, 1151, 1292
BsmAI	GTCTC	4 cut(s)	218, 557, 791, 1143
BsmBI	CGTCTC	1 cut(s)	1143
BsmFI	GGGAC	3 cut(s)	951, 1151, 1292
BsmI	GAATGC	3 cut(s)	454, 537, 1054
BsnI	GGCC	7 cut(s)	11, 41, 382, 1460, 1480, 1687, 1914
Bso31I	GGTCTC	1 cut(s)	791
Bsp1286I	GDGCHC	3 cut(s)	633, 1450, 1778
Bsp143I	GATC	5 cut(s)	70, 1132, 1192, 1418, 1831
Bsp19I	CCATGG	1 cut(s)	1574
BspACI	CCGC	8 cut(s)	50, 430, 553, 894, 1362, 1481, 1620, 1713
BspANI	GGCC	7 cut(s)	11, 41, 382, 1460, 1480, 1687, 1914
BspCNI	CTCAG	3 cut(s)	412, 1236, 1468
BspDI	ATCGAT	1 cut(s)	105
BspFNI	CGCG	2 cut(s)	1178, 1715
BspLI	GGNNCC	6 cut(s)	928, 998, 1102, 1420, 1723, 1775
BspMAI	CTGCAG	1 cut(s)	1792
BspMI	ACCTGC	4 cut(s)	316, 1207, 1360, 1792
BspOI	GCTAGC	1 cut(s)	1046
BspPI	GGATC	4 cut(s)	1127, 1187, 1413, 1426
BspT107I	GGYRCC	1 cut(s)	1100
BspTI	CTTAAG	1 cut(s)	1865
BspTNI	GGTCTC	1 cut(s)	791
BsrDI	GCAATG	1 cut(s)	1855
BssECI	CCNNGG	6 cut(s)	1409, 1442, 1574, 1769, 1777, 1915
BssMI	GATC	5 cut(s)	70, 1132, 1192, 1418, 1831
BssT1I	CCWWGG	4 cut(s)	1442, 1574, 1769, 1915
Bst2UI	CCWGG	7 cut(s)	605, 1401, 1410, 1590, 1764, 1779, 1911
Bst4CI	ACNGT	2 cut(s)	803, 1334
Bst6I	CTCTTC	1 cut(s)	1014
BstAFI	CTTAAG	1 cut(s)	1865
BstAPI	GCANNNNNTGC	1 cut(s)	814
BstBAI	YACGTR	1 cut(s)	1632
BstC8I	GCNNGC	6 cut(s)	141, 366, 651, 819, 894, 1044
BstDEI	CTNAG	6 cut(s)	399, 425, 450, 460, 1244, 1455
BstDSI	CCRYGG	1 cut(s)	1574
BstENI	CCTNNNNNAGG	1 cut(s)	1788
BstF5I	GGATG	3 cut(s)	394, 625, 896
BstFNI	CGCG	2 cut(s)	1178, 1715
BstKTI	GATC	5 cut(s)	73, 1135, 1195, 1421, 1834
BstMAI	GTCTC	4 cut(s)	218, 557, 791, 1143
BstMBI	GATC	5 cut(s)	70, 1132, 1192, 1418, 1831
BstNI	CCWGG	7 cut(s)	605, 1401, 1410, 1590, 1764, 1779, 1911
BstNSI	RCATGY	2 cut(s)	646, 1669
BstPAI	GACNNNNGTC	1 cut(s)	945
BstSCI	CCNGG	7 cut(s)	603, 1399, 1408, 1588, 1762, 1777, 1909
BstSFI	CTRYAG	3 cut(s)	573, 834, 1788
BstSLI	GKGCMC	1 cut(s)	1450
BstSNI	TACGTA	1 cut(s)	1632
BstUI	CGCG	2 cut(s)	1178, 1715
BstV1I	GCAGC	7 cut(s)	190, 380, 479, 633, 1516, 1705, 1774
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	3 cut(s)	1132, 1418, 1831
BstYI	RGATCY	3 cut(s)	1132, 1418, 1831
Bsu15I	ATCGAT	1 cut(s)	105
Bsu36I	CCTNAGG	1 cut(s)	1455
BsuRI	GGCC	7 cut(s)	11, 41, 382, 1460, 1480, 1687, 1914
BsuTUI	ATCGAT	1 cut(s)	105
BtgI	CCRYGG	1 cut(s)	1574
BtrI	CACGTC	1 cut(s)	15
BtsCI	GGATG	3 cut(s)	394, 625, 896
BtsIMutI	CAGTG	8 cut(s)	49, 140, 719, 1111, 1158, 1282, 1677, 1725
BveI	ACCTGC	4 cut(s)	316, 1207, 1360, 1792
Cac8I	GCNNGC	6 cut(s)	141, 366, 651, 819, 894, 1044
Cfr13I	GGNCC	5 cut(s)	380, 997, 1459, 1766, 1781
ClaI	ATCGAT	1 cut(s)	105
CseI	GACGC	2 cut(s)	9, 223
Csp6I	GTAC	5 cut(s)	403, 503, 1101, 1629, 1816
CviAII	CATG	5 cut(s)	643, 827, 1575, 1613, 1666
CviQI	GTAC	5 cut(s)	403, 503, 1101, 1629, 1816
DdeI	CTNAG	6 cut(s)	399, 425, 450, 460, 1244, 1455
DpnI	GATC	5 cut(s)	72, 1134, 1194, 1420, 1833
DpnII	GATC	5 cut(s)	70, 1132, 1192, 1418, 1831
EaeI	YGGCCR	2 cut(s)	9, 39
Eam1104I	CTCTTC	1 cut(s)	1014
EarI	CTCTTC	1 cut(s)	1014
EciI	GGCGGA	1 cut(s)	1609
Ecl136II	GAGCTC	1 cut(s)	631
Eco105I	TACGTA	1 cut(s)	1632
Eco130I	CCWWGG	4 cut(s)	1442, 1574, 1769, 1915
Eco147I	AGGCCT	1 cut(s)	1687
Eco24I	GRGCYC	2 cut(s)	633, 1778
Eco31I	GGTCTC	1 cut(s)	791
Eco32I	GATATC	1 cut(s)	109
Eco47I	GGWCC	3 cut(s)	997, 1766, 1781
Eco53kI	GAGCTC	1 cut(s)	631
Eco57I	CTGAAG	2 cut(s)	369, 936
Eco81I	CCTNAGG	1 cut(s)	1455
EcoICRI	GAGCTC	1 cut(s)	631
EcoNI	CCTNNNNNAGG	1 cut(s)	1788
EcoRII	CCWGG	7 cut(s)	603, 1399, 1408, 1588, 1762, 1777, 1909
EcoRV	GATATC	1 cut(s)	109
EcoT14I	CCWWGG	4 cut(s)	1442, 1574, 1769, 1915
EcoT38I	GRGCYC	2 cut(s)	633, 1778
ErhI	CCWWGG	4 cut(s)	1442, 1574, 1769, 1915
Esp3I	CGTCTC	1 cut(s)	1143
FaeI	CATG	5 cut(s)	646, 830, 1578, 1616, 1669
FalI	AAGNNNNNCTT	4 cut(s)	443, 475, 759, 791
FaqI	GGGAC	3 cut(s)	951, 1151, 1292
FatI	CATG	5 cut(s)	642, 826, 1574, 1612, 1665
FauI	CCCGC	3 cut(s)	901, 1369, 1720
FauNDI	CATATG	2 cut(s)	415, 744
FblI	GTMKAC	1 cut(s)	1259
Fnu4HI	GCNGC	9 cut(s)	179, 369, 468, 554, 647, 1481, 1505, 1694, 1788
FokI	GGATG	3 cut(s)	381, 632, 883
FriOI	GRGCYC	2 cut(s)	633, 1778
Fsp4HI	GCNGC	9 cut(s)	179, 369, 468, 554, 647, 1481, 1505, 1694, 1788
FspBI	CTAG	5 cut(s)	66, 537, 963, 1043, 1770
GluI	GCNGC	9 cut(s)	179, 369, 468, 554, 647, 1481, 1505, 1694, 1788
GsuI	CTGGAG	5 cut(s)	456, 913, 928, 1258, 1893
HaeIII	GGCC	7 cut(s)	11, 41, 382, 1460, 1480, 1687, 1914
HapII	CCGG	2 cut(s)	759, 1322
HgaI	GACGC	2 cut(s)	9, 223
Hin1II	CATG	5 cut(s)	646, 830, 1578, 1616, 1669
HincII	GTYRAC	2 cut(s)	709, 1260
HindII	GTYRAC	2 cut(s)	709, 1260
HindIII	AAGCTT	2 cut(s)	1392, 1862
HinfI	GANTC	6 cut(s)	116, 356, 608, 739, 941, 1639
HpaII	CCGG	2 cut(s)	759, 1322
HphI	GGTGA	2 cut(s)	244, 257
Hpy166II	GTNNAC	6 cut(s)	55, 355, 658, 709, 848, 1260
Hpy188I	TCNGA	6 cut(s)	78, 319, 1192, 1347, 1735, 1836
Hpy188III	TCNNGA	5 cut(s)	387, 435, 634, 788, 1902
Hpy8I	GTNNAC	6 cut(s)	55, 355, 658, 709, 848, 1260
Hpy99I	CGWCG	4 cut(s)	25, 28, 31, 34
HpyAV	CCTTC	7 cut(s)	165, 393, 522, 1044, 1103, 1395, 1813
HpyCH4III	ACNGT	2 cut(s)	803, 1334
HpyCH4IV	ACGT	2 cut(s)	14, 1631
HpyF3I	CTNAG	6 cut(s)	399, 425, 450, 460, 1244, 1455
HpySE526I	ACGT	2 cut(s)	14, 1631
Hsp92II	CATG	5 cut(s)	646, 830, 1578, 1616, 1669
KpnI	GGTACC	1 cut(s)	1104
Kzo9I	GATC	5 cut(s)	70, 1132, 1192, 1418, 1831
LmnI	GCTCC	5 cut(s)	475, 628, 932, 1679, 1773
Lsp1109I	GCAGC	7 cut(s)	190, 380, 479, 633, 1516, 1705, 1774
LweI	GCATC	8 cut(s)	403, 454, 820, 905, 1157, 1257, 1334, 1589
MaeI	CTAG	5 cut(s)	66, 537, 963, 1043, 1770
MaeII	ACGT	2 cut(s)	14, 1631
MaeIII	GTNAC	4 cut(s)	638, 938, 982, 1277
MalI	GATC	5 cut(s)	72, 1134, 1194, 1420, 1833
MboI	GATC	5 cut(s)	70, 1132, 1192, 1418, 1831
MflI	RGATCY	3 cut(s)	1132, 1418, 1831
MhlI	GDGCHC	3 cut(s)	633, 1450, 1778
MlsI	TGGCCA	1 cut(s)	11
MluI	ACGCGT	1 cut(s)	1176
MluNI	TGGCCA	1 cut(s)	11
MlyI	GAGTC	3 cut(s)	350, 935, 1633
MmeI	TCCRAC	1 cut(s)	1322
Mox20I	TGGCCA	1 cut(s)	11
MroXI	GAANNNNTTC	2 cut(s)	771, 1054
MscI	TGGCCA	1 cut(s)	11
MseI	TTAA	3 cut(s)	590, 794, 1866
MslI	CAYNNNNRTG	1 cut(s)	1670
Msp20I	TGGCCA	1 cut(s)	11
MspA1I	CMGCKG	1 cut(s)	884
MspCI	CTTAAG	1 cut(s)	1865
MspI	CCGG	2 cut(s)	759, 1322
MspR9I	CCNGG	7 cut(s)	605, 1401, 1410, 1590, 1764, 1779, 1911
Mva1269I	GAATGC	3 cut(s)	454, 537, 1054
MvaI	CCWGG	7 cut(s)	605, 1401, 1410, 1590, 1764, 1779, 1911
MvnI	CGCG	2 cut(s)	1178, 1715
NcoI	CCATGG	1 cut(s)	1574
NdeI	CATATG	2 cut(s)	415, 744
NdeII	GATC	5 cut(s)	70, 1132, 1192, 1418, 1831
NheI	GCTAGC	1 cut(s)	1042
NlaIII	CATG	5 cut(s)	646, 830, 1578, 1616, 1669
NlaIV	GGNNCC	6 cut(s)	928, 998, 1102, 1420, 1723, 1775
NmuCI	GTSAC	3 cut(s)	638, 938, 1277
NspI	RCATGY	2 cut(s)	646, 1669
PaqCI	CACCTGC	1 cut(s)	1207
PceI	AGGCCT	1 cut(s)	1687
PcsI	WCGNNNNNNNCGW	4 cut(s)	20, 29, 795, 1712
PctI	GAATGC	3 cut(s)	454, 537, 1054
PdmI	GAANNNNTTC	2 cut(s)	771, 1054
PfeI	GAWTC	3 cut(s)	116, 608, 739
PflFI	GACNNNGTC	1 cut(s)	783
PflMI	CCANNNNNTGG	2 cut(s)	1892, 1921
PfoI	TCCNGGA	1 cut(s)	1399
PkrI	GCNGC	9 cut(s)	180, 370, 469, 555, 648, 1482, 1506, 1695, 1789
PleI	GAGTC	3 cut(s)	350, 935, 1633
PpsI	GAGTC	3 cut(s)	350, 935, 1633
Ppu21I	YACGTR	1 cut(s)	1632
PshAI	GACNNNNGTC	1 cut(s)	945
Psp124BI	GAGCTC	1 cut(s)	633
Psp6I	CCWGG	7 cut(s)	603, 1399, 1408, 1588, 1762, 1777, 1909
PspGI	CCWGG	7 cut(s)	603, 1399, 1408, 1588, 1762, 1777, 1909
PspN4I	GGNNCC	6 cut(s)	928, 998, 1102, 1420, 1723, 1775
PspPI	GGNCC	5 cut(s)	380, 997, 1459, 1766, 1781
PsrI	GAACNNNNNNTAC	2 cut(s)	1691, 1723
PstI	CTGCAG	1 cut(s)	1792
PsuI	RGATCY	3 cut(s)	1132, 1418, 1831
PsyI	GACNNNGTC	1 cut(s)	783
PvuII	CAGCTG	1 cut(s)	884
RsaI	GTAC	5 cut(s)	404, 504, 1102, 1630, 1817
RsaNI	GTAC	5 cut(s)	403, 503, 1101, 1629, 1816
RseI	CAYNNNNRTG	1 cut(s)	1670
SacI	GAGCTC	1 cut(s)	633
SalI	GTCGAC	1 cut(s)	1258
SaqAI	TTAA	3 cut(s)	590, 794, 1866
SatI	GCNGC	9 cut(s)	179, 369, 468, 554, 647, 1481, 1505, 1694, 1788
Sau3AI	GATC	5 cut(s)	70, 1132, 1192, 1418, 1831
Sau96I	GGNCC	5 cut(s)	380, 997, 1459, 1766, 1781
ScaI	AGTACT	1 cut(s)	404
SchI	GAGTC	3 cut(s)	350, 935, 1633
ScrFI	CCNGG	7 cut(s)	605, 1401, 1410, 1590, 1764, 1779, 1911
SduI	GDGCHC	3 cut(s)	633, 1450, 1778
SfaNI	GCATC	8 cut(s)	403, 454, 820, 905, 1157, 1257, 1334, 1589
SfcI	CTRYAG	3 cut(s)	573, 834, 1788
SinI	GGWCC	3 cut(s)	997, 1766, 1781
SmiMI	CAYNNNNRTG	1 cut(s)	1670
SmlI	CTYRAG	4 cut(s)	516, 547, 634, 1865
SmoI	CTYRAG	4 cut(s)	516, 547, 634, 1865
SnaBI	TACGTA	1 cut(s)	1632
SseBI	AGGCCT	1 cut(s)	1687
SsiI	CCGC	8 cut(s)	50, 430, 553, 894, 1362, 1481, 1620, 1713
SspI	AATATT	1 cut(s)	1550
SspMI	CTAG	5 cut(s)	66, 537, 963, 1043, 1770
SstI	GAGCTC	1 cut(s)	633
StuI	AGGCCT	1 cut(s)	1687
StyD4I	CCNGG	7 cut(s)	603, 1399, 1408, 1588, 1762, 1777, 1909
StyI	CCWWGG	4 cut(s)	1442, 1574, 1769, 1915
TaaI	ACNGT	2 cut(s)	803, 1334
TaiI	ACGT	2 cut(s)	17, 1634
TaqI	TCGA	4 cut(s)	105, 789, 1048, 1259
TaqII	GACCGA	1 cut(s)	684
TatI	WGTACW	1 cut(s)	402
TauI	GCSGC	2 cut(s)	556, 1483
TfiI	GAWTC	3 cut(s)	116, 608, 739
Tru1I	TTAA	3 cut(s)	590, 794, 1866
Tru9I	TTAA	3 cut(s)	590, 794, 1866
TscAI	CASTG	8 cut(s)	49, 140, 719, 1111, 1158, 1282, 1677, 1732
TseFI	GTSAC	3 cut(s)	638, 938, 1277
TseI	GCWGC	7 cut(s)	178, 368, 467, 646, 1504, 1693, 1787
Tsp45I	GTSAC	3 cut(s)	638, 938, 1277
TspDTI	ATGAA	9 cut(s)	113, 702, 731, 780, 1023, 1029, 1044, 1331, 1795
TspGWI	ACGGA	3 cut(s)	109, 1125, 1131
TspRI	CASTG	8 cut(s)	49, 140, 719, 1111, 1158, 1282, 1677, 1732
Tth111I	GACNNNGTC	1 cut(s)	783
Van91I	CCANNNNNTGG	2 cut(s)	1892, 1921
Vha464I	CTTAAG	1 cut(s)	1865
VpaK11BI	GGWCC	3 cut(s)	997, 1766, 1781
XagI	CCTNNNNNAGG	1 cut(s)	1788
XapI	RAATTY	3 cut(s)	496, 586, 1031
XceI	RCATGY	2 cut(s)	646, 1669
XcmI	CCANNNNNNNNNTGG	3 cut(s)	49, 1111, 1397
XmaJI	CCTAGG	1 cut(s)	1769
XmiI	GTMKAC	1 cut(s)	1259
XmnI	GAANNNNTTC	2 cut(s)	771, 1054
XspI	CTAG	5 cut(s)	66, 537, 963, 1043, 1770
ZrmI	AGTACT	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.