Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0007838

Physical Location & Seq

Genomic Coordinates Forward (+)

9013732 .. 9018598

Gene Structure 4867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG112800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

ATGCAGCGGTCTGGAGTAGAGTTTCCTAAGCATTCCTTAGATGCAGCTCCAATGTTTGCACCACCTGTTGCAAATTCAGTACCAAGACCTTCTCAAGCTGGATATGGAATGCCTAGCAATTCCTCAAGGCGGCTTGATGAGACAATGGCTACAGAAAACGAAAATTTAACTTTGACAAGCCTGGATTCTATGAGGGATGTTATGGAGCTCTTGAGTGACATGCTGCAAGCTGTGAACCCTAATGACCGATTGGGTGTAAAAGATGAAGTCATAGTTGAACTTGTCAACCAGTGTCGTGCCAACCAGAAAAAGCTGATTCATATGCTAACTACAACCGGAGATGAAGAACTTCTTGGACGGGGTCTCGAATTAAACGACAGTCTGCAAAGTTTGCTTGCAAAGCATGATGCTATAGCTTCTGGTTTACCTTTGCCAACTGCAAACTTTAGTCCTCAATCAGCTGAAATGCCCGCATCCAGTTCCAAGCATACTGAAGCAAAAGACTCCAGCACAAGTGACTCCAGTCCAAGACCTAAAGCTAGTCCCTCTGCACCAGTTGTTACCACGTCAAGGGTCCAAATTGATGAAGATGAAGAAGAGGAAGATGAATTTGCACAGCTAGCTCGAAGGCATTCCAAACAAAGCTCCTCCAAGCCTACTGAAAGCACACCTAATGGTACCAGTGAAGGTTTGGCATTGGTAAGCGTAGATCCGTCTCCGTCTGCATCAGTGGCAACATCTGTCCCAAACAACGCGTTAGTTCTGTCTGATCCACCTGCTTCAAGTAAGACTACACAAGAGCAGAACATAATTGACCTACTGAGTATCACTTTGTCGACAACAGCAATCTCCAGTGACACCTCTCCTCCTCCTCCTCCAACATCAGTCCCTGCCCCACTTCCGGCATCTAACGGTAATGTTCATCAGATACCTGCTTCCCCCGCTATACAAGGCAATCCCTATCCTTCCCAAGCTTATCCTGGAAATCCTGGGCTTGGATCCTACAACAGCTATGTTGTTCCTTGGGCACAACCTCAGGCCCAACAACCTCAATTCAGGCCGCAATTACAGCCACAGCAACAGCAGCAACCTCAATTCCAGTCGCAGTTTCAACCTCAATATCCCCAATACTCTTCTGCCTACCCTCCTCCACCATGGGCATCTTCTCCTGGTTATCCTAACAACCAAAATCATGTGTCCGCCAACAGTACGTATGCGGCTTCTCACACCAACACAACAGCTTACATGCCAGCGCAAGGAGCAAGGCCTTTGCAGCAGTATAATTCATTCCCCGCGAGAGGAACCACTGGGTCAGATAACAACGGAGGTTTCCCAACAAATCCTGGTCCTAGGAGCCCTGGACCTGCTGCAGGACAAAAGCCCTTCATTCCCTCGTACAGATTATTTGAAGATCTGAATGTTTTTGGCAATGCTGATGGAAAGCTTAAGGTGGCGAACAGCAACCCATCATCTGGCTTCTCTGGAACTCCAGGCCAAGGTATGGTGGGTGGGAGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0007088 GO:0007154 GO:0007165 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016197 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0023052 GO:0030163 GO:0030276 GO:0031410 GO:0031982 GO:0032182 GO:0032509 GO:0032511 GO:0033036 GO:0033043 GO:0033365 GO:0034613 GO:0042886 GO:0043130 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0045786 GO:0045839 GO:0045930 GO:0046907 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0065007 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAT VHS

Protein Analysis

506

Amino Acids

53.73

Weight (kDa)

5.26

Isoelectric Point (pI)

62.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAT	PF03127	67 - 141	6.1e-19	GAT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38410
fragaria_vesca	FvH4_6g10390 FvH4_6g10390 FvH4_6g10390 FvH4_6g10390 FvH4_6g10390
malus_domestica	MD04G1169500.v1.1 MD12G1183500.v1.1
prunus_persica	Prupe.6G288000_v2.0.a1 Prupe.6G288000_v2.0.a1
pyrus_communis	pycom04g15020 pycom04g15030 pycom12g17210
rosa_chinensis	RchiOBHm_Chr3g0461281
rosa_laevigata	RLG00000024944
rosa_multiflora	Rmu_ssc0000326.1_g000008
rosa_roxburghii	Rroxscaffold_6G00418440 Rroxscaffold_6G00418730
rosa_rugosa	Rorug03G0049400
rosa_samantha	Rh3AG106700 Rh3BG110900 Rh3CG112800 Rh3DG112900
rosa_wichuraiana	Rw3G009140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	784
Acc36I	ACCTGC	3 cut(s)	784, 940, 1372
Acc65I	GGTACC	1 cut(s)	677
AccB1I	GGYRCC	1 cut(s)	677
AccB7I	CCANNNNNTGG	2 cut(s)	1472, 1501
AccI	GTMKAC	1 cut(s)	836
AccII	CGCG	2 cut(s)	755, 1295
AciI	CCGC	8 cut(s)	7, 130, 471, 942, 1061, 1200, 1217, 1293
AclWI	GGATC	4 cut(s)	704, 764, 993, 1006
AcsI	RAATTY	3 cut(s)	73, 163, 608
AcuI	CTGAAG	1 cut(s)	513
AfaI	GTAC	4 cut(s)	81, 679, 1210, 1397
AflII	CTTAAG	1 cut(s)	1445
AflIII	ACRYGT	1 cut(s)	753
AgsI	TTSAA	4 cut(s)	278, 783, 1112, 1409
AjiI	CACGTC	1 cut(s)	567
AjnI	CCWGG	7 cut(s)	180, 979, 988, 1168, 1342, 1357, 1489
AjuI	GAANNNNNNNTTGG	2 cut(s)	336, 368
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	3 cut(s)	134, 368, 720
AlwI	GGATC	4 cut(s)	704, 764, 993, 1006
AlwNI	CAGNNNCTG	1 cut(s)	890
AoxI	GGCC	4 cut(s)	1038, 1058, 1265, 1492
ApeKI	GCWGC	6 cut(s)	4, 44, 223, 1084, 1273, 1367
ApoI	RAATTY	3 cut(s)	73, 163, 608
Asp700I	GAANNNNTTC	2 cut(s)	348, 631
Asp718I	GGTACC	1 cut(s)	677
AspA2I	CCTAGG	1 cut(s)	1349
AspLEI	GCGC	1 cut(s)	1255
AspS9I	GGNCC	4 cut(s)	574, 1039, 1346, 1361
AsuNHI	GCTAGC	1 cut(s)	619
AvaII	GGWCC	3 cut(s)	574, 1346, 1361
AvrII	CCTAGG	1 cut(s)	1349
AxyI	CCTNAGG	1 cut(s)	1035
BaeGI	GKGCMC	1 cut(s)	1030
BamHI	GGATCC	1 cut(s)	998
BanI	GGYRCC	1 cut(s)	677
BanII	GRGCYC	2 cut(s)	210, 1358
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	6 cut(s)	16, 56, 210, 1096, 1285, 1354
BccI	CCATC	2 cut(s)	1430, 1474
BciT130I	CCWGG	7 cut(s)	182, 981, 990, 1170, 1344, 1359, 1491
BcoDI	GTCTC	3 cut(s)	134, 368, 720
BfaI	CTAG	4 cut(s)	114, 540, 620, 1350
BfmI	CTRYAG	3 cut(s)	150, 411, 1368
BfrI	CTTAAG	1 cut(s)	1445
BfuAI	ACCTGC	3 cut(s)	784, 940, 1372
BglII	AGATCT	1 cut(s)	1411
BisI	GCNGC	9 cut(s)	5, 45, 131, 224, 1061, 1085, 1218, 1274, 1368
BlnI	CCTAGG	1 cut(s)	1349
BlsI	GCNGC	9 cut(s)	6, 46, 132, 225, 1062, 1086, 1219, 1275, 1369
Bme1390I	CCNGG	7 cut(s)	182, 981, 990, 1170, 1344, 1359, 1491
Bme18I	GGWCC	3 cut(s)	574, 1346, 1361
BmgBI	CACGTC	1 cut(s)	567
BmgT120I	GGNCC	4 cut(s)	574, 1039, 1346, 1361
BmiI	GGNNCC	5 cut(s)	575, 679, 1000, 1303, 1355
BmrFI	CCNGG	7 cut(s)	182, 981, 990, 1170, 1344, 1359, 1491
BmrI	ACTGGG	1 cut(s)	1317
BmsI	GCATC	6 cut(s)	31, 397, 482, 734, 914, 1169
BmtI	GCTAGC	1 cut(s)	623
BmuI	ACTGGG	1 cut(s)	1317
BoxI	GACNNNNGTC	1 cut(s)	522
BpmI	CTGGAG	5 cut(s)	33, 490, 505, 835, 1473
Bpu10I	CCTNAGC	1 cut(s)	27
BpuEI	CTTGAG	3 cut(s)	78, 109, 232
BsaAI	YACGTR	1 cut(s)	1212
BsaI	GGTCTC	1 cut(s)	368
BsaJI	CCNNGG	6 cut(s)	989, 1022, 1154, 1349, 1357, 1495
BsaWI	WCCGGW	1 cut(s)	335
BsaXI	ACNNNNNCTCC	2 cut(s)	850, 880
Bse1I	ACTGG	8 cut(s)	289, 477, 522, 554, 681, 852, 1099, 1312
Bse21I	CCTNAGG	1 cut(s)	1035
Bse3DI	GCAATG	1 cut(s)	1435
BseBI	CCWGG	7 cut(s)	182, 981, 990, 1170, 1344, 1359, 1491
BseDI	CCNNGG	6 cut(s)	989, 1022, 1154, 1349, 1357, 1495
BseGI	GGATG	2 cut(s)	202, 473
BseMI	GCAATG	1 cut(s)	1435
BseMII	CTCAG	2 cut(s)	812, 1049
BseNI	ACTGG	8 cut(s)	289, 477, 522, 554, 681, 852, 1099, 1312
BseRI	GAGGAG	6 cut(s)	637, 855, 858, 861, 864, 1137
BseSI	GKGCMC	1 cut(s)	1030
BseXI	GCAGC	6 cut(s)	16, 56, 210, 1096, 1285, 1354
BsgI	GTGCAG	1 cut(s)	534
Bsh1236I	CGCG	2 cut(s)	755, 1295
BshFI	GGCC	4 cut(s)	1040, 1060, 1267, 1494
BshNI	GGYRCC	1 cut(s)	677
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	2 cut(s)	336, 902
BslFI	GGGAC	3 cut(s)	528, 728, 872
BsmAI	GTCTC	3 cut(s)	134, 368, 720
BsmBI	CGTCTC	1 cut(s)	720
BsmFI	GGGAC	3 cut(s)	528, 728, 872
BsmI	GAATGC	3 cut(s)	31, 114, 631
BsnI	GGCC	4 cut(s)	1040, 1060, 1267, 1494
Bso31I	GGTCTC	1 cut(s)	368
Bsp1286I	GDGCHC	3 cut(s)	210, 1030, 1358
Bsp143I	GATC	4 cut(s)	709, 769, 998, 1411
Bsp19I	CCATGG	1 cut(s)	1154
BspACI	CCGC	8 cut(s)	7, 130, 471, 942, 1061, 1200, 1217, 1293
BspANI	GGCC	4 cut(s)	1040, 1060, 1267, 1494
BspCNI	CTCAG	2 cut(s)	813, 1048
BspFNI	CGCG	2 cut(s)	755, 1295
BspLI	GGNNCC	5 cut(s)	575, 679, 1000, 1303, 1355
BspMAI	CTGCAG	1 cut(s)	1372
BspMI	ACCTGC	3 cut(s)	784, 940, 1372
BspOI	GCTAGC	1 cut(s)	623
BspPI	GGATC	4 cut(s)	704, 764, 993, 1006
BspT107I	GGYRCC	1 cut(s)	677
BspTI	CTTAAG	1 cut(s)	1445
BspTNI	GGTCTC	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	1435
BsrI	ACTGG	8 cut(s)	289, 477, 522, 554, 681, 852, 1099, 1312
BssECI	CCNNGG	6 cut(s)	989, 1022, 1154, 1349, 1357, 1495
BssMI	GATC	4 cut(s)	709, 769, 998, 1411
BssT1I	CCWWGG	4 cut(s)	1022, 1154, 1349, 1495
Bst2UI	CCWGG	7 cut(s)	182, 981, 990, 1170, 1344, 1359, 1491
Bst4CI	ACNGT	3 cut(s)	380, 914, 1208
Bst6I	CTCTTC	2 cut(s)	591, 1138
BstAFI	CTTAAG	1 cut(s)	1445
BstAPI	GCANNNNNTGC	1 cut(s)	391
BstBAI	YACGTR	1 cut(s)	1212
BstC8I	GCNNGC	5 cut(s)	228, 396, 471, 621, 1251
BstDEI	CTNAG	4 cut(s)	27, 37, 821, 1035
BstDSI	CCRYGG	1 cut(s)	1154
BstENI	CCTNNNNNAGG	1 cut(s)	1368
BstF5I	GGATG	2 cut(s)	202, 473
BstFNI	CGCG	2 cut(s)	755, 1295
BstHHI	GCGC	1 cut(s)	1255
BstKTI	GATC	4 cut(s)	712, 772, 1001, 1414
BstMAI	GTCTC	3 cut(s)	134, 368, 720
BstMBI	GATC	4 cut(s)	709, 769, 998, 1411
BstMWI	GCNNNNNNNGC	9 cut(s)	391, 400, 620, 731, 941, 1069, 1084, 1259, 1273
BstNI	CCWGG	7 cut(s)	182, 981, 990, 1170, 1344, 1359, 1491
BstNSI	RCATGY	2 cut(s)	223, 1249
BstPAI	GACNNNNGTC	1 cut(s)	522
BstSCI	CCNGG	7 cut(s)	180, 979, 988, 1168, 1342, 1357, 1489
BstSFI	CTRYAG	3 cut(s)	150, 411, 1368
BstSLI	GKGCMC	1 cut(s)	1030
BstSNI	TACGTA	1 cut(s)	1212
BstUI	CGCG	2 cut(s)	755, 1295
BstV1I	GCAGC	6 cut(s)	16, 56, 210, 1096, 1285, 1354
BstX2I	RGATCY	3 cut(s)	709, 998, 1411
BstYI	RGATCY	3 cut(s)	709, 998, 1411
Bsu36I	CCTNAGG	1 cut(s)	1035
BsuRI	GGCC	4 cut(s)	1040, 1060, 1267, 1494
BtgI	CCRYGG	1 cut(s)	1154
BtrI	CACGTC	1 cut(s)	567
BtsCI	GGATG	2 cut(s)	202, 473
BtsIMutI	CAGTG	5 cut(s)	296, 688, 735, 859, 1305
BveI	ACCTGC	3 cut(s)	784, 940, 1372
Cac8I	GCNNGC	5 cut(s)	228, 396, 471, 621, 1251
CaiI	CAGNNNCTG	1 cut(s)	890
CfoI	GCGC	1 cut(s)	1255
Cfr13I	GGNCC	4 cut(s)	574, 1039, 1346, 1361
Csp6I	GTAC	4 cut(s)	80, 678, 1209, 1396
CviAII	CATG	5 cut(s)	220, 404, 1155, 1193, 1246
CviQI	GTAC	4 cut(s)	80, 678, 1209, 1396
DdeI	CTNAG	4 cut(s)	27, 37, 821, 1035
DpnI	GATC	4 cut(s)	711, 771, 1000, 1413
DpnII	GATC	4 cut(s)	709, 769, 998, 1411
Eam1104I	CTCTTC	2 cut(s)	591, 1138
EarI	CTCTTC	2 cut(s)	591, 1138
EciI	GGCGGA	1 cut(s)	1189
Ecl136II	GAGCTC	1 cut(s)	208
Eco105I	TACGTA	1 cut(s)	1212
Eco130I	CCWWGG	4 cut(s)	1022, 1154, 1349, 1495
Eco147I	AGGCCT	1 cut(s)	1267
Eco24I	GRGCYC	2 cut(s)	210, 1358
Eco31I	GGTCTC	1 cut(s)	368
Eco47I	GGWCC	3 cut(s)	574, 1346, 1361
Eco53kI	GAGCTC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	513
Eco81I	CCTNAGG	1 cut(s)	1035
EcoICRI	GAGCTC	1 cut(s)	208
EcoNI	CCTNNNNNAGG	1 cut(s)	1368
EcoRII	CCWGG	7 cut(s)	180, 979, 988, 1168, 1342, 1357, 1489
EcoT14I	CCWWGG	4 cut(s)	1022, 1154, 1349, 1495
EcoT38I	GRGCYC	2 cut(s)	210, 1358
ErhI	CCWWGG	4 cut(s)	1022, 1154, 1349, 1495
Esp3I	CGTCTC	1 cut(s)	720
FaeI	CATG	5 cut(s)	223, 407, 1158, 1196, 1249
FalI	AAGNNNNNCTT	4 cut(s)	20, 52, 336, 368
FaqI	GGGAC	3 cut(s)	528, 728, 872
FatI	CATG	5 cut(s)	219, 403, 1154, 1192, 1245
FauI	CCCGC	3 cut(s)	478, 949, 1300
FauNDI	CATATG	1 cut(s)	321
FblI	GTMKAC	1 cut(s)	836
Fnu4HI	GCNGC	9 cut(s)	5, 45, 131, 224, 1061, 1085, 1218, 1274, 1368
FokI	GGATG	2 cut(s)	209, 460
FriOI	GRGCYC	2 cut(s)	210, 1358
Fsp4HI	GCNGC	9 cut(s)	5, 45, 131, 224, 1061, 1085, 1218, 1274, 1368
FspBI	CTAG	4 cut(s)	114, 540, 620, 1350
GlaI	GCGC	1 cut(s)	1254
GluI	GCNGC	9 cut(s)	5, 45, 131, 224, 1061, 1085, 1218, 1274, 1368
GsuI	CTGGAG	5 cut(s)	33, 490, 505, 835, 1473
HaeIII	GGCC	4 cut(s)	1040, 1060, 1267, 1494
HapII	CCGG	2 cut(s)	336, 902
HhaI	GCGC	1 cut(s)	1255
Hin1II	CATG	5 cut(s)	223, 407, 1158, 1196, 1249
Hin6I	GCGC	1 cut(s)	1253
HinP1I	GCGC	1 cut(s)	1253
HincII	GTYRAC	2 cut(s)	286, 837
HindII	GTYRAC	2 cut(s)	286, 837
HindIII	AAGCTT	2 cut(s)	972, 1442
HinfI	GANTC	4 cut(s)	185, 316, 503, 518
HpaII	CCGG	2 cut(s)	336, 902
Hpy166II	GTNNAC	4 cut(s)	235, 286, 425, 837
Hpy188I	TCNGA	4 cut(s)	769, 927, 1315, 1416
Hpy188III	TCNNGA	4 cut(s)	12, 211, 365, 1482
Hpy8I	GTNNAC	4 cut(s)	235, 286, 425, 837
HpyAV	CCTTC	5 cut(s)	99, 621, 680, 975, 1393
HpyCH4III	ACNGT	3 cut(s)	380, 914, 1208
HpyCH4IV	ACGT	2 cut(s)	566, 1211
HpyF10VI	GCNNNNNNNGC	9 cut(s)	391, 400, 620, 731, 941, 1069, 1084, 1259, 1273
HpyF3I	CTNAG	4 cut(s)	27, 37, 821, 1035
HpySE526I	ACGT	2 cut(s)	566, 1211
Hsp92II	CATG	5 cut(s)	223, 407, 1158, 1196, 1249
HspAI	GCGC	1 cut(s)	1253
KpnI	GGTACC	1 cut(s)	681
Kzo9I	GATC	4 cut(s)	709, 769, 998, 1411
LmnI	GCTCC	5 cut(s)	52, 205, 650, 1259, 1353
Lsp1109I	GCAGC	6 cut(s)	16, 56, 210, 1096, 1285, 1354
LweI	GCATC	6 cut(s)	31, 397, 482, 734, 914, 1169
MaeI	CTAG	4 cut(s)	114, 540, 620, 1350
MaeII	ACGT	2 cut(s)	566, 1211
MaeIII	GTNAC	4 cut(s)	215, 515, 559, 854
MalI	GATC	4 cut(s)	711, 771, 1000, 1413
MboI	GATC	4 cut(s)	709, 769, 998, 1411
MboII	GAAGA	8 cut(s)	356, 599, 605, 608, 614, 1125, 1155, 1421
MflI	RGATCY	3 cut(s)	709, 998, 1411
MhlI	GDGCHC	3 cut(s)	210, 1030, 1358
MluI	ACGCGT	1 cut(s)	753
MlyI	GAGTC	2 cut(s)	497, 512
MmeI	TCCRAC	1 cut(s)	902
MroXI	GAANNNNTTC	2 cut(s)	348, 631
MseI	TTAA	3 cut(s)	167, 371, 1446
MspA1I	CMGCKG	2 cut(s)	7, 461
MspCI	CTTAAG	1 cut(s)	1445
MspI	CCGG	2 cut(s)	336, 902
MspR9I	CCNGG	7 cut(s)	182, 981, 990, 1170, 1344, 1359, 1491
Mva1269I	GAATGC	3 cut(s)	31, 114, 631
MvaI	CCWGG	7 cut(s)	182, 981, 990, 1170, 1344, 1359, 1491
MvnI	CGCG	2 cut(s)	755, 1295
MwoI	GCNNNNNNNGC	9 cut(s)	391, 400, 620, 731, 941, 1069, 1084, 1259, 1273
NcoI	CCATGG	1 cut(s)	1154
NdeI	CATATG	1 cut(s)	321
NdeII	GATC	4 cut(s)	709, 769, 998, 1411
NheI	GCTAGC	1 cut(s)	619
NlaIII	CATG	5 cut(s)	223, 407, 1158, 1196, 1249
NlaIV	GGNNCC	5 cut(s)	575, 679, 1000, 1303, 1355
NmuCI	GTSAC	3 cut(s)	215, 515, 854
NspI	RCATGY	2 cut(s)	223, 1249
PaqCI	CACCTGC	1 cut(s)	784
PceI	AGGCCT	1 cut(s)	1267
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PctI	GAATGC	3 cut(s)	31, 114, 631
PdmI	GAANNNNTTC	2 cut(s)	348, 631
PfeI	GAWTC	2 cut(s)	185, 316
PflFI	GACNNNGTC	1 cut(s)	360
PflMI	CCANNNNNTGG	2 cut(s)	1472, 1501
PfoI	TCCNGGA	1 cut(s)	979
PkrI	GCNGC	9 cut(s)	6, 46, 132, 225, 1062, 1086, 1219, 1275, 1369
PleI	GAGTC	2 cut(s)	497, 512
PpsI	GAGTC	2 cut(s)	497, 512
Ppu21I	YACGTR	1 cut(s)	1212
PshAI	GACNNNNGTC	1 cut(s)	522
Psp124BI	GAGCTC	1 cut(s)	210
Psp6I	CCWGG	7 cut(s)	180, 979, 988, 1168, 1342, 1357, 1489
PspGI	CCWGG	7 cut(s)	180, 979, 988, 1168, 1342, 1357, 1489
PspN4I	GGNNCC	5 cut(s)	575, 679, 1000, 1303, 1355
PspPI	GGNCC	4 cut(s)	574, 1039, 1346, 1361
PstI	CTGCAG	1 cut(s)	1372
PstNI	CAGNNNCTG	1 cut(s)	890
PsuI	RGATCY	3 cut(s)	709, 998, 1411
PsyI	GACNNNGTC	1 cut(s)	360
PvuII	CAGCTG	1 cut(s)	461
RsaI	GTAC	4 cut(s)	81, 679, 1210, 1397
RsaNI	GTAC	4 cut(s)	80, 678, 1209, 1396
SacI	GAGCTC	1 cut(s)	210
SalI	GTCGAC	1 cut(s)	835
SaqAI	TTAA	3 cut(s)	167, 371, 1446
SatI	GCNGC	9 cut(s)	5, 45, 131, 224, 1061, 1085, 1218, 1274, 1368
Sau3AI	GATC	4 cut(s)	709, 769, 998, 1411
Sau96I	GGNCC	4 cut(s)	574, 1039, 1346, 1361
SchI	GAGTC	2 cut(s)	497, 512
ScrFI	CCNGG	7 cut(s)	182, 981, 990, 1170, 1344, 1359, 1491
SduI	GDGCHC	3 cut(s)	210, 1030, 1358
SfaNI	GCATC	6 cut(s)	31, 397, 482, 734, 914, 1169
SfcI	CTRYAG	3 cut(s)	150, 411, 1368
SinI	GGWCC	3 cut(s)	574, 1346, 1361
SmlI	CTYRAG	4 cut(s)	93, 124, 211, 1445
SmoI	CTYRAG	4 cut(s)	93, 124, 211, 1445
SnaBI	TACGTA	1 cut(s)	1212
SseBI	AGGCCT	1 cut(s)	1267
SsiI	CCGC	8 cut(s)	7, 130, 471, 942, 1061, 1200, 1217, 1293
SspMI	CTAG	4 cut(s)	114, 540, 620, 1350
SstI	GAGCTC	1 cut(s)	210
StuI	AGGCCT	1 cut(s)	1267
StyD4I	CCNGG	7 cut(s)	180, 979, 988, 1168, 1342, 1357, 1489
StyI	CCWWGG	4 cut(s)	1022, 1154, 1349, 1495
TaaI	ACNGT	3 cut(s)	380, 914, 1208
TaiI	ACGT	2 cut(s)	569, 1214
TaqI	TCGA	3 cut(s)	366, 625, 836
TaqII	GACCGA	1 cut(s)	261
TauI	GCSGC	3 cut(s)	133, 1063, 1220
TfiI	GAWTC	2 cut(s)	185, 316
Tru1I	TTAA	3 cut(s)	167, 371, 1446
Tru9I	TTAA	3 cut(s)	167, 371, 1446
TscAI	CASTG	5 cut(s)	296, 688, 735, 859, 1312
TseFI	GTSAC	3 cut(s)	215, 515, 854
TseI	GCWGC	6 cut(s)	4, 44, 223, 1084, 1273, 1367
Tsp45I	GTSAC	3 cut(s)	215, 515, 854
TspDTI	ATGAA	9 cut(s)	279, 308, 357, 600, 606, 621, 911, 1275, 1375
TspGWI	ACGGA	3 cut(s)	702, 708, 1338
TspRI	CASTG	5 cut(s)	296, 688, 735, 859, 1312
Tth111I	GACNNNGTC	1 cut(s)	360
Van91I	CCANNNNNTGG	2 cut(s)	1472, 1501
Vha464I	CTTAAG	1 cut(s)	1445
VpaK11BI	GGWCC	3 cut(s)	574, 1346, 1361
XagI	CCTNNNNNAGG	1 cut(s)	1368
XapI	RAATTY	3 cut(s)	73, 163, 608
XceI	RCATGY	2 cut(s)	223, 1249
XcmI	CCANNNNNNNNNTGG	2 cut(s)	688, 977
XmaJI	CCTAGG	1 cut(s)	1349
XmiI	GTMKAC	1 cut(s)	836
XmnI	GAANNNNTTC	2 cut(s)	348, 631
XspI	CTAG	4 cut(s)	114, 540, 620, 1350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.