Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0014160

Physical Location & Seq

Genomic Coordinates Forward (+)

18121301 .. 18123361

Gene Structure 2061 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g15230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2061 bp

ATGGCAATATCTCCGCAAGCATTTCCACCGCGAAAACGCCAGCCCTCGGCGGGGGCCTTCATATCGCCCAAGCTCTCCGACCAGACCCTCCTCCGCTCCCTCCACCATCTCTCCCAAGAAATCTCCTCCCTCGAGCCGCTCCAGTTCCTCCTGCGCCGCACCTCCCTCTCCGTGATCCGCAGGTCAACCCTCCTCTCCATCTTCTTCGAAGACATCATCCGCAGCTCCACCGCCGTCTTCTCCCACTCCGCCATCCTCTGCTTCCAGGAGCTCTACATCCTGCTCCAGAGGATCCAGACCCTTCTCGAAGACTCCTCCAACGGCAGCCGGATGTGGCTCCTCCTCCAGACCGAGTCTCTAGCGAACAGCTTCCACGAGCTCACCCTCGACCTCTCCACCTTACTCGACATCCTCCCCATCAAGGAGCTACGATTAAACGACGACGTAGAAGAGGTCGTCTCCCTCCTCCGCACCCAGTGCTCCCGCAGCACCACGAAGTCGTTCGTCGATCCAAGAGACGACGGCCTGCGCCTCGAGGTCTGCTCCATACTCGACCGCCTCAGGAGCGAGATCGTTCCCGACCACTCCAAGCTCTCCGATATTTTCACGCAATTGGGAATTCGCGATGCTTCGGATTGCAGAGAGGAGCTTAAGAGCCTCCAGGAAGAGTTCCAGAACCAGACGGAGGAGAAATCCAAGTCGCAGCTCGTTGCCCTCGTCGGACTCGTTCGCTACGGTAAGTGCGTGTTATTCGGAGCATCCACGCCGGCATCGGACCTAATCCGCCTTAAATCGGCGTCGGAATTAAGTTTCCCGGCGGATTTCCGGTGCCCGATCAGTTTGGAGCTAATGCGGGACCCGGTCACCGTGGCGACCGGGCAGACGTACGATCGTGAGTCCATCAAGCTGTGGATCGAAGCGGGTCACAACACGTGTCCCAAGACAGGTCAGACCCTGGGCCACACTGAGCTCATCCCCAACCGCGCGTTGAAAAATCTCATCGCCATGTGGTGCCGCCAGCAGAAAATCCCTTTCGAAACCGCGGAGACTAATAAGGGGCTGGTCAACGCCATCAAAAAGAACAAGGCGGCGCTCGAAGCTACTAGAATGACGGCATCGTTTCTGGTCAATAAGCTTTCGGTGTCTCAGTCCATGGAGGCGGCGAACGGCGTCGTTTACGAGCTCCGGAGTCTGGCGAAGACGGACGCCGACTGTCGCGCCTGCATTGCGGAAGCTGGGGCTATTCCTTTGCTCGTACGGTACCTGGGCGCGGATGTCGGTGGGGCCCGTCCGAACCTGCAGGTTAACGCCGTGACGACGATTCTAAACCTTTCTCTTTTGGAAGCGAACAAAACGCGGATCATGGAGACGGACGGAGCTCTTAACGGCATCATCGAGGTGCTGAGGTCGGGGGCCACGTGGGAGGCGAAGGGGAATGCGGCGGCTACGATATTCAGTTTATCAGGTGTGCACGGGTACAGGAAGAGACTGGGGAGGAAGACACGCGTCATAAACGGGTTAGTGGAGCTGGCGAGGGATGGACCCGAGCACGGATGCTTTAAAAAGGACGCCATGGTGGCGATATTGAATTTGGCGGGAGAGAGGGAGGCAGTGGCGAGATTGGTGGAAGGTGGGGTGGTGGAGACGACCTTGCAAGTGATGGAGGGGTTGCCGGAGGAGGCGGTGACTGTGTTGGAAATTGTGGTGAGAAGCGGCGGACTAGTGGCCGTTGCCGCGGCGTACGGCGCGATGAGGAAATTGGTAAGTGTGTTGAGAGAAGGGTCGGACAGGGCGAGGGAGAGCGCGGCGGCGACGCTGGTGACAATTTGTCGAAAAGGGGGATCGGAAATGGTGGCGGAATTGGCGTCAATGCCGGAGATTGAGAGGGTGATATGGGGATTGATGGGGGTGGGGACGGTGAGGGCAAGGCGGAAGGCAGCGTCGCTGTTGAGGATTCTTAGGAGATGGGCTGCGGGTTTGGGCAGTGAGGTTGCGGAGGTGGGATATTCAACGGTGAATCATGTGAGTACATCGACAACGGCGACAATAGTGGCAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0010033 GO:0010200 GO:0010243 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

687

Amino Acids

74.97

Weight (kDa)

8.5

Isoelectric Point (pI)

41.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUB10_N	PF25368	52 - 163	2.2e-11	PUB10-like, N-terminal domain
U-box	PF04564	272 - 342	1.7e-19	U-box domain
ARM_PUB	PF25598	376 - 655	2.2e-15	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01830
fragaria_vesca	FvH4_5g29050
malus_domestica	MD04G1172400.v1.1 MD12G1185600.v1.1
prunus_persica	Prupe.6G290800_v2.0.a1
pyrus_communis	pycom04g15230 pycom12g17420
rosa_chinensis	RchiOBHm_Chr3g0460861
rosa_laevigata	RLG00000024973
rosa_multiflora	Rmu_sc0009011.1_g000007
rosa_roxburghii	Rroxscaffold_6G00419150
rosa_rugosa	Rorug03G0047000
rosa_samantha	Rh3AG104100 Rh3BG107800 Rh3CG109600 Rh3DG109600
rosa_wichuraiana	Rw3G008860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	533
Acc36I	ACCTGC	3 cut(s)	171, 1291, 1305
Acc65I	GGTACC	1 cut(s)	1260
AccB1I	GGYRCC	3 cut(s)	828, 1011, 1260
AccBSI	CCGCTC	2 cut(s)	96, 139
AccIII	TCCGGA	1 cut(s)	1185
AclWI	GGATC	7 cut(s)	169, 286, 299, 503, 920, 1367, 1849
AcoI	YGGCCR	1 cut(s)	1725
AcsI	RAATTY	2 cut(s)	618, 1588
AcvI	CACGTG	2 cut(s)	933, 1419
AcyI	GRCGYC	5 cut(s)	797, 1170, 1206, 1569, 1865
AdeI	CACNNNGTG	1 cut(s)	477
AfaI	GTAC	6 cut(s)	887, 1257, 1262, 1478, 1742, 2029
AflII	CTTAAG	1 cut(s)	650
AflIII	ACRYGT	3 cut(s)	930, 932, 1504
AgsI	TTSAA	3 cut(s)	991, 1588, 2010
AhdI	GACNNNNNGTC	1 cut(s)	1827
AhlI	ACTAGT	1 cut(s)	1720
AjnI	CCWGG	4 cut(s)	264, 660, 954, 1263
Alw21I	GWGCWC	8 cut(s)	273, 381, 482, 972, 1185, 1381, 1473, 1551
Alw26I	GTCTC	8 cut(s)	360, 463, 510, 1040, 1149, 1361, 1480, 1637
Alw44I	GTGCAC	1 cut(s)	1469
AlwI	GGATC	7 cut(s)	169, 286, 299, 503, 920, 1367, 1849
AlwNI	CAGNNNCTG	1 cut(s)	955
Ama87I	CYCGRG	3 cut(s)	131, 533, 1544
Aor13HI	TCCGGA	1 cut(s)	1185
AoxI	GGCC	6 cut(s)	54, 523, 958, 1284, 1413, 1725
ApaI	GGGCCC	1 cut(s)	1288
ApaLI	GTGCAC	1 cut(s)	1469
ApeKI	GCWGC	6 cut(s)	222, 324, 486, 703, 1937, 1970
ApoI	RAATTY	2 cut(s)	618, 1588
Asp700I	GAANNNNTTC	2 cut(s)	368, 500
Asp718I	GGTACC	1 cut(s)	1260
AspLEI	GCGC	8 cut(s)	156, 531, 986, 1093, 1220, 1271, 1748, 1805
AspS9I	GGNCC	8 cut(s)	54, 775, 856, 958, 1284, 1285, 1413, 1541
AsuC2I	CCSGG	3 cut(s)	815, 860, 877
AsuHPI	GGTGA	8 cut(s)	373, 856, 1696, 1717, 1831, 1900, 1930, 2026
AsuII	TTCGAA	2 cut(s)	207, 1035
AvaI	CYCGRG	3 cut(s)	131, 533, 1544
AvaII	GGWCC	3 cut(s)	775, 856, 1541
AxyI	CCTNAGG	1 cut(s)	560
BaeGI	GKGCMC	3 cut(s)	833, 1288, 1473
BamHI	GGATCC	1 cut(s)	291
BanI	GGYRCC	3 cut(s)	828, 1011, 1260
BanII	GRGCYC	6 cut(s)	273, 381, 972, 1185, 1288, 1381
BauI	CACGAG	1 cut(s)	374
BbrPI	CACGTG	2 cut(s)	933, 1419
BbsI	GAAGAC	5 cut(s)	216, 229, 315, 1205, 1505
Bbv12I	GWGCWC	8 cut(s)	273, 381, 482, 972, 1185, 1381, 1473, 1551
BbvCI	CCTCAGC	1 cut(s)	1403
BbvI	GCAGC	6 cut(s)	234, 336, 498, 715, 1949, 1957
BciT130I	CCWGG	4 cut(s)	266, 662, 956, 1265
BcnI	CCSGG	3 cut(s)	815, 860, 877
BcoDI	GTCTC	8 cut(s)	360, 463, 510, 1040, 1149, 1361, 1480, 1637
BcuI	ACTAGT	1 cut(s)	1720
BfaI	CTAG	3 cut(s)	359, 1104, 1721
BfmI	CTRYAG	1 cut(s)	1298
BfoI	RGCGCY	1 cut(s)	1094
BfrI	CTTAAG	1 cut(s)	650
BfuAI	ACCTGC	3 cut(s)	171, 1291, 1305
BglI	GCCNNNNNGGC	1 cut(s)	1577
Bme1390I	CCNGG	7 cut(s)	266, 662, 815, 860, 877, 956, 1265
Bme18I	GGWCC	3 cut(s)	775, 856, 1541
BmeRI	GACNNNNNGTC	1 cut(s)	1827
BmeT110I	CYCGRG	3 cut(s)	131, 533, 1544
BmgT120I	GGNCC	8 cut(s)	54, 775, 856, 958, 1284, 1285, 1413, 1541
BmrFI	CCNGG	7 cut(s)	266, 662, 815, 860, 877, 956, 1265
BmrI	ACTGGG	2 cut(s)	469, 1499
BmsI	GCATC	6 cut(s)	616, 767, 779, 1124, 1398, 1544
BmuI	ACTGGG	2 cut(s)	469, 1499
BoxI	GACNNNNGTC	1 cut(s)	1505
BpiI	GAAGAC	5 cut(s)	216, 229, 315, 1205, 1505
BplI	GAGNNNNNCTC	4 cut(s)	443, 475, 527, 559
BpmI	CTGGAG	4 cut(s)	125, 269, 329, 644
Bpu10I	CCTNAGC	1 cut(s)	1403
Bpu14I	TTCGAA	2 cut(s)	207, 1035
BpuMI	CCSGG	3 cut(s)	815, 860, 877
BsaAI	YACGTR	2 cut(s)	933, 1419
BsaHI	GRCGYC	5 cut(s)	797, 1170, 1206, 1569, 1865
BsaJI	CCNNGG	9 cut(s)	45, 867, 954, 955, 1041, 1152, 1264, 1572, 1734
BsaWI	WCCGGW	2 cut(s)	825, 1185
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bse118I	RCCGGY	1 cut(s)	766
Bse1I	ACTGG	3 cut(s)	142, 475, 1494
Bse21I	CCTNAGG	1 cut(s)	560
Bse3DI	GCAATG	1 cut(s)	1224
BseAI	TCCGGA	1 cut(s)	1185
BseBI	CCWGG	4 cut(s)	266, 662, 956, 1265
BseDI	CCNNGG	9 cut(s)	45, 867, 954, 955, 1041, 1152, 1264, 1572, 1734
BseMI	GCAATG	1 cut(s)	1224
BseMII	CTCAG	4 cut(s)	574, 957, 1160, 1394
BseNI	ACTGG	3 cut(s)	142, 475, 1494
BseSI	GKGCMC	3 cut(s)	833, 1288, 1473
BseXI	GCAGC	6 cut(s)	234, 336, 498, 715, 1949, 1957
BseYI	CCCAGC	1 cut(s)	1235
Bsh1285I	CGRYCG	3 cut(s)	556, 876, 892
BshFI	GGCC	6 cut(s)	56, 525, 960, 1286, 1415, 1727
BshNI	GGYRCC	3 cut(s)	828, 1011, 1260
BsiEI	CGRYCG	3 cut(s)	556, 876, 892
BsiHKAI	GWGCWC	8 cut(s)	273, 381, 482, 972, 1185, 1381, 1473, 1551
BsiHKCI	CYCGRG	3 cut(s)	131, 533, 1544
BsiSI	CCGG	9 cut(s)	328, 767, 815, 826, 860, 876, 1186, 1673, 1874
BsiWI	CGTACG	3 cut(s)	885, 1255, 1740
BslFI	GGGAC	3 cut(s)	869, 921, 1927
BsmAI	GTCTC	8 cut(s)	360, 463, 510, 1040, 1149, 1361, 1480, 1637
BsmBI	CGTCTC	4 cut(s)	463, 510, 1361, 1637
BsmFI	GGGAC	3 cut(s)	869, 921, 1927
BsmI	GAATGC	1 cut(s)	1441
BsnI	GGCC	6 cut(s)	56, 525, 960, 1286, 1415, 1727
BsoBI	CYCGRG	3 cut(s)	131, 533, 1544
Bsp119I	TTCGAA	2 cut(s)	207, 1035
Bsp120I	GGGCCC	1 cut(s)	1284
Bsp13I	TCCGGA	1 cut(s)	1185
Bsp143I	GATC	9 cut(s)	174, 291, 508, 570, 834, 889, 912, 1359, 1841
Bsp19I	CCATGG	2 cut(s)	1152, 1572
Bsp68I	TCGCGA	1 cut(s)	624
BspANI	GGCC	6 cut(s)	56, 525, 960, 1286, 1415, 1727
BspCNI	CTCAG	4 cut(s)	573, 958, 1159, 1395
BspEI	TCCGGA	1 cut(s)	1185
BspMAI	CTGCAG	1 cut(s)	1302
BspMI	ACCTGC	3 cut(s)	171, 1291, 1305
BspPI	GGATC	7 cut(s)	169, 286, 299, 503, 920, 1367, 1849
BspT104I	TTCGAA	2 cut(s)	207, 1035
BspT107I	GGYRCC	3 cut(s)	828, 1011, 1260
BspTI	CTTAAG	1 cut(s)	650
BsrBI	CCGCTC	2 cut(s)	96, 139
BsrDI	GCAATG	1 cut(s)	1224
BsrFI	RCCGGY	1 cut(s)	766
BsrI	ACTGG	3 cut(s)	142, 475, 1494
BssAI	RCCGGY	1 cut(s)	766
BssECI	CCNNGG	9 cut(s)	45, 867, 954, 955, 1041, 1152, 1264, 1572, 1734
BssMI	GATC	9 cut(s)	174, 291, 508, 570, 834, 889, 912, 1359, 1841
BssNI	GRCGYC	5 cut(s)	797, 1170, 1206, 1569, 1865
BssSI	CACGAG	1 cut(s)	374
BssT1I	CCWWGG	2 cut(s)	1152, 1572
Bst2BI	CACGAG	1 cut(s)	374
Bst2UI	CCWGG	4 cut(s)	266, 662, 956, 1265
Bst4CI	ACNGT	7 cut(s)	737, 868, 1214, 1260, 1690, 1918, 2014
Bst6I	CTCTTC	3 cut(s)	444, 660, 1478
BstACI	GRCGYC	5 cut(s)	797, 1170, 1206, 1569, 1865
BstAFI	CTTAAG	1 cut(s)	650
BstAPI	GCANNNNNTGC	1 cut(s)	477
BstBAI	YACGTR	2 cut(s)	933, 1419
BstBI	TTCGAA	2 cut(s)	207, 1035
BstC8I	GCNNGC	7 cut(s)	18, 41, 527, 768, 1019, 1222, 1530
BstDEI	CTNAG	5 cut(s)	560, 966, 1146, 1403, 1958
BstDSI	CCRYGG	5 cut(s)	867, 1041, 1152, 1572, 1734
BstEII	GGTNACC	1 cut(s)	862
BstH2I	RGCGCY	1 cut(s)	1094
BstHHI	GCGC	8 cut(s)	156, 531, 986, 1093, 1220, 1271, 1748, 1805
BstKTI	GATC	9 cut(s)	177, 294, 511, 573, 837, 892, 915, 1362, 1844
BstMAI	GTCTC	8 cut(s)	360, 463, 510, 1040, 1149, 1361, 1480, 1637
BstMBI	GATC	9 cut(s)	174, 291, 508, 570, 834, 889, 912, 1359, 1841
BstMCI	CGRYCG	3 cut(s)	556, 876, 892
BstMWI	GCNNNNNNNGC	9 cut(s)	477, 486, 564, 1097, 1226, 1577, 1733, 1745, 1862
BstNI	CCWGG	4 cut(s)	266, 662, 956, 1265
BstPAI	GACNNNNGTC	1 cut(s)	1505
BstPI	GGTNACC	1 cut(s)	862
BstSCI	CCNGG	7 cut(s)	264, 660, 813, 858, 875, 954, 1263
BstSFI	CTRYAG	1 cut(s)	1298
BstSLI	GKGCMC	3 cut(s)	833, 1288, 1473
BstV1I	GCAGC	6 cut(s)	234, 336, 498, 715, 1949, 1957
BstV2I	GAAGAC	5 cut(s)	216, 229, 315, 1205, 1505
BstX2I	RGATCY	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	291
Bsu36I	CCTNAGG	1 cut(s)	560
BsuRI	GGCC	6 cut(s)	56, 525, 960, 1286, 1415, 1727
BtgI	CCRYGG	5 cut(s)	867, 1041, 1152, 1572, 1734
BtgZI	GCGATG	3 cut(s)	639, 985, 1763
BtsI	GCAGTG	2 cut(s)	1617, 1990
BtsIMutI	CAGTG	4 cut(s)	482, 963, 1617, 1990
BtuMI	TCGCGA	1 cut(s)	624
BveI	ACCTGC	3 cut(s)	171, 1291, 1305
Cac8I	GCNNGC	7 cut(s)	18, 41, 527, 768, 1019, 1222, 1530
CaiI	CAGNNNCTG	1 cut(s)	955
CfoI	GCGC	8 cut(s)	156, 531, 986, 1093, 1220, 1271, 1748, 1805
Cfr10I	RCCGGY	1 cut(s)	766
Cfr13I	GGNCC	8 cut(s)	54, 775, 856, 958, 1284, 1285, 1413, 1541
Cfr42I	CCGCGG	2 cut(s)	1044, 1737
CseI	GACGC	8 cut(s)	786, 1159, 1214, 1495, 1577, 1822, 1854, 1929
Csp6I	GTAC	6 cut(s)	886, 1256, 1261, 1477, 1741, 2028
CviAII	CATG	5 cut(s)	1006, 1153, 1363, 1573, 2021
CviQI	GTAC	6 cut(s)	886, 1256, 1261, 1477, 1741, 2028
DdeI	CTNAG	5 cut(s)	560, 966, 1146, 1403, 1958
DpnI	GATC	9 cut(s)	176, 293, 510, 572, 836, 891, 914, 1361, 1843
DpnII	GATC	9 cut(s)	174, 291, 508, 570, 834, 889, 912, 1359, 1841
DraI	TTTAAA	1 cut(s)	1561
DraIII	CACNNNGTG	1 cut(s)	477
DriI	GACNNNNNGTC	1 cut(s)	1827
EaeI	YGGCCR	1 cut(s)	1725
Eam1104I	CTCTTC	3 cut(s)	444, 660, 1478
Eam1105I	GACNNNNNGTC	1 cut(s)	1827
EarI	CTCTTC	3 cut(s)	444, 660, 1478
EciI	GGCGGA	6 cut(s)	238, 773, 833, 1731, 1871, 1945
Ecl136II	GAGCTC	5 cut(s)	271, 379, 970, 1183, 1379
Eco130I	CCWWGG	2 cut(s)	1152, 1572
Eco24I	GRGCYC	6 cut(s)	273, 381, 972, 1185, 1288, 1381
Eco47I	GGWCC	3 cut(s)	775, 856, 1541
Eco53kI	GAGCTC	5 cut(s)	271, 379, 970, 1183, 1379
Eco72I	CACGTG	2 cut(s)	933, 1419
Eco81I	CCTNAGG	1 cut(s)	560
Eco88I	CYCGRG	3 cut(s)	131, 533, 1544
Eco91I	GGTNACC	1 cut(s)	862
EcoICRI	GAGCTC	5 cut(s)	271, 379, 970, 1183, 1379
EcoO109I	RGGNCCY	3 cut(s)	54, 856, 1284
EcoO65I	GGTNACC	1 cut(s)	862
EcoRI	GAATTC	1 cut(s)	618
EcoRII	CCWGG	4 cut(s)	264, 660, 954, 1263
EcoT14I	CCWWGG	2 cut(s)	1152, 1572
EcoT38I	GRGCYC	6 cut(s)	273, 381, 972, 1185, 1288, 1381
ErhI	CCWWGG	2 cut(s)	1152, 1572
Esp3I	CGTCTC	4 cut(s)	463, 510, 1361, 1637
FaeI	CATG	5 cut(s)	1009, 1156, 1366, 1576, 2024
FaiI	YATR	9 cut(s)	62, 548, 1007, 1154, 1364, 1511, 1574, 1894, 2022
FaqI	GGGAC	3 cut(s)	869, 921, 1927
FatI	CATG	5 cut(s)	1005, 1152, 1362, 1572, 2020
FauI	CCCGC	6 cut(s)	43, 491, 846, 913, 1588, 1966
FriOI	GRGCYC	6 cut(s)	273, 381, 972, 1185, 1288, 1381
FspBI	CTAG	3 cut(s)	359, 1104, 1721
GlaI	GCGC	8 cut(s)	155, 530, 985, 1092, 1219, 1270, 1747, 1804
GsaI	CCCAGC	1 cut(s)	1239
GsuI	CTGGAG	4 cut(s)	125, 269, 329, 644
HaeII	RGCGCY	1 cut(s)	1094
HaeIII	GGCC	6 cut(s)	56, 525, 960, 1286, 1415, 1727
HapII	CCGG	9 cut(s)	328, 767, 815, 826, 860, 876, 1186, 1673, 1874
HgaI	GACGC	8 cut(s)	786, 1159, 1214, 1495, 1577, 1822, 1854, 1929
HhaI	GCGC	8 cut(s)	156, 531, 986, 1093, 1220, 1271, 1748, 1805
Hin1I	GRCGYC	5 cut(s)	797, 1170, 1206, 1569, 1865
Hin1II	CATG	5 cut(s)	1009, 1156, 1366, 1576, 2024
Hin6I	GCGC	8 cut(s)	154, 529, 984, 1091, 1218, 1269, 1746, 1803
HinP1I	GCGC	8 cut(s)	154, 529, 984, 1091, 1218, 1269, 1746, 1803
HincII	GTYRAC	3 cut(s)	186, 1066, 1306
HindII	GTYRAC	3 cut(s)	186, 1066, 1306
HindIII	AAGCTT	1 cut(s)	1133
HinfI	GANTC	8 cut(s)	311, 353, 723, 896, 1189, 1321, 1954, 2017
HpaI	GTTAAC	1 cut(s)	1306
HpaII	CCGG	9 cut(s)	328, 767, 815, 826, 860, 876, 1186, 1673, 1874
HphI	GGTGA	8 cut(s)	373, 856, 1696, 1717, 1831, 1900, 1930, 2026
Hpy166II	GTNNAC	5 cut(s)	186, 1066, 1177, 1306, 1471
Hpy8I	GTNNAC	5 cut(s)	186, 1066, 1177, 1306, 1471
HpyAV	CCTTC	6 cut(s)	67, 311, 1423, 1622, 1772, 1927
HpyCH4III	ACNGT	7 cut(s)	737, 868, 1214, 1260, 1690, 1918, 2014
HpyCH4IV	ACGT	4 cut(s)	444, 884, 932, 1418
HpyCH4V	TGCA	5 cut(s)	639, 1224, 1300, 1471, 1654
HpyF10VI	GCNNNNNNNGC	9 cut(s)	477, 486, 564, 1097, 1226, 1577, 1733, 1745, 1862
HpyF3I	CTNAG	5 cut(s)	560, 966, 1146, 1403, 1958
HpySE526I	ACGT	4 cut(s)	444, 884, 932, 1418
Hsp92I	GRCGYC	5 cut(s)	797, 1170, 1206, 1569, 1865
Hsp92II	CATG	5 cut(s)	1009, 1156, 1366, 1576, 2024
HspAI	GCGC	8 cut(s)	154, 529, 984, 1091, 1218, 1269, 1746, 1803
KflI	GGGWCCC	1 cut(s)	856
Kpn2I	TCCGGA	1 cut(s)	1185
KpnI	GGTACC	1 cut(s)	1264
KroI	GCCGGC	1 cut(s)	766
KroNI	GCCGGC	1 cut(s)	768
KspAI	GTTAAC	1 cut(s)	1306
KspI	CCGCGG	2 cut(s)	1044, 1737
Kzo9I	GATC	9 cut(s)	174, 291, 508, 570, 834, 889, 912, 1359, 1841
Lsp1109I	GCAGC	6 cut(s)	234, 336, 498, 715, 1949, 1957
LweI	GCATC	6 cut(s)	616, 767, 779, 1124, 1398, 1544
MaeI	CTAG	3 cut(s)	359, 1104, 1721
MaeII	ACGT	4 cut(s)	444, 884, 932, 1418
MaeIII	GTNAC	5 cut(s)	862, 923, 1312, 1684, 1819
MalI	GATC	9 cut(s)	176, 293, 510, 572, 836, 891, 914, 1361, 1843
MbiI	CCGCTC	2 cut(s)	96, 139
MboI	GATC	9 cut(s)	174, 291, 508, 570, 834, 889, 912, 1359, 1841
MfeI	CAATTG	1 cut(s)	611
MflI	RGATCY	1 cut(s)	291
MluCI	AATT	8 cut(s)	611, 618, 803, 1588, 1698, 1757, 1824, 1859
MluI	ACGCGT	1 cut(s)	1504
MlyI	GAGTC	5 cut(s)	305, 362, 717, 905, 1198
MmeI	TCCRAC	6 cut(s)	102, 342, 700, 780, 1674, 1764
MroI	TCCGGA	1 cut(s)	1185
MroNI	GCCGGC	1 cut(s)	766
MroXI	GAANNNNTTC	2 cut(s)	368, 500
MseI	TTAA	7 cut(s)	434, 651, 789, 806, 1305, 1383, 1560
MslI	CAYNNNNRTG	2 cut(s)	1004, 1397
MspA1I	CMGCKG	2 cut(s)	1043, 1736
MspCI	CTTAAG	1 cut(s)	650
MspI	CCGG	9 cut(s)	328, 767, 815, 826, 860, 876, 1186, 1673, 1874
MspR9I	CCNGG	7 cut(s)	266, 662, 815, 860, 877, 956, 1265
MunI	CAATTG	1 cut(s)	611
Mva1269I	GAATGC	1 cut(s)	1441
MvaI	CCWGG	4 cut(s)	266, 662, 956, 1265
MwoI	GCNNNNNNNGC	9 cut(s)	477, 486, 564, 1097, 1226, 1577, 1733, 1745, 1862
NaeI	GCCGGC	1 cut(s)	768
NciI	CCSGG	3 cut(s)	815, 860, 877
NcoI	CCATGG	2 cut(s)	1152, 1572
NdeII	GATC	9 cut(s)	174, 291, 508, 570, 834, 889, 912, 1359, 1841
NgoMIV	GCCGGC	1 cut(s)	766
NlaIII	CATG	5 cut(s)	1009, 1156, 1366, 1576, 2024
NmeAIII	GCCGAG	1 cut(s)	26
NmuCI	GTSAC	5 cut(s)	862, 923, 1312, 1684, 1819
NruI	TCGCGA	1 cut(s)	624
NspV	TTCGAA	2 cut(s)	207, 1035
PaeR7I	CTCGAG	2 cut(s)	131, 533
PasI	CCCWGGG	1 cut(s)	955
PcsI	WCGNNNNNNNCGW	8 cut(s)	714, 723, 741, 1392, 1415, 1424, 1790, 2039
PctI	GAATGC	1 cut(s)	1441
PdiI	GCCGGC	1 cut(s)	768
PdmI	GAANNNNTTC	2 cut(s)	368, 500
PfeI	GAWTC	3 cut(s)	1321, 1954, 2017
Pfl23II	CGTACG	3 cut(s)	885, 1255, 1740
PflFI	GACNNNGTC	2 cut(s)	352, 860
PfoI	TCCNGGA	2 cut(s)	264, 660
Ple19I	CGATCG	1 cut(s)	892
PleI	GAGTC	5 cut(s)	305, 361, 717, 904, 1197
PmaCI	CACGTG	2 cut(s)	933, 1419
PmlI	CACGTG	2 cut(s)	933, 1419
PpsI	GAGTC	5 cut(s)	305, 361, 717, 904, 1197
Ppu21I	YACGTR	2 cut(s)	933, 1419
PpuMI	RGGWCCY	1 cut(s)	856
PshAI	GACNNNNGTC	1 cut(s)	1505
Psp124BI	GAGCTC	5 cut(s)	273, 381, 972, 1185, 1381
Psp5II	RGGWCCY	1 cut(s)	856
Psp6I	CCWGG	4 cut(s)	264, 660, 954, 1263
PspCI	CACGTG	2 cut(s)	933, 1419
PspEI	GGTNACC	1 cut(s)	862
PspFI	CCCAGC	1 cut(s)	1235
PspGI	CCWGG	4 cut(s)	264, 660, 954, 1263
PspLI	CGTACG	3 cut(s)	885, 1255, 1740
PspOMI	GGGCCC	1 cut(s)	1284
PspPI	GGNCC	8 cut(s)	54, 775, 856, 958, 1284, 1285, 1413, 1541
PspPPI	RGGWCCY	1 cut(s)	856
PspXI	VCTCGAGB	2 cut(s)	131, 533
PstI	CTGCAG	1 cut(s)	1302
PstNI	CAGNNNCTG	1 cut(s)	955
PsuI	RGATCY	1 cut(s)	291
PsyI	GACNNNGTC	2 cut(s)	352, 860
PvuI	CGATCG	1 cut(s)	892
RruI	TCGCGA	1 cut(s)	624
RsaI	GTAC	6 cut(s)	887, 1257, 1262, 1478, 1742, 2029
RsaNI	GTAC	6 cut(s)	886, 1256, 1261, 1477, 1741, 2028
RseI	CAYNNNNRTG	2 cut(s)	1004, 1397
SacI	GAGCTC	5 cut(s)	273, 381, 972, 1185, 1381
SacII	CCGCGG	2 cut(s)	1044, 1737
SaqAI	TTAA	7 cut(s)	434, 651, 789, 806, 1305, 1383, 1560
Sau3AI	GATC	9 cut(s)	174, 291, 508, 570, 834, 889, 912, 1359, 1841
Sau96I	GGNCC	8 cut(s)	54, 775, 856, 958, 1284, 1285, 1413, 1541
SbfI	CCTGCAGG	1 cut(s)	1302
SchI	GAGTC	5 cut(s)	305, 362, 717, 905, 1198
ScrFI	CCNGG	7 cut(s)	266, 662, 815, 860, 877, 956, 1265
SdaI	CCTGCAGG	1 cut(s)	1302
SfaNI	GCATC	6 cut(s)	616, 767, 779, 1124, 1398, 1544
SfcI	CTRYAG	1 cut(s)	1298
Sfr274I	CTCGAG	2 cut(s)	131, 533
Sfr303I	CCGCGG	2 cut(s)	1044, 1737
SfuI	TTCGAA	2 cut(s)	207, 1035
SgrBI	CCGCGG	2 cut(s)	1044, 1737
SinI	GGWCC	3 cut(s)	775, 856, 1541
SlaI	CTCGAG	2 cut(s)	131, 533
SmiMI	CAYNNNNRTG	2 cut(s)	1004, 1397
SmlI	CTYRAG	3 cut(s)	131, 533, 650
SmoI	CTYRAG	3 cut(s)	131, 533, 650
SpeI	ACTAGT	1 cut(s)	1720
Sse8387I	CCTGCAGG	1 cut(s)	1302
Sse9I	AATT	8 cut(s)	611, 618, 803, 1588, 1698, 1757, 1824, 1859
SspMI	CTAG	3 cut(s)	359, 1104, 1721
SstI	GAGCTC	5 cut(s)	273, 381, 972, 1185, 1381
StyD4I	CCNGG	7 cut(s)	264, 660, 813, 858, 875, 954, 1263
StyI	CCWWGG	2 cut(s)	1152, 1572
TaaI	ACNGT	7 cut(s)	737, 868, 1214, 1260, 1690, 1918, 2014
TaiI	ACGT	4 cut(s)	447, 887, 935, 1421
TaqII	GACCGA	1 cut(s)	365
TasI	AATT	8 cut(s)	611, 618, 803, 1588, 1698, 1757, 1824, 1859
TatI	WGTACW	1 cut(s)	2027
TfiI	GAWTC	3 cut(s)	1321, 1954, 2017
Tru1I	TTAA	7 cut(s)	434, 651, 789, 806, 1305, 1383, 1560
Tru9I	TTAA	7 cut(s)	434, 651, 789, 806, 1305, 1383, 1560
TscAI	CASTG	4 cut(s)	482, 970, 1617, 1990
TseFI	GTSAC	5 cut(s)	862, 923, 1312, 1684, 1819
TseI	GCWGC	6 cut(s)	222, 324, 486, 703, 1937, 1970
Tsp45I	GTSAC	5 cut(s)	862, 923, 1312, 1684, 1819
TspDTI	ATGAA	1 cut(s)	49
TspGWI	ACGGA	6 cut(s)	160, 698, 1217, 1385, 1389, 1566
TspRI	CASTG	4 cut(s)	482, 970, 1617, 1990
Tth111I	GACNNNGTC	2 cut(s)	352, 860
Vha464I	CTTAAG	1 cut(s)	650
VneI	GTGCAC	1 cut(s)	1469
VpaK11BI	GGWCC	3 cut(s)	775, 856, 1541
XapI	RAATTY	2 cut(s)	618, 1588
XhoI	CTCGAG	2 cut(s)	131, 533
XmnI	GAANNNNTTC	2 cut(s)	368, 500
XspI	CTAG	3 cut(s)	359, 1104, 1721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.