Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0014160

Physical Location & Seq

Genomic Coordinates Reverse (-)

8249318 .. 8251358

Gene Structure 2041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G008860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2010 bp

ATGGCGGTTTCTCCACAAGCATTCCCGCCCAGAAAGCGGCGGCCATCTGCCGGAGCCTTCATGTCTCCCAAATTCTCCGACCAGAGCCTCCTCCGCTCTCTCCTCCACCTCTGCCAGGAAATATCCACCCTCGAATCCCGCAGCTTCCTCCTCAGACGAACCACCCTATCCATGACTCGAAAAGCCAAGCTTCTTGCCTTCCTCTTCGAAGACCTAGTTCGATCATCAATCACCTACCTCTCTCCCTCCGCTCTCTTATGTTTCCAAGAAATGTATATACTGCTGCAGAGAATCCAAACCCTCATCGAAGACTCTTCTCACGGCAGCAAGATGTGGCTTCTCATCCAAAACGAGTCCCTCGCCAACAGCTTCCACGAGCTGACTCTTGATCTATCCACTTTGCTCGATATTCTCCCCGTCAAGGAGCTTAACCTAAACGACGACGTCGAGGAAGTCGTCGCCTTGCTCCGCGCACAGTGCGCACGAAGCAAGGACGCTTTTGTTGATCCCAAGGATGATAATCTCCGCCTCGAAGTCTGCTCCATGCTCGATCGCCTCAAAAAGGAAATCATTCCAGACCACTCCAAGCTCTCCGAGATTTTTGTCCAGTTAGGAATTCTAGACTCTTCCAAATGTAAAGAAGAGCTAGAGTCTCTCCAAGACGAGTTTCAGAACCAAGCCGACGACAAGTCCAAATCCCAATTGGTTTCCCTCATCGGCCTCGTTCGCTACGCCAAATGTGTCCTCTTCGGCGCTTCAACTCCAAGTTCCGATCTCACTCGCCTGAAATCTTCGTCGGAGCTAAACTTCCCGCTTATGCGGGACCCGGTCGCCGTGGCCACCGGTCAGACATACGATCGTGAGTCCATCAAGCTGTGGATCGAATCAGGACACAATACGTGTCCCAAGACAGGTCAGACGCTGGCCCACACGAACTTGATACCCAACCGCGCTTTGAAAAATCTTATCGCCATGTGGTGCCGCGAGCAGCGAATCCCTTTCGAGCATGCCGAGAATAAGGATAAAGTCAGCGCCGTCAAGAAGAACAAGGCGGCGTTAGAAGCCACCAGGATGACCGCGTCGTTTTTGGTCAACAAACTCTCCCTCGCCCAGTCAATCGAGGCTGCCAACGGCGTCGTTTACGAGCTTCGTAGCCTGGCCAAGACTGATTCGGACTGCCGAGCCTGCATTGCCGAAGCTGGAGCGATTCCTTTGCTCGTACGTCATTTAGGCTCGGACGCCGGTCGGGACCACCCGAACCTACAGGTGAACGCCGTCACGACGATCCTCAACCTCTCAATACTCGAAGCCAACAAAGCAAGGATCATGGACACTGACGGAGCCTTAAACGGCGTCATTGAGGTGCTTCGTTCGGGTGCCACGTGGGAGGCTAAAGGGAACGCGGCGGCTACGATATTCAGCTTATCAGGTGTGCAAGCGTACAGGAAGAAACTAGGGAGGAAGGCACGTGTCATAAAGGCATTGGTGGACTTGGCCAGGGAGGGACCCGGGTTTTCCAAAAGGGACGCCATGGTGGCGATATTGAATTTGGCGGGAGAAAGAGAGGCGGTGGCGAAGTTGGTGGAAAGCGGGGTGGTGGAGATGACGATGGAAGTAATGGAGGGGCTACCGGAAGAGGCGGTGACTGTGTTGGAAGTGGTGGTGAGAGGAGGAGGGATGGGGGCAATTGCGGCGGCGTATGGGGCGATCAGGCATTTGGGAGTGGTGTTGAGAGAAGGGTCGGATAGGGCGAGGGAGAGCGCGGCGGCGACACTTGTGACAATTTGTAGAAAAGGGGGGTCCGAAATGGTGGCGGAGTTGGTGTCGGTTTCGGGGATAGAGAGGGTAATATGGGAATTGATGGGGACGGGGACGGTGAGGGCCAGGAGGAAAGCGGCGTCGTTGTTGAGGATCCTGAGGAGATGGGCGGCCGGATTGGAGGGTGATCAAGTAGTGGAAGGGTATTCGACTATTGTGAGTTCATCAACGACAGCAATGGTGTCTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0010033 GO:0010200 GO:0010243 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

669

Amino Acids

73.16

Weight (kDa)

8.5

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUB10_N	PF25368	52 - 164	5e-11	PUB10-like, N-terminal domain
U-box	PF04564	268 - 331	1.4e-15	U-box domain
ARM_PUB	PF25598	367 - 641	2.4e-14	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01830
fragaria_vesca	FvH4_5g29050
malus_domestica	MD04G1172400.v1.1 MD12G1185600.v1.1
prunus_persica	Prupe.6G290800_v2.0.a1
pyrus_communis	pycom04g15230 pycom12g17420
rosa_chinensis	RchiOBHm_Chr3g0460861
rosa_laevigata	RLG00000024973
rosa_multiflora	Rmu_sc0009011.1_g000007
rosa_roxburghii	Rroxscaffold_6G00419150
rosa_rugosa	Rorug03G0047000
rosa_samantha	Rh3AG104100 Rh3BG107800 Rh3CG109600 Rh3DG109600
rosa_wichuraiana	Rw3G008860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	447
Acc16I	TGCGCA	1 cut(s)	481
AccB1I	GGYRCC	2 cut(s)	978, 1376
AccBSI	CCGCTC	2 cut(s)	96, 251
AccII	CGCG	6 cut(s)	471, 951, 984, 1079, 1403, 1763
AclWI	GGATC	6 cut(s)	500, 887, 1279, 1331, 1906, 1919
AcoI	YGGCCR	5 cut(s)	41, 837, 1158, 1494, 1929
AcsI	RAATTY	3 cut(s)	71, 615, 1546
AcvI	CACGTG	2 cut(s)	1383, 1469
AcyI	GRCGYC	6 cut(s)	444, 1134, 1239, 1353, 1527, 1898
AfaI	GTAC	2 cut(s)	1221, 1442
AfiI	CCNNNNNNNGG	6 cut(s)	36, 50, 115, 421, 562, 911
AflIII	ACRYGT	2 cut(s)	899, 1468
AgeI	ACCGGT	1 cut(s)	842
AgsI	TTSAA	3 cut(s)	759, 958, 1546
AhdI	GACNNNNNGTC	1 cut(s)	688
AjnI	CCWGG	5 cut(s)	114, 1067, 1155, 1496, 1883
AjuI	GAANNNNNNNTTGG	2 cut(s)	651, 683
Alw26I	GTCTC	2 cut(s)	69, 657
AlwI	GGATC	6 cut(s)	500, 887, 1279, 1331, 1906, 1919
AlwNI	CAGNNNCTG	1 cut(s)	922
Ama87I	CYCGRG	1 cut(s)	1508
AoxI	GGCC	8 cut(s)	41, 718, 837, 924, 1158, 1494, 1881, 1929
ApeKI	GCWGC	5 cut(s)	141, 283, 324, 988, 1124
ApoI	RAATTY	3 cut(s)	71, 615, 1546
AsiGI	ACCGGT	1 cut(s)	842
Asp700I	GAANNNNTTC	1 cut(s)	570
AspLEI	GCGC	6 cut(s)	473, 482, 755, 953, 1034, 1763
AspS9I	GGNCC	6 cut(s)	823, 925, 1249, 1505, 1800, 1881
AsuC2I	CCSGG	3 cut(s)	827, 1509, 1510
AsuHPI	GGTGA	6 cut(s)	223, 1279, 1654, 1675, 1888, 1955
AsuII	TTCGAA	1 cut(s)	207
AvaI	CYCGRG	1 cut(s)	1508
AvaII	GGWCC	4 cut(s)	823, 1249, 1505, 1800
AxyI	CCTNAGG	1 cut(s)	1916
BalI	TGGCCA	3 cut(s)	839, 1160, 1496
BamHI	GGATCC	1 cut(s)	1911
BanI	GGYRCC	2 cut(s)	978, 1376
BauI	CACGAG	1 cut(s)	374
BbrPI	CACGTG	2 cut(s)	1383, 1469
BbsI	GAAGAC	2 cut(s)	216, 315
BbvI	GCAGC	5 cut(s)	153, 270, 336, 1000, 1111
BccI	CCATC	6 cut(s)	52, 875, 1603, 1672, 1855, 1917
BceAI	ACGGC	6 cut(s)	337, 818, 1019, 1147, 1259, 1366
BcgI	CGANNNNNNTGC	2 cut(s)	1195, 1229
BciT130I	CCWGG	5 cut(s)	116, 1069, 1157, 1498, 1885
BclI	TGATCA	1 cut(s)	1945
BcnI	CCSGG	3 cut(s)	827, 1509, 1510
BcoDI	GTCTC	2 cut(s)	69, 657
BfaI	CTAG	4 cut(s)	215, 620, 647, 1454
BfmI	CTRYAG	2 cut(s)	284, 1262
BfoI	RGCGCY	2 cut(s)	756, 1035
BglI	GCCNNNNNGGC	1 cut(s)	1535
Bme1390I	CCNGG	8 cut(s)	116, 827, 1069, 1157, 1498, 1509, 1510, 1885
Bme18I	GGWCC	4 cut(s)	823, 1249, 1505, 1800
BmeRI	GACNNNNNGTC	1 cut(s)	688
BmeT110I	CYCGRG	1 cut(s)	1508
BmgT120I	GGNCC	6 cut(s)	823, 925, 1249, 1505, 1800, 1881
BmrFI	CCNGG	8 cut(s)	116, 827, 1069, 1157, 1498, 1509, 1510, 1885
BmrI	ACTGGG	1 cut(s)	1105
BmuI	ACTGGG	1 cut(s)	1105
BoxI	GACNNNNGTC	1 cut(s)	1242
BpiI	GAAGAC	2 cut(s)	216, 315
BpmI	CTGGAG	1 cut(s)	1221
Bpu14I	TTCGAA	1 cut(s)	207
BpuMI	CCSGG	3 cut(s)	827, 1509, 1510
BsaAI	YACGTR	3 cut(s)	900, 1383, 1469
BsaBI	GATNNNNATC	1 cut(s)	519
BsaHI	GRCGYC	6 cut(s)	444, 1134, 1239, 1353, 1527, 1898
BsaJI	CCNNGG	5 cut(s)	510, 834, 1497, 1508, 1530
BsaWI	WCCGGW	2 cut(s)	842, 1630
BsaXI	ACNNNNNCTCC	4 cut(s)	1085, 1115, 1808, 1838
Bsc4I	CCNNNNNNNGG	6 cut(s)	36, 50, 115, 421, 562, 911
Bse118I	RCCGGY	2 cut(s)	842, 1241
Bse1I	ACTGG	2 cut(s)	607, 1111
Bse21I	CCTNAGG	1 cut(s)	1916
Bse3DI	GCAATG	2 cut(s)	1188, 2001
Bse8I	GATNNNNATC	1 cut(s)	519
BseBI	CCWGG	5 cut(s)	116, 1069, 1157, 1498, 1885
BseDI	CCNNGG	5 cut(s)	510, 834, 1497, 1508, 1530
BseGI	GGATG	4 cut(s)	342, 520, 1077, 1683
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	6 cut(s)	36, 50, 115, 421, 562, 911
BseMI	GCAATG	2 cut(s)	1188, 2001
BseMII	CTCAG	2 cut(s)	166, 1907
BseNI	ACTGG	2 cut(s)	607, 1111
BseRI	GAGGAG	6 cut(s)	80, 92, 140, 1683, 1686, 1933
BseX3I	CGGCCG	1 cut(s)	1929
BseXI	GCAGC	5 cut(s)	153, 270, 336, 1000, 1111
Bsh1236I	CGCG	6 cut(s)	471, 951, 984, 1079, 1403, 1763
Bsh1285I	CGRYCG	5 cut(s)	553, 831, 859, 1246, 1932
BshFI	GGCC	8 cut(s)	43, 720, 839, 926, 1160, 1496, 1883, 1931
BshNI	GGYRCC	2 cut(s)	978, 1376
BshTI	ACCGGT	1 cut(s)	842
BsiEI	CGRYCG	5 cut(s)	553, 831, 859, 1246, 1932
BsiHKCI	CYCGRG	1 cut(s)	1508
BsiSI	CCGG	7 cut(s)	51, 827, 843, 1242, 1509, 1631, 1932
BsiWI	CGTACG	1 cut(s)	1219
BslFI	GGGAC	8 cut(s)	340, 836, 888, 1262, 1518, 1538, 1879, 1885
BslI	CCNNNNNNNGG	6 cut(s)	36, 50, 115, 421, 562, 911
BsmAI	GTCTC	2 cut(s)	69, 657
BsmFI	GGGAC	8 cut(s)	340, 836, 888, 1262, 1518, 1538, 1879, 1885
BsmI	GAATGC	1 cut(s)	20
BsnI	GGCC	8 cut(s)	43, 720, 839, 926, 1160, 1496, 1883, 1931
BsoBI	CYCGRG	1 cut(s)	1508
Bsp119I	TTCGAA	1 cut(s)	207
Bsp19I	CCATGG	1 cut(s)	1530
BspANI	GGCC	8 cut(s)	43, 720, 839, 926, 1160, 1496, 1883, 1931
BspCNI	CTCAG	2 cut(s)	165, 1908
BspFNI	CGCG	6 cut(s)	471, 951, 984, 1079, 1403, 1763
BspMAI	CTGCAG	1 cut(s)	288
BspPI	GGATC	6 cut(s)	500, 887, 1279, 1331, 1906, 1919
BspQI	GCTCTTC	1 cut(s)	636
BspT104I	TTCGAA	1 cut(s)	207
BspT107I	GGYRCC	2 cut(s)	978, 1376
BsrBI	CCGCTC	2 cut(s)	96, 251
BsrDI	GCAATG	2 cut(s)	1188, 2001
BsrFI	RCCGGY	2 cut(s)	842, 1241
BsrI	ACTGG	2 cut(s)	607, 1111
BssAI	RCCGGY	2 cut(s)	842, 1241
BssECI	CCNNGG	5 cut(s)	510, 834, 1497, 1508, 1530
BssNI	GRCGYC	6 cut(s)	444, 1134, 1239, 1353, 1527, 1898
BssSI	CACGAG	1 cut(s)	374
BssT1I	CCWWGG	2 cut(s)	510, 1530
Bst2BI	CACGAG	1 cut(s)	374
Bst2UI	CCWGG	5 cut(s)	116, 1069, 1157, 1498, 1885
Bst4CI	ACNGT	3 cut(s)	477, 1648, 1876
Bst6I	CTCTTC	6 cut(s)	209, 319, 631, 636, 752, 1629
BstACI	GRCGYC	6 cut(s)	444, 1134, 1239, 1353, 1527, 1898
BstBAI	YACGTR	3 cut(s)	900, 1383, 1469
BstBI	TTCGAA	1 cut(s)	207
BstC8I	GCNNGC	5 cut(s)	924, 986, 1008, 1186, 1437
BstDEI	CTNAG	2 cut(s)	152, 1916
BstDSI	CCRYGG	2 cut(s)	834, 1530
BstENI	CCTNNNNNAGG	2 cut(s)	113, 560
BstF5I	GGATG	4 cut(s)	342, 520, 1077, 1683
BstFNI	CGCG	6 cut(s)	471, 951, 984, 1079, 1403, 1763
BstH2I	RGCGCY	2 cut(s)	756, 1035
BstHHI	GCGC	6 cut(s)	473, 482, 755, 953, 1034, 1763
BstMAI	GTCTC	2 cut(s)	69, 657
BstMCI	CGRYCG	5 cut(s)	553, 831, 859, 1246, 1932
BstNI	CCWGG	5 cut(s)	116, 1069, 1157, 1498, 1885
BstNSI	RCATGY	1 cut(s)	1010
BstPAI	GACNNNNGTC	1 cut(s)	1242
BstSCI	CCNGG	8 cut(s)	114, 825, 1067, 1155, 1496, 1507, 1508, 1883
BstSFI	CTRYAG	2 cut(s)	284, 1262
BstUI	CGCG	6 cut(s)	471, 951, 984, 1079, 1403, 1763
BstV1I	GCAGC	5 cut(s)	153, 270, 336, 1000, 1111
BstV2I	GAAGAC	2 cut(s)	216, 315
BstX2I	RGATCY	1 cut(s)	1911
BstYI	RGATCY	1 cut(s)	1911
BstZI	CGGCCG	1 cut(s)	1929
Bsu36I	CCTNAGG	1 cut(s)	1916
BsuRI	GGCC	8 cut(s)	43, 720, 839, 926, 1160, 1496, 1883, 1931
BtgI	CCRYGG	2 cut(s)	834, 1530
BtsCI	GGATG	4 cut(s)	342, 520, 1077, 1683
BtsIMutI	CAGTG	2 cut(s)	482, 1332
Cac8I	GCNNGC	5 cut(s)	924, 986, 1008, 1186, 1437
CaiI	CAGNNNCTG	1 cut(s)	922
CfoI	GCGC	6 cut(s)	473, 482, 755, 953, 1034, 1763
Cfr10I	RCCGGY	2 cut(s)	842, 1241
Cfr13I	GGNCC	6 cut(s)	823, 925, 1249, 1505, 1800, 1881
Cfr9I	CCCGGG	1 cut(s)	1508
CseI	GACGC	8 cut(s)	503, 928, 1068, 1123, 1247, 1342, 1535, 1887
Csp6I	GTAC	2 cut(s)	1220, 1441
CspAI	ACCGGT	1 cut(s)	842
CviAII	CATG	7 cut(s)	61, 172, 544, 973, 1007, 1327, 1531
CviQI	GTAC	2 cut(s)	1220, 1441
DdeI	CTNAG	2 cut(s)	152, 1916
DriI	GACNNNNNGTC	1 cut(s)	688
EaeI	YGGCCR	5 cut(s)	41, 837, 1158, 1494, 1929
EagI	CGGCCG	1 cut(s)	1929
Eam1104I	CTCTTC	6 cut(s)	209, 319, 631, 636, 752, 1629
Eam1105I	GACNNNNNGTC	1 cut(s)	688
EarI	CTCTTC	6 cut(s)	209, 319, 631, 636, 752, 1629
EciI	GGCGGA	2 cut(s)	515, 1829
EclXI	CGGCCG	1 cut(s)	1929
Eco130I	CCWWGG	2 cut(s)	510, 1530
Eco47I	GGWCC	4 cut(s)	823, 1249, 1505, 1800
Eco52I	CGGCCG	1 cut(s)	1929
Eco72I	CACGTG	2 cut(s)	1383, 1469
Eco81I	CCTNAGG	1 cut(s)	1916
Eco88I	CYCGRG	1 cut(s)	1508
EcoNI	CCTNNNNNAGG	2 cut(s)	113, 560
EcoO109I	RGGNCCY	2 cut(s)	823, 1505
EcoRI	GAATTC	1 cut(s)	615
EcoRII	CCWGG	5 cut(s)	114, 1067, 1155, 1496, 1883
EcoT14I	CCWWGG	2 cut(s)	510, 1530
ErhI	CCWWGG	2 cut(s)	510, 1530
FaeI	CATG	7 cut(s)	64, 175, 547, 976, 1010, 1330, 1534
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FaqI	GGGAC	8 cut(s)	340, 836, 888, 1262, 1518, 1538, 1879, 1885
FatI	CATG	7 cut(s)	60, 171, 543, 972, 1006, 1326, 1530
FauI	CCCGC	6 cut(s)	33, 146, 813, 819, 1546, 1583
FbaI	TGATCA	1 cut(s)	1945
FokI	GGATG	4 cut(s)	329, 527, 1084, 1690
FspAI	RTGCGCAY	1 cut(s)	481
FspBI	CTAG	4 cut(s)	215, 620, 647, 1454
FspI	TGCGCA	1 cut(s)	481
GlaI	GCGC	6 cut(s)	472, 481, 754, 952, 1033, 1762
GsuI	CTGGAG	1 cut(s)	1221
HaeII	RGCGCY	2 cut(s)	756, 1035
HaeIII	GGCC	8 cut(s)	43, 720, 839, 926, 1160, 1496, 1883, 1931
HapII	CCGG	7 cut(s)	51, 827, 843, 1242, 1509, 1631, 1932
HgaI	GACGC	8 cut(s)	503, 928, 1068, 1123, 1247, 1342, 1535, 1887
HhaI	GCGC	6 cut(s)	473, 482, 755, 953, 1034, 1763
Hin1I	GRCGYC	6 cut(s)	444, 1134, 1239, 1353, 1527, 1898
Hin1II	CATG	7 cut(s)	64, 175, 547, 976, 1010, 1330, 1534
Hin6I	GCGC	6 cut(s)	471, 480, 753, 951, 1032, 1761
HinP1I	GCGC	6 cut(s)	471, 480, 753, 951, 1032, 1761
HincII	GTYRAC	1 cut(s)	1093
HindII	GTYRAC	1 cut(s)	1093
HindIII	AAGCTT	1 cut(s)	188
HpaII	CCGG	7 cut(s)	51, 827, 843, 1242, 1509, 1631, 1932
HphI	GGTGA	6 cut(s)	223, 1279, 1654, 1675, 1888, 1955
Hpy166II	GTNNAC	4 cut(s)	1093, 1141, 1270, 1489
Hpy188III	TCNNGA	9 cut(s)	386, 575, 620, 860, 888, 1039, 1247, 1279, 1915
Hpy8I	GTNNAC	4 cut(s)	1093, 1141, 1270, 1489
HpyAV	CCTTC	5 cut(s)	67, 208, 1456, 1730, 1952
HpyCH4III	ACNGT	3 cut(s)	477, 1648, 1876
HpyCH4IV	ACGT	5 cut(s)	444, 899, 1222, 1382, 1468
HpyCH4V	TGCA	3 cut(s)	286, 1188, 1435
HpyF3I	CTNAG	2 cut(s)	152, 1916
HpySE526I	ACGT	5 cut(s)	444, 899, 1222, 1382, 1468
Hsp92I	GRCGYC	6 cut(s)	444, 1134, 1239, 1353, 1527, 1898
Hsp92II	CATG	7 cut(s)	64, 175, 547, 976, 1010, 1330, 1534
HspAI	GCGC	6 cut(s)	471, 480, 753, 951, 1032, 1761
KflI	GGGWCCC	2 cut(s)	823, 1505
Ksp22I	TGATCA	1 cut(s)	1945
LguI	GCTCTTC	1 cut(s)	636
LmnI	GCTCC	7 cut(s)	53, 424, 471, 545, 799, 1202, 1340
Lsp1109I	GCAGC	5 cut(s)	153, 270, 336, 1000, 1111
MaeI	CTAG	4 cut(s)	215, 620, 647, 1454
MaeII	ACGT	5 cut(s)	444, 899, 1222, 1382, 1468
MaeIII	GTNAC	3 cut(s)	1276, 1642, 1777
MbiI	CCGCTC	2 cut(s)	96, 251
MfeI	CAATTG	2 cut(s)	701, 1686
MflI	RGATCY	1 cut(s)	1911
MlsI	TGGCCA	3 cut(s)	839, 1160, 1496
MluCI	AATT	7 cut(s)	71, 615, 701, 1546, 1686, 1782, 1856
MluNI	TGGCCA	3 cut(s)	839, 1160, 1496
MlyI	GAGTC	7 cut(s)	169, 305, 362, 376, 617, 659, 872
MmeI	TCCRAC	4 cut(s)	102, 777, 1632, 1722
Mox20I	TGGCCA	3 cut(s)	839, 1160, 1496
MroXI	GAANNNNTTC	1 cut(s)	570
MscI	TGGCCA	3 cut(s)	839, 1160, 1496
MseI	TTAA	2 cut(s)	429, 1346
MslI	CAYNNNNRTG	2 cut(s)	1070, 1361
Msp20I	TGGCCA	3 cut(s)	839, 1160, 1496
MspI	CCGG	7 cut(s)	51, 827, 843, 1242, 1509, 1631, 1932
MspR9I	CCNGG	8 cut(s)	116, 827, 1069, 1157, 1498, 1509, 1510, 1885
MunI	CAATTG	2 cut(s)	701, 1686
Mva1269I	GAATGC	1 cut(s)	20
MvaI	CCWGG	5 cut(s)	116, 1069, 1157, 1498, 1885
MvnI	CGCG	6 cut(s)	471, 951, 984, 1079, 1403, 1763
NciI	CCSGG	3 cut(s)	827, 1509, 1510
NcoI	CCATGG	1 cut(s)	1530
NlaIII	CATG	7 cut(s)	64, 175, 547, 976, 1010, 1330, 1534
NmeAIII	GCCGAG	2 cut(s)	1036, 1205
NmuCI	GTSAC	3 cut(s)	1276, 1642, 1777
NsbI	TGCGCA	1 cut(s)	481
NspI	RCATGY	1 cut(s)	1010
NspV	TTCGAA	1 cut(s)	207
PaeI	GCATGC	1 cut(s)	1010
PciSI	GCTCTTC	1 cut(s)	636
PcsI	WCGNNNNNNNCGW	5 cut(s)	444, 453, 1008, 1379, 1748
PctI	GAATGC	1 cut(s)	20
PdmI	GAANNNNTTC	1 cut(s)	570
PfeI	GAWTC	6 cut(s)	134, 291, 884, 993, 1169, 1207
Pfl23II	CGTACG	1 cut(s)	1219
PflFI	GACNNNGTC	3 cut(s)	443, 827, 1078
PinAI	ACCGGT	1 cut(s)	842
Ple19I	CGATCG	2 cut(s)	553, 859
PleI	GAGTC	7 cut(s)	169, 305, 361, 376, 617, 658, 871
PmaCI	CACGTG	2 cut(s)	1383, 1469
PmlI	CACGTG	2 cut(s)	1383, 1469
PpsI	GAGTC	7 cut(s)	169, 305, 361, 376, 617, 658, 871
Ppu21I	YACGTR	3 cut(s)	900, 1383, 1469
PpuMI	RGGWCCY	2 cut(s)	823, 1505
PshAI	GACNNNNGTC	1 cut(s)	1242
Psp5II	RGGWCCY	2 cut(s)	823, 1505
Psp6I	CCWGG	5 cut(s)	114, 1067, 1155, 1496, 1883
PspCI	CACGTG	2 cut(s)	1383, 1469
PspGI	CCWGG	5 cut(s)	114, 1067, 1155, 1496, 1883
PspLI	CGTACG	1 cut(s)	1219
PspPI	GGNCC	6 cut(s)	823, 925, 1249, 1505, 1800, 1881
PspPPI	RGGWCCY	2 cut(s)	823, 1505
PstI	CTGCAG	1 cut(s)	288
PstNI	CAGNNNCTG	1 cut(s)	922
PsuI	RGATCY	1 cut(s)	1911
PsyI	GACNNNGTC	3 cut(s)	443, 827, 1078
PvuI	CGATCG	2 cut(s)	553, 859
RsaI	GTAC	2 cut(s)	1221, 1442
RsaNI	GTAC	2 cut(s)	1220, 1441
RseI	CAYNNNNRTG	2 cut(s)	1070, 1361
SapI	GCTCTTC	1 cut(s)	636
SaqAI	TTAA	2 cut(s)	429, 1346
Sau96I	GGNCC	6 cut(s)	823, 925, 1249, 1505, 1800, 1881
SchI	GAGTC	7 cut(s)	169, 305, 362, 376, 617, 659, 872
ScrFI	CCNGG	8 cut(s)	116, 827, 1069, 1157, 1498, 1509, 1510, 1885
SfcI	CTRYAG	2 cut(s)	284, 1262
SfuI	TTCGAA	1 cut(s)	207
SinI	GGWCC	4 cut(s)	823, 1249, 1505, 1800
SmaI	CCCGGG	1 cut(s)	1510
SmiMI	CAYNNNNRTG	2 cut(s)	1070, 1361
SphI	GCATGC	1 cut(s)	1010
Sse9I	AATT	7 cut(s)	71, 615, 701, 1546, 1686, 1782, 1856
SspMI	CTAG	4 cut(s)	215, 620, 647, 1454
StyD4I	CCNGG	8 cut(s)	114, 825, 1067, 1155, 1496, 1507, 1508, 1883
StyI	CCWWGG	2 cut(s)	510, 1530
TaaI	ACNGT	3 cut(s)	477, 1648, 1876
TaiI	ACGT	5 cut(s)	447, 902, 1225, 1385, 1471
TasI	AATT	7 cut(s)	71, 615, 701, 1546, 1686, 1782, 1856
TfiI	GAWTC	6 cut(s)	134, 291, 884, 993, 1169, 1207
Tru1I	TTAA	2 cut(s)	429, 1346
Tru9I	TTAA	2 cut(s)	429, 1346
TscAI	CASTG	2 cut(s)	482, 1339
TseFI	GTSAC	3 cut(s)	1276, 1642, 1777
TseI	GCWGC	5 cut(s)	141, 283, 324, 988, 1124
Tsp45I	GTSAC	3 cut(s)	1276, 1642, 1777
TspDTI	ATGAA	2 cut(s)	49, 1971
TspGWI	ACGGA	1 cut(s)	1353
TspMI	CCCGGG	1 cut(s)	1508
TspRI	CASTG	2 cut(s)	482, 1339
Tth111I	GACNNNGTC	3 cut(s)	443, 827, 1078
VpaK11BI	GGWCC	4 cut(s)	823, 1249, 1505, 1800
XagI	CCTNNNNNAGG	2 cut(s)	113, 560
XapI	RAATTY	3 cut(s)	71, 615, 1546
XbaI	TCTAGA	1 cut(s)	619
XceI	RCATGY	1 cut(s)	1010
XcmI	CCANNNNNNNNNTGG	1 cut(s)	700
XmaI	CCCGGG	1 cut(s)	1508
XmnI	GAANNNNTTC	1 cut(s)	570
XspI	CTAG	4 cut(s)	215, 620, 647, 1454
ZraI	GACGTC	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.