Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0014160

Physical Location & Seq

Genomic Coordinates Forward (+)

40655098 .. 40656966

Gene Structure 1869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00419150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1869 bp

ATGGCGGTTTCTCCACAAGCATTCCCGCCCAGAAAGCGGCGGCCATCTGCCGGAGCCTTCATGTCTCCCAAACTCTCCGACCAGAGCCTCCTCCGCTCTCTCCTCCACCTCTGCCAGGAAATCTCCTCCCTCGAATCCCGCAGCTTCCTCCTCAGACGAACCACCCTATCCATGACTCGAAAAGCCAAGCTTCTTGCCTTCCTCTTCGAAGACCTAGTTCGATCATCAATCACCTACCTCTCTCCCTCCGCTCTCTTATGTTTCCAAGAAATGTACATACTGCTGCAGAGAATCCAAACCCTCATCGAAGACTCTTCTCACGGCAGCAAGATGTGGCTTCTCATCCAAAACGAGTCCCTCGCTAACAGCTTCCACGAGCTGACTCTTGATCTATCCACTTTGCTCGATATTCTCCCCATCAAGGAGCTTAACCTAAACGACGACGTCGAGGAAGTCGTCGCCTTGCTCCGCGCACAGTGCGCGCGAACCAAGGACGCTTTTGTTGATCCCAAGGATGATAATCTCCGCCTCGAAGTCTGCTCCATGCTCGATCGCCTCAAAAAGGAAATCATTCCAGACCACTCCAAGCTCTCCGAGATTTTTGTCCTGTTAGGAATTCTAGACTCTTCCAAATGTAAAGAGGAGCTAGAGTCTCTCCAAGAGGAGTTTCAGAACCAAGCCGACGACAAGTCCAAATCCCAATTGGTTTCCCTCATCGGCCTCGTTCGCTACGCCAAATGTGTCCTCTTCGGCGCTTCAACTCCAAGTTCCGATCTCACTCGCCTGAAATCTTCCTCGGAGCTAAACTTCCCGGCGGACTTCCGGTGTCCGATCAGCCTAGAGCTTATGCGGGACCCGGTCGCCGTGGCCACCGGTCAGACATACGATCGTGAGTCCATCAAGCTGTGGATCGAATCAGGACACAACACGTGTCCCAAGACAGGTCAGACGCTGGCCCACACGAACTTGATACCCAACCGCGCTTTGAAAAATCTTATCGCCATGTGGTGCCGCGAACAGCGGATCCCTTTCGAGCACACCGAGAATAAGGATAAAGTCAGCGCCGTCAAGAAGAACAAGGCGGCTTTAGAAGCCACCAGGATGACGGCGTCGTTTTTGGTCAACAAACTCTCCCTCGCCCAGTCAATCGAGGCTGCCAACGGCGTCGTTTACGAGCTTCGTAGTCTGGCCAAGACTGATTCGGACTGCCGAGCCTGCATTGCCGAAGCTGGAGCGATTCCTTTGCTCGTACGTCATTTAGGCTCGGACGTCGGTCGGGACCACCCGACCCTACAGGTGAACGCCGTCACGACGATCCTCAACCTCTCAATACTCGAAGCCAACAAAGCAAGGATCATGGACACTGACGGAGCCTTAAACGGCGTCATCGAGGTGCTCCGGTCCGGTGCCACGTGGGAGGCTAAAGGGAACGCGGCGGCTACGATATTCAGCTTATCAGGTGTGCACGCGTACAGGAAGAAACTAGGGAGGAAGGCACGTGTCATAAAGGCATTGGTGGACTTGGCCAGGGAGGGACCCGGGTTTTCCAAAAGGGACGCCATGGTGGCGATATTGAATTTGGCGGGAGAAAGAGAGGCGGTGGCGAAGTTGGTGGAAGGCGGGGTGGTGGAGATGACGATGGAAGTAATGGAGGGGCTACCGGAAGAGGCGGTGACGGTGTTGGAAGTGGTGGTGAGAGGAGGAGGGATGGGGGCAATTGCGGCGGCGTATGGGGCGATCAGGCATTTGGGAGTGGTGTTGAGAGAAGGGTCGGATAGGGCGAGGGAGAGCGCGGCGGCGACACTAGTGACAATTTGTAGAAAAGGGGGTCGGAAATGGTGGCGGAGTTGGTGTCGGTTTCGGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0010033 GO:0010200 GO:0010243 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

622

Amino Acids

68.62

Weight (kDa)

8.75

Isoelectric Point (pI)

42.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUB10_N	PF25368	52 - 164	3.9e-11	PUB10-like, N-terminal domain
U-box	PF04564	271 - 341	1.8e-20	U-box domain
ARM_PUB	PF25598	377 - 607	2.2e-10	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01830
fragaria_vesca	FvH4_5g29050
malus_domestica	MD04G1172400.v1.1 MD12G1185600.v1.1
prunus_persica	Prupe.6G290800_v2.0.a1
pyrus_communis	pycom04g15230 pycom12g17420
rosa_chinensis	RchiOBHm_Chr3g0460861
rosa_laevigata	RLG00000024973
rosa_multiflora	Rmu_sc0009011.1_g000007
rosa_roxburghii	Rroxscaffold_6G00419150
rosa_rugosa	Rorug03G0047000
rosa_samantha	Rh3AG104100 Rh3BG107800 Rh3CG109600 Rh3DG109600
rosa_wichuraiana	Rw3G008860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	447, 1272
AccB1I	GGYRCC	2 cut(s)	1008, 1406
AccBSI	CCGCTC	2 cut(s)	96, 251
AccII	CGCG	8 cut(s)	471, 482, 484, 981, 1014, 1433, 1469, 1793
AclWI	GGATC	6 cut(s)	500, 917, 1018, 1031, 1309, 1361
AcoI	YGGCCR	4 cut(s)	41, 867, 1188, 1524
AcsI	RAATTY	2 cut(s)	615, 1576
AcvI	CACGTG	3 cut(s)	930, 1413, 1499
AcyI	GRCGYC	6 cut(s)	444, 1109, 1164, 1269, 1383, 1557
AfaI	GTAC	3 cut(s)	275, 1251, 1472
AfiI	CCNNNNNNNGG	6 cut(s)	36, 50, 115, 421, 562, 941
AflIII	ACRYGT	4 cut(s)	927, 929, 1467, 1498
AgeI	ACCGGT	1 cut(s)	872
AgsI	TTSAA	3 cut(s)	759, 988, 1576
AhdI	GACNNNNNGTC	1 cut(s)	688
AhlI	ACTAGT	1 cut(s)	1804
AjnI	CCWGG	3 cut(s)	114, 1097, 1526
AjuI	GAANNNNNNNTTGG	2 cut(s)	651, 683
AloI	GAACNNNNNNTCC	2 cut(s)	1008, 1040
Alw21I	GWGCWC	3 cut(s)	1038, 1398, 1467
Alw26I	GTCTC	2 cut(s)	69, 657
Alw44I	GTGCAC	1 cut(s)	1463
AlwI	GGATC	6 cut(s)	500, 917, 1018, 1031, 1309, 1361
AlwNI	CAGNNNCTG	1 cut(s)	952
Ama87I	CYCGRG	1 cut(s)	1538
AoxI	GGCC	6 cut(s)	41, 718, 867, 954, 1188, 1524
ApaLI	GTGCAC	1 cut(s)	1463
ApeKI	GCWGC	4 cut(s)	141, 283, 324, 1154
ApoI	RAATTY	2 cut(s)	615, 1576
AsiGI	ACCGGT	1 cut(s)	872
Asp700I	GAANNNNTTC	1 cut(s)	570
AspLEI	GCGC	7 cut(s)	473, 482, 484, 755, 983, 1064, 1793
AspS9I	GGNCC	5 cut(s)	853, 955, 1279, 1401, 1535
AsuC2I	CCSGG	4 cut(s)	812, 857, 1539, 1540
AsuHPI	GGTGA	4 cut(s)	223, 1309, 1684, 1705
AsuII	TTCGAA	1 cut(s)	207
AvaI	CYCGRG	1 cut(s)	1538
AvaII	GGWCC	4 cut(s)	853, 1279, 1401, 1535
BaeGI	GKGCMC	1 cut(s)	1467
BalI	TGGCCA	3 cut(s)	869, 1190, 1526
BamHI	GGATCC	1 cut(s)	1023
BanI	GGYRCC	2 cut(s)	1008, 1406
BauI	CACGAG	1 cut(s)	374
BbrPI	CACGTG	3 cut(s)	930, 1413, 1499
BbsI	GAAGAC	2 cut(s)	216, 315
Bbv12I	GWGCWC	3 cut(s)	1038, 1398, 1467
BbvI	GCAGC	4 cut(s)	153, 270, 336, 1141
BccI	CCATC	5 cut(s)	52, 425, 905, 1633, 1702
BceAI	ACGGC	7 cut(s)	337, 848, 1049, 1122, 1177, 1289, 1396
BcgI	CGANNNNNNTGC	2 cut(s)	1225, 1259
BciT130I	CCWGG	3 cut(s)	116, 1099, 1528
BcnI	CCSGG	4 cut(s)	812, 857, 1539, 1540
BcoDI	GTCTC	2 cut(s)	69, 657
BcuI	ACTAGT	1 cut(s)	1804
BfaI	CTAG	6 cut(s)	215, 620, 647, 839, 1484, 1805
BfmI	CTRYAG	2 cut(s)	284, 1292
BfoI	RGCGCY	2 cut(s)	756, 1065
BglI	GCCNNNNNGGC	1 cut(s)	1565
Bme1390I	CCNGG	7 cut(s)	116, 812, 857, 1099, 1528, 1539, 1540
Bme18I	GGWCC	4 cut(s)	853, 1279, 1401, 1535
BmeRI	GACNNNNNGTC	1 cut(s)	688
BmeT110I	CYCGRG	1 cut(s)	1538
BmgT120I	GGNCC	5 cut(s)	853, 955, 1279, 1401, 1535
BmrFI	CCNGG	7 cut(s)	116, 812, 857, 1099, 1528, 1539, 1540
BmrI	ACTGGG	1 cut(s)	1135
BmuI	ACTGGG	1 cut(s)	1135
BoxI	GACNNNNGTC	1 cut(s)	1272
BpiI	GAAGAC	2 cut(s)	216, 315
BpmI	CTGGAG	1 cut(s)	1251
Bpu14I	TTCGAA	1 cut(s)	207
BpuMI	CCSGG	4 cut(s)	812, 857, 1539, 1540
BsaAI	YACGTR	3 cut(s)	930, 1413, 1499
BsaBI	GATNNNNATC	1 cut(s)	519
BsaHI	GRCGYC	6 cut(s)	444, 1109, 1164, 1269, 1383, 1557
BsaJI	CCNNGG	7 cut(s)	489, 510, 795, 864, 1527, 1538, 1560
BsaWI	WCCGGW	5 cut(s)	822, 872, 1398, 1403, 1660
BsaXI	ACNNNNNCTCC	6 cut(s)	635, 665, 1115, 1145, 1837, 1867
Bsc4I	CCNNNNNNNGG	6 cut(s)	36, 50, 115, 421, 562, 941
Bse118I	RCCGGY	1 cut(s)	872
Bse1I	ACTGG	1 cut(s)	1141
Bse3DI	GCAATG	1 cut(s)	1218
Bse8I	GATNNNNATC	1 cut(s)	519
BseBI	CCWGG	3 cut(s)	116, 1099, 1528
BseDI	CCNNGG	7 cut(s)	489, 510, 795, 864, 1527, 1538, 1560
BseGI	GGATG	4 cut(s)	342, 520, 1107, 1713
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	6 cut(s)	36, 50, 115, 421, 562, 941
BseMI	GCAATG	1 cut(s)	1218
BseMII	CTCAG	1 cut(s)	166
BseNI	ACTGG	1 cut(s)	1141
BsePI	GCGCGC	1 cut(s)	480
BseRI	GAGGAG	8 cut(s)	80, 92, 115, 140, 656, 677, 1713, 1716
BseSI	GKGCMC	1 cut(s)	1467
BseXI	GCAGC	4 cut(s)	153, 270, 336, 1141
Bsh1236I	CGCG	8 cut(s)	471, 482, 484, 981, 1014, 1433, 1469, 1793
Bsh1285I	CGRYCG	4 cut(s)	553, 861, 889, 1276
BshFI	GGCC	6 cut(s)	43, 720, 869, 956, 1190, 1526
BshNI	GGYRCC	2 cut(s)	1008, 1406
BshTI	ACCGGT	1 cut(s)	872
BsiEI	CGRYCG	4 cut(s)	553, 861, 889, 1276
BsiHKAI	GWGCWC	3 cut(s)	1038, 1398, 1467
BsiHKCI	CYCGRG	1 cut(s)	1538
BsiSI	CCGG	9 cut(s)	51, 812, 823, 857, 873, 1399, 1404, 1539, 1661
BsiWI	CGTACG	1 cut(s)	1249
BslFI	GGGAC	6 cut(s)	340, 866, 918, 1292, 1548, 1568
BslI	CCNNNNNNNGG	6 cut(s)	36, 50, 115, 421, 562, 941
BsmAI	GTCTC	2 cut(s)	69, 657
BsmFI	GGGAC	6 cut(s)	340, 866, 918, 1292, 1548, 1568
BsmI	GAATGC	1 cut(s)	20
BsnI	GGCC	6 cut(s)	43, 720, 869, 956, 1190, 1526
BsoBI	CYCGRG	1 cut(s)	1538
Bsp119I	TTCGAA	1 cut(s)	207
Bsp1286I	GDGCHC	3 cut(s)	1038, 1398, 1467
Bsp1407I	TGTACA	1 cut(s)	273
Bsp19I	CCATGG	1 cut(s)	1560
BspANI	GGCC	6 cut(s)	43, 720, 869, 956, 1190, 1526
BspCNI	CTCAG	1 cut(s)	165
BspFNI	CGCG	8 cut(s)	471, 482, 484, 981, 1014, 1433, 1469, 1793
BspMAI	CTGCAG	1 cut(s)	288
BspPI	GGATC	6 cut(s)	500, 917, 1018, 1031, 1309, 1361
BspT104I	TTCGAA	1 cut(s)	207
BspT107I	GGYRCC	2 cut(s)	1008, 1406
BsrBI	CCGCTC	2 cut(s)	96, 251
BsrDI	GCAATG	1 cut(s)	1218
BsrFI	RCCGGY	1 cut(s)	872
BsrGI	TGTACA	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	1141
BssAI	RCCGGY	1 cut(s)	872
BssECI	CCNNGG	7 cut(s)	489, 510, 795, 864, 1527, 1538, 1560
BssHII	GCGCGC	1 cut(s)	480
BssNI	GRCGYC	6 cut(s)	444, 1109, 1164, 1269, 1383, 1557
BssSI	CACGAG	1 cut(s)	374
BssT1I	CCWWGG	3 cut(s)	489, 510, 1560
Bst2BI	CACGAG	1 cut(s)	374
Bst2UI	CCWGG	3 cut(s)	116, 1099, 1528
Bst4CI	ACNGT	2 cut(s)	477, 1678
Bst6I	CTCTTC	5 cut(s)	209, 319, 631, 752, 1659
BstACI	GRCGYC	6 cut(s)	444, 1109, 1164, 1269, 1383, 1557
BstAUI	TGTACA	1 cut(s)	273
BstBAI	YACGTR	3 cut(s)	930, 1413, 1499
BstBI	TTCGAA	1 cut(s)	207
BstC8I	GCNNGC	4 cut(s)	482, 954, 1216, 1467
BstDEI	CTNAG	1 cut(s)	152
BstDSI	CCRYGG	2 cut(s)	864, 1560
BstENI	CCTNNNNNAGG	2 cut(s)	113, 560
BstF5I	GGATG	4 cut(s)	342, 520, 1107, 1713
BstFNI	CGCG	8 cut(s)	471, 482, 484, 981, 1014, 1433, 1469, 1793
BstH2I	RGCGCY	2 cut(s)	756, 1065
BstHHI	GCGC	7 cut(s)	473, 482, 484, 755, 983, 1064, 1793
BstMAI	GTCTC	2 cut(s)	69, 657
BstMCI	CGRYCG	4 cut(s)	553, 861, 889, 1276
BstNI	CCWGG	3 cut(s)	116, 1099, 1528
BstPAI	GACNNNNGTC	1 cut(s)	1272
BstSCI	CCNGG	7 cut(s)	114, 810, 855, 1097, 1526, 1537, 1538
BstSFI	CTRYAG	2 cut(s)	284, 1292
BstSLI	GKGCMC	1 cut(s)	1467
BstUI	CGCG	8 cut(s)	471, 482, 484, 981, 1014, 1433, 1469, 1793
BstV1I	GCAGC	4 cut(s)	153, 270, 336, 1141
BstV2I	GAAGAC	2 cut(s)	216, 315
BstX2I	RGATCY	1 cut(s)	1023
BstYI	RGATCY	1 cut(s)	1023
BsuRI	GGCC	6 cut(s)	43, 720, 869, 956, 1190, 1526
BtgI	CCRYGG	2 cut(s)	864, 1560
BtsCI	GGATG	4 cut(s)	342, 520, 1107, 1713
BtsIMutI	CAGTG	2 cut(s)	482, 1362
Cac8I	GCNNGC	4 cut(s)	482, 954, 1216, 1467
CaiI	CAGNNNCTG	1 cut(s)	952
CfoI	GCGC	7 cut(s)	473, 482, 484, 755, 983, 1064, 1793
Cfr10I	RCCGGY	1 cut(s)	872
Cfr13I	GGNCC	5 cut(s)	853, 955, 1279, 1401, 1535
Cfr9I	CCCGGG	1 cut(s)	1538
CpoI	CGGWCCG	1 cut(s)	1401
CseI	GACGC	6 cut(s)	503, 958, 1098, 1153, 1372, 1565
Csp6I	GTAC	3 cut(s)	274, 1250, 1471
CspAI	ACCGGT	1 cut(s)	872
CspI	CGGWCCG	1 cut(s)	1401
CviAII	CATG	6 cut(s)	61, 172, 544, 1003, 1357, 1561
CviQI	GTAC	3 cut(s)	274, 1250, 1471
DdeI	CTNAG	1 cut(s)	152
DriI	GACNNNNNGTC	1 cut(s)	688
EaeI	YGGCCR	4 cut(s)	41, 867, 1188, 1524
Eam1104I	CTCTTC	5 cut(s)	209, 319, 631, 752, 1659
Eam1105I	GACNNNNNGTC	1 cut(s)	688
EarI	CTCTTC	5 cut(s)	209, 319, 631, 752, 1659
EciI	GGCGGA	3 cut(s)	515, 830, 1858
Eco130I	CCWWGG	3 cut(s)	489, 510, 1560
Eco47I	GGWCC	4 cut(s)	853, 1279, 1401, 1535
Eco72I	CACGTG	3 cut(s)	930, 1413, 1499
Eco88I	CYCGRG	1 cut(s)	1538
EcoNI	CCTNNNNNAGG	2 cut(s)	113, 560
EcoO109I	RGGNCCY	2 cut(s)	853, 1535
EcoRI	GAATTC	1 cut(s)	615
EcoRII	CCWGG	3 cut(s)	114, 1097, 1526
EcoT14I	CCWWGG	3 cut(s)	489, 510, 1560
ErhI	CCWWGG	3 cut(s)	489, 510, 1560
FaeI	CATG	6 cut(s)	64, 175, 547, 1006, 1360, 1564
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FaqI	GGGAC	6 cut(s)	340, 866, 918, 1292, 1548, 1568
FatI	CATG	6 cut(s)	60, 171, 543, 1002, 1356, 1560
FauI	CCCGC	5 cut(s)	33, 146, 843, 1576, 1613
FokI	GGATG	4 cut(s)	329, 527, 1114, 1720
FspBI	CTAG	6 cut(s)	215, 620, 647, 839, 1484, 1805
GlaI	GCGC	7 cut(s)	472, 481, 483, 754, 982, 1063, 1792
GsuI	CTGGAG	1 cut(s)	1251
HaeII	RGCGCY	2 cut(s)	756, 1065
HaeIII	GGCC	6 cut(s)	43, 720, 869, 956, 1190, 1526
HapII	CCGG	9 cut(s)	51, 812, 823, 857, 873, 1399, 1404, 1539, 1661
HgaI	GACGC	6 cut(s)	503, 958, 1098, 1153, 1372, 1565
HhaI	GCGC	7 cut(s)	473, 482, 484, 755, 983, 1064, 1793
Hin1I	GRCGYC	6 cut(s)	444, 1109, 1164, 1269, 1383, 1557
Hin1II	CATG	6 cut(s)	64, 175, 547, 1006, 1360, 1564
Hin6I	GCGC	7 cut(s)	471, 480, 482, 753, 981, 1062, 1791
HinP1I	GCGC	7 cut(s)	471, 480, 482, 753, 981, 1062, 1791
HincII	GTYRAC	1 cut(s)	1123
HindII	GTYRAC	1 cut(s)	1123
HindIII	AAGCTT	1 cut(s)	188
HpaII	CCGG	9 cut(s)	51, 812, 823, 857, 873, 1399, 1404, 1539, 1661
HphI	GGTGA	4 cut(s)	223, 1309, 1684, 1705
Hpy166II	GTNNAC	5 cut(s)	1123, 1171, 1300, 1465, 1519
Hpy188III	TCNNGA	8 cut(s)	386, 575, 620, 890, 918, 1069, 1277, 1309
Hpy8I	GTNNAC	5 cut(s)	1123, 1171, 1300, 1465, 1519
Hpy99I	CGWCG	9 cut(s)	443, 446, 449, 461, 686, 1114, 1169, 1274, 1315
HpyAV	CCTTC	5 cut(s)	67, 208, 1486, 1610, 1760
HpyCH4III	ACNGT	2 cut(s)	477, 1678
HpyCH4IV	ACGT	6 cut(s)	444, 929, 1252, 1269, 1412, 1498
HpyCH4V	TGCA	3 cut(s)	286, 1218, 1465
HpyF3I	CTNAG	1 cut(s)	152
HpySE526I	ACGT	6 cut(s)	444, 929, 1252, 1269, 1412, 1498
Hsp92I	GRCGYC	6 cut(s)	444, 1109, 1164, 1269, 1383, 1557
Hsp92II	CATG	6 cut(s)	64, 175, 547, 1006, 1360, 1564
HspAI	GCGC	7 cut(s)	471, 480, 482, 753, 981, 1062, 1791
KflI	GGGWCCC	2 cut(s)	853, 1535
LmnI	GCTCC	9 cut(s)	53, 424, 471, 545, 643, 799, 1232, 1370, 1401
Lsp1109I	GCAGC	4 cut(s)	153, 270, 336, 1141
MaeI	CTAG	6 cut(s)	215, 620, 647, 839, 1484, 1805
MaeII	ACGT	6 cut(s)	444, 929, 1252, 1269, 1412, 1498
MaeIII	GTNAC	3 cut(s)	1306, 1672, 1807
MbiI	CCGCTC	2 cut(s)	96, 251
MfeI	CAATTG	2 cut(s)	701, 1716
MflI	RGATCY	1 cut(s)	1023
MhlI	GDGCHC	3 cut(s)	1038, 1398, 1467
MlsI	TGGCCA	3 cut(s)	869, 1190, 1526
MluCI	AATT	5 cut(s)	615, 701, 1576, 1716, 1812
MluI	ACGCGT	1 cut(s)	1467
MluNI	TGGCCA	3 cut(s)	869, 1190, 1526
MlyI	GAGTC	7 cut(s)	169, 305, 362, 376, 617, 659, 902
MmeI	TCCRAC	4 cut(s)	102, 1662, 1752, 1811
Mox20I	TGGCCA	3 cut(s)	869, 1190, 1526
MroXI	GAANNNNTTC	1 cut(s)	570
MscI	TGGCCA	3 cut(s)	869, 1190, 1526
MseI	TTAA	2 cut(s)	429, 1376
MslI	CAYNNNNRTG	2 cut(s)	1100, 1391
Msp20I	TGGCCA	3 cut(s)	869, 1190, 1526
MspA1I	CMGCKG	1 cut(s)	1021
MspI	CCGG	9 cut(s)	51, 812, 823, 857, 873, 1399, 1404, 1539, 1661
MspR9I	CCNGG	7 cut(s)	116, 812, 857, 1099, 1528, 1539, 1540
MunI	CAATTG	2 cut(s)	701, 1716
Mva1269I	GAATGC	1 cut(s)	20
MvaI	CCWGG	3 cut(s)	116, 1099, 1528
MvnI	CGCG	8 cut(s)	471, 482, 484, 981, 1014, 1433, 1469, 1793
NciI	CCSGG	4 cut(s)	812, 857, 1539, 1540
NcoI	CCATGG	1 cut(s)	1560
NlaIII	CATG	6 cut(s)	64, 175, 547, 1006, 1360, 1564
NmeAIII	GCCGAG	1 cut(s)	1235
NmuCI	GTSAC	3 cut(s)	1306, 1672, 1807
NspV	TTCGAA	1 cut(s)	207
PauI	GCGCGC	1 cut(s)	480
PcsI	WCGNNNNNNNCGW	5 cut(s)	444, 453, 1038, 1386, 1778
PctI	GAATGC	1 cut(s)	20
PdmI	GAANNNNTTC	1 cut(s)	570
PfeI	GAWTC	5 cut(s)	134, 291, 914, 1199, 1237
Pfl23II	CGTACG	1 cut(s)	1249
PflFI	GACNNNGTC	3 cut(s)	443, 857, 1108
PinAI	ACCGGT	1 cut(s)	872
Ple19I	CGATCG	2 cut(s)	553, 889
PleI	GAGTC	7 cut(s)	169, 305, 361, 376, 617, 658, 901
PmaCI	CACGTG	3 cut(s)	930, 1413, 1499
PmlI	CACGTG	3 cut(s)	930, 1413, 1499
PpsI	GAGTC	7 cut(s)	169, 305, 361, 376, 617, 658, 901
Ppu21I	YACGTR	3 cut(s)	930, 1413, 1499
PpuMI	RGGWCCY	2 cut(s)	853, 1535
PshAI	GACNNNNGTC	1 cut(s)	1272
Psp5II	RGGWCCY	2 cut(s)	853, 1535
Psp6I	CCWGG	3 cut(s)	114, 1097, 1526
PspCI	CACGTG	3 cut(s)	930, 1413, 1499
PspGI	CCWGG	3 cut(s)	114, 1097, 1526
PspLI	CGTACG	1 cut(s)	1249
PspPI	GGNCC	5 cut(s)	853, 955, 1279, 1401, 1535
PspPPI	RGGWCCY	2 cut(s)	853, 1535
PstI	CTGCAG	1 cut(s)	288
PstNI	CAGNNNCTG	1 cut(s)	952
PsuI	RGATCY	1 cut(s)	1023
PsyI	GACNNNGTC	3 cut(s)	443, 857, 1108
PteI	GCGCGC	1 cut(s)	480
PvuI	CGATCG	2 cut(s)	553, 889
RsaI	GTAC	3 cut(s)	275, 1251, 1472
RsaNI	GTAC	3 cut(s)	274, 1250, 1471
RseI	CAYNNNNRTG	2 cut(s)	1100, 1391
Rsr2I	CGGWCCG	1 cut(s)	1401
RsrII	CGGWCCG	1 cut(s)	1401
SaqAI	TTAA	2 cut(s)	429, 1376
Sau96I	GGNCC	5 cut(s)	853, 955, 1279, 1401, 1535
SchI	GAGTC	7 cut(s)	169, 305, 362, 376, 617, 659, 902
ScrFI	CCNGG	7 cut(s)	116, 812, 857, 1099, 1528, 1539, 1540
SduI	GDGCHC	3 cut(s)	1038, 1398, 1467
SfcI	CTRYAG	2 cut(s)	284, 1292
SfuI	TTCGAA	1 cut(s)	207
SinI	GGWCC	4 cut(s)	853, 1279, 1401, 1535
SmaI	CCCGGG	1 cut(s)	1540
SmiMI	CAYNNNNRTG	2 cut(s)	1100, 1391
SpeI	ACTAGT	1 cut(s)	1804
Sse9I	AATT	5 cut(s)	615, 701, 1576, 1716, 1812
SspMI	CTAG	6 cut(s)	215, 620, 647, 839, 1484, 1805
StyD4I	CCNGG	7 cut(s)	114, 810, 855, 1097, 1526, 1537, 1538
StyI	CCWWGG	3 cut(s)	489, 510, 1560
TaaI	ACNGT	2 cut(s)	477, 1678
TaiI	ACGT	6 cut(s)	447, 932, 1255, 1272, 1415, 1501
TaqII	GACCGA	1 cut(s)	1262
TasI	AATT	5 cut(s)	615, 701, 1576, 1716, 1812
TatI	WGTACW	1 cut(s)	273
TfiI	GAWTC	5 cut(s)	134, 291, 914, 1199, 1237
Tru1I	TTAA	2 cut(s)	429, 1376
Tru9I	TTAA	2 cut(s)	429, 1376
TscAI	CASTG	2 cut(s)	482, 1369
TseFI	GTSAC	3 cut(s)	1306, 1672, 1807
TseI	GCWGC	4 cut(s)	141, 283, 324, 1154
Tsp45I	GTSAC	3 cut(s)	1306, 1672, 1807
TspDTI	ATGAA	1 cut(s)	49
TspGWI	ACGGA	1 cut(s)	1383
TspMI	CCCGGG	1 cut(s)	1538
TspRI	CASTG	2 cut(s)	482, 1369
Tth111I	GACNNNGTC	3 cut(s)	443, 857, 1108
VneI	GTGCAC	1 cut(s)	1463
VpaK11BI	GGWCC	4 cut(s)	853, 1279, 1401, 1535
XagI	CCTNNNNNAGG	2 cut(s)	113, 560
XapI	RAATTY	2 cut(s)	615, 1576
XbaI	TCTAGA	1 cut(s)	619
XcmI	CCANNNNNNNNNTGG	1 cut(s)	700
XmaI	CCCGGG	1 cut(s)	1538
XmnI	GAANNNNTTC	1 cut(s)	570
XspI	CTAG	6 cut(s)	215, 620, 647, 839, 1484, 1805
ZraI	GACGTC	2 cut(s)	445, 1270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.