pycom04g17030

Solute carrier family 40 member 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0011217
Physical Location & Seq
Forward (+)
19581010 .. 19585393
4384 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g17030.3

Sequence Viewer

Length: 1701 bp
ATGGCTTCGGGTAGCGGTTTTGGGGTTACTCTCTCACAGTATTCTCTCTCCTTCAATTCATCTACTAGTTTATTCCCTGCTTGCCGGGCTTCTGTTTCATCGAGGCAACCACGGCCTTCCTCTCGAATTCGCTATCGAATTGATTCTGGCAGATGGTTGGGCTTGAGGCACCTTTCTGTGGGTTCTCAGAGATTCGACAGTTTTAGTTCAAGGTGTTCAATAACCAACACCGATGTACACTTCAACCACGTGGCTACTGACAATGAGGTCCAGGAGGAATCATCTGTTGCAGAGCCTGGTTGCTCTGGTTGCTCAGTCCCAATTGTTGATATGCTTGAGACCGAATCTTTGAGTTTACTAACTGAAGATACTTATGTAGATTGTCTCTTGACGACACTGCCTGTTTTATCAAAAGAGGAGCAACATACGCTTGCAGCTACTCCGGCCCATCCAATGGGATTATATGCTCTCTATGCTAGTTGTCTAGCTGGAAATTTAGTGGAGCAATTTTGGAATTTTTCTTGGCCCTCTGCTATCGCATTGATATATCCAAGCCTTCTACCAGTGGCGTTTATGGGTTTCTTTAGTAAGGCAGCTGCTCAGTTGTTATCTGCAGCGCTGATAATCTATGCTCATTCTGTTCCTCCTTCTGTGGCATCCCTTCTTCACCGCCCTTGGTTCATTGTGCTTGTAGTAGCTGGGGCTGTGGAGAGGCTATCTGGTGTAGCATTGGGGGTTGCTATGGAGCGAGTGAACAGGCCTATTGCGCTTGCCCAAGCAAATGCTGTTCTTAATCGAATTGATCGTCTCTGTGAGATTGCCGGAGCATCACTATTTGGCATTCTTCTATCAAAATATGACCCAGTAACATGCTTGAAATTTTCTGGAGGTTTGATGGTGTGGTCATTGCCTTTTGCAATTGTTCTCACATGTTTGACCAACAAGCTTTCGAGTGGGGTTCTTGACCGCCCAAAATGTTCACAAACTTGTTGTAGAATGTCTACAGAAGTATCTCTGTTTGATATCAACGATATAGTGGATAAAGGTGTGGCAGCTATTAAACTTGGATGGAAGGAGTACATGCAGCAACCAGTTCTTCCTGCTAGCCTAGCCTATGTGCTGCTCTATTTTAATGTTGTACTCACTCCAGGCAGTTTGATGACAGCATTTCTAACGCAGAGTGGTCTAAATCCATCTATTATTGGAGGTTTTAGTGGACTGTGTGCTTTTATGGGTGTTGCAGCGACATTTGTGTCGGCAAGCCTGGTCAGGCGACTTGGCATCTTAAAGGCAGGAGCGGCGGGATTAATATTTCAAGCTTCACTTCTCACCGTTGCTGTTGCTGTTTATTGTAGTGGATCTTCCTCCCAGCAGAGCCCCCTTCTATTCTTCTTGTGTTTGATTGTATTATCAAGGCTGGGGCACATGTCATACGATGTTGTGGCAGCACAGATTCTTCAAACTGGGATTCCATCATCCAAAGCAAATATTATTGGCGCAACAGAAGTTGCTGTTGCTAGTCTGGCAGAGTTTACAATGTGGGGAATTGCAATAATTGCCAATGACGTTTCACATTTTGGCTTTCTAGCAGTGCTGTCACTCCTATCAGTGGTTGGGGCAGCGTTGATGTTCTGCCGGTGGTTGTTGAATCCATCAGACGAACAAAGAAATCTCTTCTCTTTTGATGCTCGGTGTCAATAA

Protein Analysis

567

Amino Acids

60.63

Weight (kDa)

7.06

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011217)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26820
fragaria_vesca FvH4_6g07510 FvH4_6g07510
malus_domestica MD04G1193000.v1.1 MD12G1205200.v1.1
prunus_persica Prupe.6G312300_v2.0.a1
pyrus_communis pycom04g17030 pycom12g19300
rosa_chinensis RchiOBHm_Chr3g0457221
rosa_laevigata RLG00000025242
rosa_multiflora Rmu_co8479255.1_g000001 Rmu_sc0000488.1_g000027 Rmu_sc0016647.1_g000001
rosa_roxburghii Rroxscaffold_6G00422100
rosa_rugosa Rorug03G0019400
rosa_samantha Rh3AG079300 Rh3BG081000 Rh3CG081300 Rh3DG083000
rosa_wichuraiana Rw3G006830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 266, 1252
AccB1I GGYRCC 1 cut(s) 168
AccB7I CCANNNNNTGG 1 cut(s) 454
AccBSI CCGCTC 1 cut(s) 1298
AccI GTMKAC 1 cut(s) 1001
AciI CCGC 5 cut(s) 15, 670, 967, 1298, 1301
AclWI GGATC 1 cut(s) 1366
AcsI RAATTY 4 cut(s) 126, 493, 514, 878
AcuI CTGAAG 1 cut(s) 384
AcvI CACGTG 1 cut(s) 250
AfaI GTAC 3 cut(s) 237, 1079, 1140
AfeI AGCGCT 1 cut(s) 618
AfiI CCNNNNNNNGG 3 cut(s) 178, 454, 1609
AflIII ACRYGT 2 cut(s) 929, 1425
AgsI TTSAA 8 cut(s) 55, 210, 219, 244, 877, 1316, 1460, 1648
AhlI ACTAGT 1 cut(s) 65
AjnI CCWGG 4 cut(s) 270, 295, 1147, 1263
AluBI AGCT 7 cut(s) 437, 488, 596, 698, 946, 1055, 1319
AluI AGCT 7 cut(s) 437, 488, 596, 698, 946, 1055, 1319
Alw26I GTCTC 3 cut(s) 332, 389, 812
AlwI GGATC 1 cut(s) 1366
AlwNI CAGNNNCTG 1 cut(s) 296
Aor51HI AGCGCT 1 cut(s) 618
AoxI GGCC 4 cut(s) 113, 444, 524, 758
ApoI RAATTY 4 cut(s) 126, 493, 514, 878
ArsI GACNNNNNNTTYG 4 cut(s) 331, 363, 790, 822
AseI ATTAAT 1 cut(s) 1307
Asp700I GAANNNNTTC 1 cut(s) 142
AspLEI GCGC 3 cut(s) 619, 769, 1499
AspS9I GGNCC 3 cut(s) 268, 445, 525
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 659, 1321
AsuNHI GCTAGC 1 cut(s) 1103
AvaII GGWCC 1 cut(s) 268
BaeGI GKGCMC 1 cut(s) 1425
BaeI ACNNNNGTAYC 4 cut(s) 360, 393, 993, 1026
BanI GGYRCC 1 cut(s) 168
BanII GRGCYC 1 cut(s) 1379
BarI GAAGNNNNNNTAC 2 cut(s) 1345, 1377
BbrPI CACGTG 1 cut(s) 250
BccI CCATC 7 cut(s) 147, 456, 889, 1062, 1201, 1480, 1660
BceAI ACGGC 1 cut(s) 128
BciT130I CCWGG 4 cut(s) 272, 297, 1149, 1265
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 3 cut(s) 332, 389, 812
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 7 cut(s) 66, 477, 485, 1104, 1109, 1518, 1586
BfmI CTRYAG 2 cut(s) 612, 1002
BfoI RGCGCY 1 cut(s) 620
Bme1390I CCNGG 5 cut(s) 86, 272, 297, 1149, 1265
Bme18I GGWCC 1 cut(s) 268
BmgT120I GGNCC 3 cut(s) 268, 445, 525
BmiI GGNNCC 1 cut(s) 170
BmrFI CCNGG 5 cut(s) 86, 272, 297, 1149, 1265
BmrI ACTGGG 2 cut(s) 857, 1473
BmsI GCATC 4 cut(s) 665, 836, 1290, 1675
BmtI GCTAGC 1 cut(s) 1107
BmuI ACTGGG 2 cut(s) 857, 1473
BpmI CTGGAG 2 cut(s) 906, 1131
BpuEI CTTGAG 2 cut(s) 184, 356
BpuMI CCSGG 1 cut(s) 86
BsaAI YACGTR 1 cut(s) 250
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 2 cut(s) 110, 674
Bsc4I CCNNNNNNNGG 3 cut(s) 178, 454, 1609
Bse118I RCCGGY 1 cut(s) 1635
Bse1I ACTGG 4 cut(s) 563, 863, 1091, 1468
Bse3DI GCAATG 1 cut(s) 905
BseBI CCWGG 4 cut(s) 272, 297, 1149, 1265
BseDI CCNNGG 2 cut(s) 110, 674
BseGI GGATG 4 cut(s) 448, 656, 1073, 1475
BseLI CCNNNNNNNGG 3 cut(s) 178, 454, 1609
BseMI GCAATG 1 cut(s) 905
BseMII CTCAG 3 cut(s) 200, 327, 614
BseNI ACTGG 4 cut(s) 563, 863, 1091, 1468
BseRI GAGGAG 1 cut(s) 431
BseSI GKGCMC 1 cut(s) 1425
BseYI CCCAGC 3 cut(s) 698, 1368, 1417
BshFI GGCC 4 cut(s) 115, 446, 526, 760
BshNI GGYRCC 1 cut(s) 168
BsiSI CCGG 4 cut(s) 85, 443, 822, 1636
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 3 cut(s) 178, 454, 1609
BsmAI GTCTC 3 cut(s) 332, 389, 812
BsmBI CGTCTC 1 cut(s) 812
BsmFI GGGAC 1 cut(s) 302
BsmI GAATGC 1 cut(s) 840
BsnI GGCC 4 cut(s) 115, 446, 526, 760
Bso31I GGTCTC 1 cut(s) 332
Bsp1286I GDGCHC 2 cut(s) 1379, 1425
Bsp1407I TGTACA 1 cut(s) 235
Bsp143I GATC 2 cut(s) 802, 1358
BspACI CCGC 5 cut(s) 15, 670, 967, 1298, 1301
BspANI GGCC 4 cut(s) 115, 446, 526, 760
BspCNI CTCAG 3 cut(s) 199, 326, 613
BspLI GGNNCC 1 cut(s) 170
BspMAI CTGCAG 1 cut(s) 616
BspOI GCTAGC 1 cut(s) 1107
BspPI GGATC 1 cut(s) 1366
BspT107I GGYRCC 1 cut(s) 168
BspTNI GGTCTC 1 cut(s) 332
BsrBI CCGCTC 1 cut(s) 1298
BsrDI GCAATG 1 cut(s) 905
BsrFI RCCGGY 1 cut(s) 1635
BsrGI TGTACA 1 cut(s) 235
BsrI ACTGG 4 cut(s) 563, 863, 1091, 1468
BssAI RCCGGY 1 cut(s) 1635
BssECI CCNNGG 2 cut(s) 110, 674
BssMI GATC 2 cut(s) 802, 1358
BssT1I CCWWGG 1 cut(s) 674
Bst2UI CCWGG 4 cut(s) 272, 297, 1149, 1265
Bst4CI ACNGT 4 cut(s) 39, 200, 1221, 1333
Bst6I CTCTTC 1 cut(s) 1679
BstAPI GCANNNNNTGC 1 cut(s) 1556
BstAUI TGTACA 1 cut(s) 235
BstBAI YACGTR 1 cut(s) 250
BstC8I GCNNGC 5 cut(s) 82, 432, 771, 1105, 1261
BstDEI CTNAG 3 cut(s) 186, 313, 600
BstDSI CCRYGG 1 cut(s) 110
BstF5I GGATG 4 cut(s) 448, 656, 1073, 1475
BstH2I RGCGCY 1 cut(s) 620
BstHHI GCGC 3 cut(s) 619, 769, 1499
BstKTI GATC 2 cut(s) 805, 1361
BstMAI GTCTC 3 cut(s) 332, 389, 812
BstMBI GATC 2 cut(s) 802, 1358
BstNI CCWGG 4 cut(s) 272, 297, 1149, 1265
BstNSI RCATGY 4 cut(s) 873, 933, 1084, 1429
BstSCI CCNGG 5 cut(s) 84, 270, 295, 1147, 1263
BstSFI CTRYAG 2 cut(s) 612, 1002
BstSLI GKGCMC 1 cut(s) 1425
BstX2I RGATCY 1 cut(s) 1358
BstYI RGATCY 1 cut(s) 1358
BsuRI GGCC 4 cut(s) 115, 446, 526, 760
BtgI CCRYGG 1 cut(s) 110
BtsCI GGATG 4 cut(s) 448, 656, 1073, 1475
BtsI GCAGTG 2 cut(s) 395, 1596
BtsIMutI CAGTG 4 cut(s) 395, 570, 1596, 1614
Cac8I GCNNGC 5 cut(s) 82, 432, 771, 1105, 1261
CaiI CAGNNNCTG 1 cut(s) 296
CfoI GCGC 3 cut(s) 619, 769, 1499
Cfr10I RCCGGY 1 cut(s) 1635
Cfr13I GGNCC 3 cut(s) 268, 445, 525
Csp6I GTAC 3 cut(s) 236, 1078, 1139
CviAII CATG 4 cut(s) 870, 930, 1081, 1426
CviQI GTAC 3 cut(s) 236, 1078, 1139
DdeI CTNAG 3 cut(s) 186, 313, 600
DpnI GATC 2 cut(s) 804, 1360
DpnII GATC 2 cut(s) 802, 1358
DrdI GACNNNNNNGTC 2 cut(s) 266, 1252
DseDI GACNNNNNNGTC 2 cut(s) 266, 1252
Eam1104I CTCTTC 1 cut(s) 1679
EarI CTCTTC 1 cut(s) 1679
Eco130I CCWWGG 1 cut(s) 674
Eco147I AGGCCT 1 cut(s) 760
Eco24I GRGCYC 1 cut(s) 1379
Eco31I GGTCTC 1 cut(s) 332
Eco32I GATATC 1 cut(s) 1024
Eco47I GGWCC 1 cut(s) 268
Eco47III AGCGCT 1 cut(s) 618
Eco57I CTGAAG 1 cut(s) 384
Eco72I CACGTG 1 cut(s) 250
EcoRI GAATTC 1 cut(s) 126
EcoRII CCWGG 4 cut(s) 270, 295, 1147, 1263
EcoRV GATATC 1 cut(s) 1024
EcoT14I CCWWGG 1 cut(s) 674
EcoT38I GRGCYC 1 cut(s) 1379
ErhI CCWWGG 1 cut(s) 674
Esp3I CGTCTC 1 cut(s) 812
FaeI CATG 4 cut(s) 873, 933, 1084, 1429
FalI AAGNNNNNCTT 2 cut(s) 1308, 1340
FaqI GGGAC 1 cut(s) 302
FatI CATG 4 cut(s) 869, 929, 1080, 1425
FauI CCCGC 1 cut(s) 1294
FblI GTMKAC 1 cut(s) 1001
FokI GGATG 4 cut(s) 435, 643, 1080, 1462
FriOI GRGCYC 1 cut(s) 1379
FspBI CTAG 7 cut(s) 66, 477, 485, 1104, 1109, 1518, 1586
GlaI GCGC 3 cut(s) 618, 768, 1498
GsaI CCCAGC 3 cut(s) 702, 1372, 1421
GsuI CTGGAG 2 cut(s) 906, 1131
HaeII RGCGCY 1 cut(s) 620
HaeIII GGCC 4 cut(s) 115, 446, 526, 760
HapII CCGG 4 cut(s) 85, 443, 822, 1636
HhaI GCGC 3 cut(s) 619, 769, 1499
Hin1II CATG 4 cut(s) 873, 933, 1084, 1429
Hin6I GCGC 3 cut(s) 617, 767, 1497
HinP1I GCGC 3 cut(s) 617, 767, 1497
HindIII AAGCTT 2 cut(s) 944, 1317
HinfI GANTC 7 cut(s) 143, 192, 278, 344, 1453, 1468, 1648
HpaII CCGG 4 cut(s) 85, 443, 822, 1636
HphI GGTGA 2 cut(s) 659, 1321
Hpy166II GTNNAC 7 cut(s) 238, 356, 754, 980, 1002, 1217, 1533
Hpy188I TCNGA 2 cut(s) 189, 1657
Hpy188III TCNNGA 4 cut(s) 123, 388, 885, 962
Hpy8I GTNNAC 7 cut(s) 238, 356, 754, 980, 1002, 1217, 1533
HpyAV CCTTC 7 cut(s) 61, 126, 566, 657, 671, 1066, 1391
HpyCH4III ACNGT 4 cut(s) 39, 200, 1221, 1333
HpyCH4IV ACGT 2 cut(s) 249, 1566
HpyCH4V TGCA 7 cut(s) 290, 434, 614, 917, 1084, 1241, 1550
HpyF3I CTNAG 3 cut(s) 186, 313, 600
HpySE526I ACGT 2 cut(s) 249, 1566
Hsp92II CATG 4 cut(s) 873, 933, 1084, 1429
HspAI GCGC 3 cut(s) 617, 767, 1497
Kzo9I GATC 2 cut(s) 802, 1358
LmnI GCTCC 5 cut(s) 418, 502, 745, 824, 1295
LweI GCATC 4 cut(s) 665, 836, 1290, 1675
MaeI CTAG 7 cut(s) 66, 477, 485, 1104, 1109, 1518, 1586
MaeII ACGT 2 cut(s) 249, 1566
MaeIII GTNAC 3 cut(s) 25, 865, 1596
MalI GATC 2 cut(s) 804, 1360
MbiI CCGCTC 1 cut(s) 1298
MboI GATC 2 cut(s) 802, 1358
MboII GAAGA 8 cut(s) 377, 656, 836, 1088, 1353, 1381, 1448, 1666
MfeI CAATTG 2 cut(s) 321, 918
MflI RGATCY 1 cut(s) 1358
MhlI GDGCHC 2 cut(s) 1379, 1425
MroXI GAANNNNTTC 1 cut(s) 142
MseI TTAA 5 cut(s) 792, 1059, 1131, 1286, 1307
MspA1I CMGCKG 1 cut(s) 596
MspI CCGG 4 cut(s) 85, 443, 822, 1636
MspR9I CCNGG 5 cut(s) 86, 272, 297, 1149, 1265
MunI CAATTG 2 cut(s) 321, 918
Mva1269I GAATGC 1 cut(s) 840
MvaI CCWGG 4 cut(s) 272, 297, 1149, 1265
NciI CCSGG 1 cut(s) 86
NdeII GATC 2 cut(s) 802, 1358
NheI GCTAGC 1 cut(s) 1103
NlaIII CATG 4 cut(s) 873, 933, 1084, 1429
NlaIV GGNNCC 1 cut(s) 170
NmuCI GTSAC 1 cut(s) 1596
NspI RCATGY 4 cut(s) 873, 933, 1084, 1429
PceI AGGCCT 1 cut(s) 760
PciI ACATGT 2 cut(s) 929, 1425
PcsI WCGNNNNNNNCGW 1 cut(s) 802
PctI GAATGC 1 cut(s) 840
PdmI GAANNNNTTC 1 cut(s) 142
PfeI GAWTC 7 cut(s) 143, 192, 278, 344, 1453, 1468, 1648
PflMI CCANNNNNTGG 1 cut(s) 454
PfoI TCCNGGA 1 cut(s) 270
PmaCI CACGTG 1 cut(s) 250
PmlI CACGTG 1 cut(s) 250
Ppu21I YACGTR 1 cut(s) 250
PscI ACATGT 2 cut(s) 929, 1425
PshBI ATTAAT 1 cut(s) 1307
Psp6I CCWGG 4 cut(s) 270, 295, 1147, 1263
PspCI CACGTG 1 cut(s) 250
PspFI CCCAGC 3 cut(s) 698, 1368, 1417
PspGI CCWGG 4 cut(s) 270, 295, 1147, 1263
PspN4I GGNNCC 1 cut(s) 170
PspPI GGNCC 3 cut(s) 268, 445, 525
PstI CTGCAG 1 cut(s) 616
PstNI CAGNNNCTG 1 cut(s) 296
PsuI RGATCY 1 cut(s) 1358
PvuII CAGCTG 1 cut(s) 596
RsaI GTAC 3 cut(s) 237, 1079, 1140
RsaNI GTAC 3 cut(s) 236, 1078, 1139
SaqAI TTAA 5 cut(s) 792, 1059, 1131, 1286, 1307
Sau3AI GATC 2 cut(s) 802, 1358
Sau96I GGNCC 3 cut(s) 268, 445, 525
ScrFI CCNGG 5 cut(s) 86, 272, 297, 1149, 1265
SduI GDGCHC 2 cut(s) 1379, 1425
SfaNI GCATC 4 cut(s) 665, 836, 1290, 1675
SfcI CTRYAG 2 cut(s) 612, 1002
SinI GGWCC 1 cut(s) 268
SmlI CTYRAG 2 cut(s) 163, 335
SmoI CTYRAG 2 cut(s) 163, 335
SpeI ACTAGT 1 cut(s) 65
SseBI AGGCCT 1 cut(s) 760
SsiI CCGC 5 cut(s) 15, 670, 967, 1298, 1301
SspI AATATT 2 cut(s) 1311, 1489
SspMI CTAG 7 cut(s) 66, 477, 485, 1104, 1109, 1518, 1586
StuI AGGCCT 1 cut(s) 760
StyD4I CCNGG 5 cut(s) 84, 270, 295, 1147, 1263
StyI CCWWGG 1 cut(s) 674
TaaI ACNGT 4 cut(s) 39, 200, 1221, 1333
TaiI ACGT 2 cut(s) 252, 1569
TaqI TCGA 6 cut(s) 101, 124, 136, 195, 796, 950
TaqII GACCGA 1 cut(s) 356
TatI WGTACW 3 cut(s) 235, 1077, 1138
TauI GCSGC 1 cut(s) 1301
TfiI GAWTC 7 cut(s) 143, 192, 278, 344, 1453, 1468, 1648
Tru1I TTAA 5 cut(s) 792, 1059, 1131, 1286, 1307
Tru9I TTAA 5 cut(s) 792, 1059, 1131, 1286, 1307
TscAI CASTG 4 cut(s) 402, 570, 1596, 1614
TseFI GTSAC 1 cut(s) 1596
Tsp45I GTSAC 1 cut(s) 1596
TspDTI ATGAA 3 cut(s) 48, 87, 670
TspRI CASTG 4 cut(s) 402, 570, 1596, 1614
Van91I CCANNNNNTGG 1 cut(s) 454
VpaK11BI GGWCC 1 cut(s) 268
VspI ATTAAT 1 cut(s) 1307
XapI RAATTY 4 cut(s) 126, 493, 514, 878
XceI RCATGY 4 cut(s) 873, 933, 1084, 1429
XmiI GTMKAC 1 cut(s) 1001
XmnI GAANNNNTTC 1 cut(s) 142
XspI CTAG 7 cut(s) 66, 477, 485, 1104, 1109, 1518, 1586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.