Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0011217

Physical Location & Seq

Genomic Coordinates Reverse (-)

6423821 .. 6428315

Gene Structure 4495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG083000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGGAGATTGAGAGCCACCCATTTGGTATTGGTTGCAATTCTGTTTTGTCAAAAGAGGAGCAGCACACCCTTGCAGCTACTCCGGCCCATCCAATGGGATTATATGCTTTATATGCTAGTTGTCTAGCTGGAAATGTGGTGGAACAATTTTGGAATTTCGCTTGGCCCTCTGCTATTGCATTAATATATCCAAGCCTTTTGCCAGTGGCCCTCATGGGTTTTGTTAGTAAGCTTGCAATAATTGCTGGAGGTCCGATAGTGGGTACACTTATGGATCATTTCCCCAGAGTGCCTGCGTATAACTGTCTGAATATTATCCAGGCAGCTGCTCAGTTATTATCTGCAACAATGATAATTCGTGCTCATTCAGTTCCCCCTTCTGCATCGTCCCTCCTTCTCCGTCCCTGGTTCATTGTACTTGTATTGAGTGGAGCTGTAGAGAGGCTATCTGGTGTAGCATTAGGAGTTGCTGCAGAGCGTGATTGGGTGGTGCAGTTGGCAGGAGTGAACAGGCCTATTGCACTCGCAGAAGCAAATGCCATTCTTAGTCGAATTGACCTACTCTGTGAGATAGCTGGGGCATCACTATTTGGCATTCTTATCTCGAAGTATGACCCAGTAACATGCTTGAAGTTTGCCACAGGTTTAATGGTGTGGTCGTTGCCTTTTGCAATTGTTCTCGCGTGTTTAACCAACAAGCTTTCTAGCGGGGTTCTTGACCGCCCTAAATGTTCACAAACCTGTTGTAGGACATTTACTGAAGGACCTCTTCTTGATACCAACAATATAGTGGGTAAAGGTTTCGAAGCTATTAAACTTGGATGGAAGGAATACTTACAGCAGCCAGTTCTTCCTGCAAGCCTAGCCTATGTCCTGCTTTATTTTAATGTTGTACTAACTCCAGGCAGTTTGATGACAGCCTATCTAACACAGAGTGGTCTAAATCCATCTATCATTGGCGGTTTCAGTGGACTATGTGCCTTTATGGGTGTCGCAGCAACATTTGTCTCGGCTAGCCTGGTCAGGCGACTTGGCATCTTAAAGGCTGGAGCAGCTGGGTTGATAATTCAGGCTTCACTTCTCACCATAGCTGTTGCTGTTTATTGTAGTAGATCTCCTTCCCAGCAAAGCCCCCTTCTTTTCTTCTTGTGCTTGATTGTATTATCAAGGTTAGGACACATGTCATACGATGTTGTGGCAGCCCAGATTCTTCAAACTGGGATACCGCCATCCAAAGTAAATATCATCGGGACAACAGAAGTTGCTGTTGCTAGTCTGGCAGAGTCTGCAATGTTGGGAGTTGCGATTATTGCCAACGATGTTTCACATTTTGGATTTCTATCGATGTTGTCACTCCTATCAGTAGTTGCGGCAGCATGGATGTTCTGCCGGTGGTTGTTGAATCCAACAGATGAACAAAGAAGTCTTTTCTCATTTGATGCCCGCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006873 GO:0006875 GO:0006879 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0019725 GO:0030003 GO:0031967 GO:0031975 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046916 GO:0048878 GO:0050801 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04216 ko04978 map04216 map04978

Pfam Domains

Protein Families

FPN1

Protein Analysis

483

Amino Acids

51.39

Weight (kDa)

7.9

Isoelectric Point (pI)

43.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FPN1	PF06963	34 - 455	4.2e-122	Ferroportin1 (FPN1)
MFS_1	PF07690	65 - 413	1.3e-08	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26820
fragaria_vesca	FvH4_6g07510 FvH4_6g07510
malus_domestica	MD04G1193000.v1.1 MD12G1205200.v1.1
prunus_persica	Prupe.6G312300_v2.0.a1
pyrus_communis	pycom04g17030 pycom12g19300
rosa_chinensis	RchiOBHm_Chr3g0457221
rosa_laevigata	RLG00000025242
rosa_multiflora	Rmu_co8479255.1_g000001 Rmu_sc0000488.1_g000027 Rmu_sc0016647.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422100
rosa_rugosa	Rorug03G0019400
rosa_samantha	Rh3AG079300 Rh3BG081000 Rh3CG081300 Rh3DG083000
rosa_wichuraiana	Rw3G006830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	94
AccII	CGCG	1 cut(s)	683
AciI	CCGC	6 cut(s)	708, 721, 960, 1226, 1370, 1444
AclWI	GGATC	1 cut(s)	282
AcsI	RAATTY	1 cut(s)	154
AcuI	CTGAAG	1 cut(s)	780
AdeI	CACNNNGTG	1 cut(s)	935
AfaI	GTAC	3 cut(s)	265, 417, 894
AfiI	CCNNNNNNNGG	3 cut(s)	94, 260, 747
AflIII	ACRYGT	1 cut(s)	1179
AgsI	TTSAA	3 cut(s)	631, 1214, 1402
AjnI	CCWGG	4 cut(s)	318, 404, 901, 1017
Alw21I	GWGCWC	1 cut(s)	364
Alw26I	GTCTC	1 cut(s)	1012
AlwI	GGATC	1 cut(s)	282
AlwNI	CAGNNNCTG	1 cut(s)	1286
AoxI	GGCC	4 cut(s)	84, 164, 207, 512
ApoI	RAATTY	1 cut(s)	154
AseI	ATTAAT	1 cut(s)	182
AspS9I	GGNCC	5 cut(s)	85, 165, 208, 251, 764
AsuHPI	GGTGA	1 cut(s)	1075
AsuII	TTCGAA	1 cut(s)	804
AsuNHI	GCTAGC	1 cut(s)	1013
AvaII	GGWCC	2 cut(s)	251, 764
BarI	GAAGNNNNNNTAC	2 cut(s)	1102, 1134
Bbv12I	GWGCWC	1 cut(s)	364
BccI	CCATC	4 cut(s)	96, 816, 955, 1237
BciT130I	CCWGG	4 cut(s)	320, 406, 903, 1019
BciVI	GTATCC	1 cut(s)	1215
BcoDI	GTCTC	1 cut(s)	1012
BfaI	CTAG	6 cut(s)	117, 125, 705, 863, 1014, 1272
BfmI	CTRYAG	2 cut(s)	435, 471
BfuI	GTATCC	1 cut(s)	1215
BglII	AGATCT	1 cut(s)	1112
Bme1390I	CCNGG	4 cut(s)	320, 406, 903, 1019
Bme18I	GGWCC	2 cut(s)	251, 764
BmgT120I	GGNCC	5 cut(s)	85, 165, 208, 251, 764
BmrFI	CCNGG	4 cut(s)	320, 406, 903, 1019
BmrI	ACTGGG	2 cut(s)	611, 1227
BmsI	GCATC	4 cut(s)	392, 590, 1044, 1429
BmtI	GCTAGC	1 cut(s)	1017
BmuI	ACTGGG	2 cut(s)	611, 1227
BoxI	GACNNNNGTC	1 cut(s)	1180
BpmI	CTGGAG	3 cut(s)	267, 885, 1068
Bpu14I	TTCGAA	1 cut(s)	804
Bsa29I	ATCGAT	1 cut(s)	1343
BsaBI	GATNNNNATC	1 cut(s)	1339
BsaJI	CCNNGG	1 cut(s)	404
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 260, 747
Bse118I	RCCGGY	1 cut(s)	1389
Bse1I	ACTGG	4 cut(s)	203, 617, 845, 1222
Bse3DI	GCAATG	1 cut(s)	1296
Bse8I	GATNNNNATC	1 cut(s)	1339
BseBI	CCWGG	4 cut(s)	320, 406, 903, 1019
BseCI	ATCGAT	1 cut(s)	1343
BseDI	CCNNGG	1 cut(s)	404
BseGI	GGATG	4 cut(s)	88, 827, 1229, 1386
BseJI	GATNNNNATC	1 cut(s)	1339
BseLI	CCNNNNNNNGG	3 cut(s)	94, 260, 747
BseMI	GCAATG	1 cut(s)	1296
BseMII	CTCAG	1 cut(s)	344
BseNI	ACTGG	4 cut(s)	203, 617, 845, 1222
BseRI	GAGGAG	1 cut(s)	71
BseYI	CCCAGC	3 cut(s)	575, 1055, 1122
BsgI	GTGCAG	1 cut(s)	512
Bsh1236I	CGCG	1 cut(s)	683
BshFI	GGCC	4 cut(s)	86, 166, 209, 514
BshVI	ATCGAT	1 cut(s)	1343
BsiHKAI	GWGCWC	1 cut(s)	364
BsiSI	CCGG	2 cut(s)	83, 1390
BslFI	GGGAC	3 cut(s)	373, 387, 1264
BslI	CCNNNNNNNGG	3 cut(s)	94, 260, 747
BsmAI	GTCTC	1 cut(s)	1012
BsmFI	GGGAC	3 cut(s)	373, 387, 1264
BsmI	GAATGC	1 cut(s)	594
BsnI	GGCC	4 cut(s)	86, 166, 209, 514
Bsp119I	TTCGAA	1 cut(s)	804
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	2 cut(s)	274, 1112
BspACI	CCGC	6 cut(s)	708, 721, 960, 1226, 1370, 1444
BspANI	GGCC	4 cut(s)	86, 166, 209, 514
BspCNI	CTCAG	1 cut(s)	343
BspDI	ATCGAT	1 cut(s)	1343
BspFNI	CGCG	1 cut(s)	683
BspMAI	CTGCAG	1 cut(s)	475
BspOI	GCTAGC	1 cut(s)	1017
BspPI	GGATC	1 cut(s)	282
BspT104I	TTCGAA	1 cut(s)	804
BsrDI	GCAATG	1 cut(s)	1296
BsrFI	RCCGGY	1 cut(s)	1389
BsrI	ACTGG	4 cut(s)	203, 617, 845, 1222
BssAI	RCCGGY	1 cut(s)	1389
BssECI	CCNNGG	1 cut(s)	404
BssMI	GATC	2 cut(s)	274, 1112
Bst2UI	CCWGG	4 cut(s)	320, 406, 903, 1019
Bst4CI	ACNGT	1 cut(s)	305
Bst6I	CTCTTC	1 cut(s)	774
BstAPI	GCANNNNNTGC	2 cut(s)	242, 1286
BstBI	TTCGAA	1 cut(s)	804
BstC8I	GCNNGC	5 cut(s)	234, 294, 859, 1015, 1444
BstDEI	CTNAG	2 cut(s)	330, 545
BstENI	CCTNNNNNAGG	1 cut(s)	745
BstF5I	GGATG	4 cut(s)	88, 827, 1229, 1386
BstFNI	CGCG	1 cut(s)	683
BstKTI	GATC	2 cut(s)	277, 1115
BstMAI	GTCTC	1 cut(s)	1012
BstMBI	GATC	2 cut(s)	274, 1112
BstMWI	GCNNNNNNNGC	8 cut(s)	83, 113, 242, 863, 1052, 1277, 1286, 1310
BstNI	CCWGG	4 cut(s)	320, 406, 903, 1019
BstNSI	RCATGY	2 cut(s)	627, 1183
BstPAI	GACNNNNGTC	1 cut(s)	1180
BstSCI	CCNGG	4 cut(s)	318, 404, 901, 1017
BstSFI	CTRYAG	2 cut(s)	435, 471
BstUI	CGCG	1 cut(s)	683
BstX2I	RGATCY	1 cut(s)	1112
BstXI	CCANNNNNNTGG	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	1112
Bsu15I	ATCGAT	1 cut(s)	1343
BsuI	GTATCC	1 cut(s)	1215
BsuRI	GGCC	4 cut(s)	86, 166, 209, 514
BsuTUI	ATCGAT	1 cut(s)	1343
BtsCI	GGATG	4 cut(s)	88, 827, 1229, 1386
BtsIMutI	CAGTG	2 cut(s)	210, 973
Cac8I	GCNNGC	5 cut(s)	234, 294, 859, 1015, 1444
CaiI	CAGNNNCTG	1 cut(s)	1286
Cfr10I	RCCGGY	1 cut(s)	1389
Cfr13I	GGNCC	5 cut(s)	85, 165, 208, 251, 764
ClaI	ATCGAT	1 cut(s)	1343
Csp6I	GTAC	3 cut(s)	264, 416, 893
CviAII	CATG	4 cut(s)	214, 624, 1180, 1377
CviQI	GTAC	3 cut(s)	264, 416, 893
DdeI	CTNAG	2 cut(s)	330, 545
DpnI	GATC	2 cut(s)	276, 1114
DpnII	GATC	2 cut(s)	274, 1112
DraIII	CACNNNGTG	1 cut(s)	935
Eam1104I	CTCTTC	1 cut(s)	774
EarI	CTCTTC	1 cut(s)	774
Eco147I	AGGCCT	1 cut(s)	514
Eco47I	GGWCC	2 cut(s)	251, 764
Eco57I	CTGAAG	1 cut(s)	780
EcoNI	CCTNNNNNAGG	1 cut(s)	745
EcoO109I	RGGNCCY	1 cut(s)	764
EcoRII	CCWGG	4 cut(s)	318, 404, 901, 1017
FaeI	CATG	4 cut(s)	217, 627, 1183, 1380
FalI	AAGNNNNNCTT	4 cut(s)	753, 785, 818, 850
FaqI	GGGAC	3 cut(s)	373, 387, 1264
FatI	CATG	4 cut(s)	213, 623, 1179, 1376
FauI	CCCGC	1 cut(s)	701
FokI	GGATG	4 cut(s)	75, 834, 1216, 1393
FspBI	CTAG	6 cut(s)	117, 125, 705, 863, 1014, 1272
GsaI	CCCAGC	3 cut(s)	579, 1059, 1126
GsuI	CTGGAG	3 cut(s)	267, 885, 1068
HaeIII	GGCC	4 cut(s)	86, 166, 209, 514
HapII	CCGG	2 cut(s)	83, 1390
Hin1II	CATG	4 cut(s)	217, 627, 1183, 1380
HindIII	AAGCTT	2 cut(s)	230, 698
HinfI	GANTC	3 cut(s)	1207, 1283, 1402
HpaII	CCGG	2 cut(s)	83, 1390
HphI	GGTGA	1 cut(s)	1075
Hpy166II	GTNNAC	4 cut(s)	266, 508, 734, 971
Hpy188I	TCNGA	2 cut(s)	255, 309
Hpy188III	TCNNGA	4 cut(s)	604, 716, 773, 1249
Hpy8I	GTNNAC	4 cut(s)	266, 508, 734, 971
HpyAV	CCTTC	6 cut(s)	387, 404, 755, 820, 1128, 1145
HpyCH4III	ACNGT	1 cut(s)	305
HpyF10VI	GCNNNNNNNGC	8 cut(s)	83, 113, 242, 863, 1052, 1277, 1286, 1310
HpyF3I	CTNAG	2 cut(s)	330, 545
Hsp92II	CATG	4 cut(s)	217, 627, 1183, 1380
Kzo9I	GATC	2 cut(s)	274, 1112
LmnI	GCTCC	3 cut(s)	58, 431, 1049
LweI	GCATC	4 cut(s)	392, 590, 1044, 1429
MaeI	CTAG	6 cut(s)	117, 125, 705, 863, 1014, 1272
MaeIII	GTNAC	2 cut(s)	619, 1350
MalI	GATC	2 cut(s)	276, 1114
MboI	GATC	2 cut(s)	274, 1112
MboII	GAAGA	4 cut(s)	761, 842, 1135, 1202
MfeI	CAATTG	1 cut(s)	672
MflI	RGATCY	1 cut(s)	1112
MhlI	GDGCHC	1 cut(s)	364
MluCI	AATT	8 cut(s)	37, 146, 154, 240, 354, 552, 672, 1065
MlyI	GAGTC	1 cut(s)	1292
MmeI	TCCRAC	1 cut(s)	1430
MnlI	CCTC	7 cut(s)	49, 178, 221, 242, 401, 435, 777
MseI	TTAA	7 cut(s)	182, 647, 689, 813, 885, 1040, 1450
MspA1I	CMGCKG	3 cut(s)	326, 1055, 1446
MspI	CCGG	2 cut(s)	83, 1390
MspR9I	CCNGG	4 cut(s)	320, 406, 903, 1019
MunI	CAATTG	1 cut(s)	672
Mva1269I	GAATGC	1 cut(s)	594
MvaI	CCWGG	4 cut(s)	320, 406, 903, 1019
MvnI	CGCG	1 cut(s)	683
MwoI	GCNNNNNNNGC	8 cut(s)	83, 113, 242, 863, 1052, 1277, 1286, 1310
NdeII	GATC	2 cut(s)	274, 1112
NheI	GCTAGC	1 cut(s)	1013
NlaIII	CATG	4 cut(s)	217, 627, 1183, 1380
NmeAIII	GCCGAG	1 cut(s)	989
NmuCI	GTSAC	1 cut(s)	1350
NspI	RCATGY	2 cut(s)	627, 1183
NspV	TTCGAA	1 cut(s)	804
PceI	AGGCCT	1 cut(s)	514
PciI	ACATGT	1 cut(s)	1179
PctI	GAATGC	1 cut(s)	594
PfeI	GAWTC	2 cut(s)	1207, 1402
PflMI	CCANNNNNTGG	1 cut(s)	94
PleI	GAGTC	1 cut(s)	1291
PpsI	GAGTC	1 cut(s)	1291
PpuMI	RGGWCCY	1 cut(s)	764
PscI	ACATGT	1 cut(s)	1179
PshAI	GACNNNNGTC	1 cut(s)	1180
PshBI	ATTAAT	1 cut(s)	182
Psp5II	RGGWCCY	1 cut(s)	764
Psp6I	CCWGG	4 cut(s)	318, 404, 901, 1017
PspFI	CCCAGC	3 cut(s)	575, 1055, 1122
PspGI	CCWGG	4 cut(s)	318, 404, 901, 1017
PspPI	GGNCC	5 cut(s)	85, 165, 208, 251, 764
PspPPI	RGGWCCY	1 cut(s)	764
PstI	CTGCAG	1 cut(s)	475
PstNI	CAGNNNCTG	1 cut(s)	1286
PsuI	RGATCY	1 cut(s)	1112
PvuII	CAGCTG	2 cut(s)	326, 1055
RsaI	GTAC	3 cut(s)	265, 417, 894
RsaNI	GTAC	3 cut(s)	264, 416, 893
SaqAI	TTAA	7 cut(s)	182, 647, 689, 813, 885, 1040, 1450
Sau3AI	GATC	2 cut(s)	274, 1112
Sau96I	GGNCC	5 cut(s)	85, 165, 208, 251, 764
SchI	GAGTC	1 cut(s)	1292
ScrFI	CCNGG	4 cut(s)	320, 406, 903, 1019
SduI	GDGCHC	1 cut(s)	364
SfaNI	GCATC	4 cut(s)	392, 590, 1044, 1429
SfcI	CTRYAG	2 cut(s)	435, 471
SfuI	TTCGAA	1 cut(s)	804
SinI	GGWCC	2 cut(s)	251, 764
Sse9I	AATT	8 cut(s)	37, 146, 154, 240, 354, 552, 672, 1065
SseBI	AGGCCT	1 cut(s)	514
SsiI	CCGC	6 cut(s)	708, 721, 960, 1226, 1370, 1444
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	6 cut(s)	117, 125, 705, 863, 1014, 1272
StuI	AGGCCT	1 cut(s)	514
StyD4I	CCNGG	4 cut(s)	318, 404, 901, 1017
TaaI	ACNGT	1 cut(s)	305
TaqI	TCGA	4 cut(s)	550, 605, 804, 1343
TasI	AATT	8 cut(s)	37, 146, 154, 240, 354, 552, 672, 1065
TatI	WGTACW	2 cut(s)	415, 892
TauI	GCSGC	1 cut(s)	1373
TfiI	GAWTC	2 cut(s)	1207, 1402
Tru1I	TTAA	7 cut(s)	182, 647, 689, 813, 885, 1040, 1450
Tru9I	TTAA	7 cut(s)	182, 647, 689, 813, 885, 1040, 1450
TscAI	CASTG	2 cut(s)	210, 973
TseFI	GTSAC	1 cut(s)	1350
Tsp45I	GTSAC	1 cut(s)	1350
TspDTI	ATGAA	2 cut(s)	400, 1428
TspGWI	ACGGA	1 cut(s)	389
TspRI	CASTG	2 cut(s)	210, 973
Van91I	CCANNNNNTGG	1 cut(s)	94
VpaK11BI	GGWCC	2 cut(s)	251, 764
VspI	ATTAAT	1 cut(s)	182
XagI	CCTNNNNNAGG	1 cut(s)	745
XapI	RAATTY	1 cut(s)	154
XceI	RCATGY	2 cut(s)	627, 1183
XcmI	CCANNNNNNNNNTGG	2 cut(s)	646, 787
XspI	CTAG	6 cut(s)	117, 125, 705, 863, 1014, 1272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.