Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000488.1

Orthogroup ID

OG0011217

Physical Location & Seq

Genomic Coordinates Reverse (-)

135375 .. 137330

Gene Structure 1956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000488.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atggctttggcttttggttcaacggttactctctctcagtattctctcaatttcaattcctctagatttcgccatcggattgcttctcgccagtggttgaatttgaaccatgtttctgttggttctcatagatttattaatgcaaggtgttcaatgaccaacactgatgtacacttcaaccatgtggctactgaaaatgagacgcaagatgaatcatcagacatagggattgagtgttcggtcccagttgttcatctcacacctgatatccttgagactgaatctttgagtttattaactgaagacacttatgtggatagtctattgataacactgcctgttttgtcaaaagaggagcagcacacccttgcagctactccggcccatccaatgggattatatgctttatatgctagttgtctagctggaaatgtggtggaacaattttggaatttcgcttggccctctgctattgcattaatatatccaagccttttgccagtggccctcattggttttgttagtaagcttgcaataattgctggaggtcctatagtgggtacacttatggatcatttccccagagtgcctgcgtataactgtctgaatattatccaggcagctgctcagttattatctgcaacaatgataattcgtgctcattcagttcccccttctgcatcgtccctccttctccgtccctggttcattgtacttgtattgagtggagctgtagagaggctatctggtgtagcattaggagttgctgcagagcgtgattgggtggtgcagttggcaggagtgaacaggcctattgcactcgcagaagcaaatgccattcttagtcgaattgacctactctgtgaggtatttgctatccttatcttttccttcaaatgtatttcagcgttgtattatatgttcattgagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006873 GO:0006875 GO:0006879 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0019725 GO:0030003 GO:0031967 GO:0031975 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046916 GO:0048878 GO:0050801 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04216 ko04978 map04216 map04978

Pfam Domains

Protein Families

FPN1

Protein Analysis

310

Amino Acids

33.85

Weight (kDa)

5.65

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26820
fragaria_vesca	FvH4_6g07510 FvH4_6g07510
malus_domestica	MD04G1193000.v1.1 MD12G1205200.v1.1
prunus_persica	Prupe.6G312300_v2.0.a1
pyrus_communis	pycom04g17030 pycom12g19300
rosa_chinensis	RchiOBHm_Chr3g0457221
rosa_laevigata	RLG00000025242
rosa_multiflora	Rmu_co8479255.1_g000001 Rmu_sc0000488.1_g000027 Rmu_sc0016647.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422100
rosa_rugosa	Rorug03G0019400
rosa_samantha	Rh3AG079300 Rh3BG081000 Rh3CG081300 Rh3DG083000
rosa_wichuraiana	Rw3G006830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	391
AclWI	GGATC	1 cut(s)	579
AcsI	RAATTY	2 cut(s)	100, 451
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	3 cut(s)	171, 562, 714
AfiI	CCNNNNNNNGG	2 cut(s)	391, 557
AgsI	TTSAA	7 cut(s)	21, 55, 100, 106, 153, 178, 895
AjnI	CCWGG	2 cut(s)	615, 701
AleI	CACNNNNGTG	1 cut(s)	311
AloI	GAACNNNNNNTCC	2 cut(s)	220, 252
AluBI	AGCT	5 cut(s)	374, 425, 529, 623, 731
AluI	AGCT	5 cut(s)	374, 425, 529, 623, 731
Alw21I	GWGCWC	1 cut(s)	661
Alw26I	GTCTC	2 cut(s)	194, 269
AlwI	GGATC	1 cut(s)	579
AoxI	GGCC	4 cut(s)	381, 461, 504, 809
ApeKI	GCWGC	5 cut(s)	358, 371, 620, 623, 767
ApoI	RAATTY	2 cut(s)	100, 451
ArsI	GACNNNNNNTTYG	2 cut(s)	268, 300
AseI	ATTAAT	2 cut(s)	138, 479
AspS9I	GGNCC	5 cut(s)	241, 382, 462, 505, 548
AvaII	GGWCC	2 cut(s)	241, 548
BbsI	GAAGAC	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	661
BbvI	GCAGC	5 cut(s)	370, 383, 610, 632, 754
BccI	CCATC	2 cut(s)	81, 393
BciT130I	CCWGG	2 cut(s)	617, 703
BcoDI	GTCTC	2 cut(s)	194, 269
BfaI	CTAG	3 cut(s)	63, 414, 422
BfmI	CTRYAG	3 cut(s)	552, 732, 768
BisI	GCNGC	5 cut(s)	359, 372, 621, 624, 768
BlsI	GCNGC	5 cut(s)	360, 373, 622, 625, 769
Bme1390I	CCNGG	2 cut(s)	617, 703
Bme18I	GGWCC	2 cut(s)	241, 548
BmgT120I	GGNCC	5 cut(s)	241, 382, 462, 505, 548
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	2 cut(s)	617, 703
BmrI	ACTGGG	1 cut(s)	239
BmsI	GCATC	1 cut(s)	689
BmuI	ACTGGG	1 cut(s)	239
BpiI	GAAGAC	1 cut(s)	309
BpmI	CTGGAG	1 cut(s)	564
BpuEI	CTTGAG	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	701
Bsc4I	CCNNNNNNNGG	2 cut(s)	391, 557
Bse1I	ACTGG	3 cut(s)	91, 245, 500
BseBI	CCWGG	2 cut(s)	617, 703
BseDI	CCNNGG	1 cut(s)	701
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	2 cut(s)	391, 557
BseMII	CTCAG	2 cut(s)	50, 641
BseNI	ACTGG	3 cut(s)	91, 245, 500
BseRI	GAGGAG	1 cut(s)	368
BseXI	GCAGC	5 cut(s)	370, 383, 610, 632, 754
BsgI	GTGCAG	1 cut(s)	809
BshFI	GGCC	4 cut(s)	383, 463, 506, 811
BsiHKAI	GWGCWC	1 cut(s)	661
BsiSI	CCGG	1 cut(s)	380
BslFI	GGGAC	3 cut(s)	227, 670, 684
BslI	CCNNNNNNNGG	2 cut(s)	391, 557
BsmAI	GTCTC	2 cut(s)	194, 269
BsmBI	CGTCTC	1 cut(s)	194
BsmFI	GGGAC	3 cut(s)	227, 670, 684
BsnI	GGCC	4 cut(s)	383, 463, 506, 811
Bsp1286I	GDGCHC	1 cut(s)	661
Bsp1407I	TGTACA	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	571
BspANI	GGCC	4 cut(s)	383, 463, 506, 811
BspCNI	CTCAG	2 cut(s)	49, 640
BspLI	GGNNCC	1 cut(s)	243
BspMAI	CTGCAG	1 cut(s)	772
BspPI	GGATC	1 cut(s)	579
BsrGI	TGTACA	1 cut(s)	169
BsrI	ACTGG	3 cut(s)	91, 245, 500
BssECI	CCNNGG	1 cut(s)	701
BssMI	GATC	1 cut(s)	571
Bst2UI	CCWGG	2 cut(s)	617, 703
Bst4CI	ACNGT	2 cut(s)	25, 602
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstAUI	TGTACA	1 cut(s)	169
BstC8I	GCNNGC	2 cut(s)	531, 591
BstDEI	CTNAG	3 cut(s)	36, 627, 842
BstF5I	GGATG	1 cut(s)	385
BstKTI	GATC	1 cut(s)	574
BstMAI	GTCTC	2 cut(s)	194, 269
BstMBI	GATC	1 cut(s)	571
BstMWI	GCNNNNNNNGC	3 cut(s)	380, 410, 539
BstNI	CCWGG	2 cut(s)	617, 703
BstSCI	CCNGG	2 cut(s)	615, 701
BstSFI	CTRYAG	3 cut(s)	552, 732, 768
BstV1I	GCAGC	5 cut(s)	370, 383, 610, 632, 754
BstV2I	GAAGAC	1 cut(s)	309
BsuRI	GGCC	4 cut(s)	383, 463, 506, 811
BtsCI	GGATG	1 cut(s)	385
BtsI	GCAGTG	1 cut(s)	332
BtsIMutI	CAGTG	4 cut(s)	98, 162, 332, 507
Cac8I	GCNNGC	2 cut(s)	531, 591
Cfr13I	GGNCC	5 cut(s)	241, 382, 462, 505, 548
CseI	GACGC	1 cut(s)	211
Csp6I	GTAC	3 cut(s)	170, 561, 713
CviAII	CATG	2 cut(s)	110, 182
CviQI	GTAC	3 cut(s)	170, 561, 713
DdeI	CTNAG	3 cut(s)	36, 627, 842
DpnI	GATC	1 cut(s)	573
DpnII	GATC	1 cut(s)	571
Eco147I	AGGCCT	1 cut(s)	811
Eco32I	GATATC	1 cut(s)	268
Eco47I	GGWCC	2 cut(s)	241, 548
Eco57I	CTGAAG	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	548
EcoRII	CCWGG	2 cut(s)	615, 701
EcoRV	GATATC	1 cut(s)	268
Esp3I	CGTCTC	1 cut(s)	194
FaeI	CATG	2 cut(s)	113, 185
FaqI	GGGAC	3 cut(s)	227, 670, 684
FatI	CATG	2 cut(s)	109, 181
Fnu4HI	GCNGC	5 cut(s)	359, 372, 621, 624, 768
FokI	GGATG	1 cut(s)	372
Fsp4HI	GCNGC	5 cut(s)	359, 372, 621, 624, 768
FspBI	CTAG	3 cut(s)	63, 414, 422
GluI	GCNGC	5 cut(s)	359, 372, 621, 624, 768
GsuI	CTGGAG	1 cut(s)	564
HaeIII	GGCC	4 cut(s)	383, 463, 506, 811
HapII	CCGG	1 cut(s)	380
HgaI	GACGC	1 cut(s)	211
Hin1II	CATG	2 cut(s)	113, 185
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	2 cut(s)	212, 281
HpaII	CCGG	1 cut(s)	380
Hpy166II	GTNNAC	3 cut(s)	172, 563, 805
Hpy188I	TCNGA	3 cut(s)	78, 220, 606
Hpy188III	TCNNGA	1 cut(s)	63
Hpy8I	GTNNAC	3 cut(s)	172, 563, 805
HpyAV	CCTTC	3 cut(s)	684, 701, 901
HpyCH4III	ACNGT	2 cut(s)	25, 602
HpyCH4V	TGCA	9 cut(s)	143, 371, 476, 533, 641, 680, 770, 790, 818
HpyF10VI	GCNNNNNNNGC	3 cut(s)	380, 410, 539
HpyF3I	CTNAG	3 cut(s)	36, 627, 842
Hsp92II	CATG	2 cut(s)	113, 185
Kzo9I	GATC	1 cut(s)	571
LmnI	GCTCC	2 cut(s)	355, 728
Lsp1109I	GCAGC	5 cut(s)	370, 383, 610, 632, 754
LweI	GCATC	1 cut(s)	689
MaeI	CTAG	3 cut(s)	63, 414, 422
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	1 cut(s)	573
MboI	GATC	1 cut(s)	571
MboII	GAAGA	1 cut(s)	314
MhlI	GDGCHC	1 cut(s)	661
MluCI	AATT	8 cut(s)	49, 55, 100, 443, 451, 537, 651, 849
MnlI	CCTC	8 cut(s)	70, 346, 475, 518, 539, 698, 732, 859
MseI	TTAA	3 cut(s)	138, 296, 479
MslI	CAYNNNNRTG	1 cut(s)	311
MspA1I	CMGCKG	1 cut(s)	623
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	2 cut(s)	617, 703
MvaI	CCWGG	2 cut(s)	617, 703
MwoI	GCNNNNNNNGC	3 cut(s)	380, 410, 539
NdeII	GATC	1 cut(s)	571
NlaIII	CATG	2 cut(s)	113, 185
NlaIV	GGNNCC	1 cut(s)	243
OliI	CACNNNNGTG	1 cut(s)	311
PceI	AGGCCT	1 cut(s)	811
PfeI	GAWTC	2 cut(s)	212, 281
PflMI	CCANNNNNTGG	1 cut(s)	391
PkrI	GCNGC	5 cut(s)	360, 373, 622, 625, 769
PpuMI	RGGWCCY	1 cut(s)	548
PshBI	ATTAAT	2 cut(s)	138, 479
Psp5II	RGGWCCY	1 cut(s)	548
Psp6I	CCWGG	2 cut(s)	615, 701
PspGI	CCWGG	2 cut(s)	615, 701
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	5 cut(s)	241, 382, 462, 505, 548
PspPPI	RGGWCCY	1 cut(s)	548
PsrI	GAACNNNNNNTAC	1 cut(s)	905
PstI	CTGCAG	1 cut(s)	772
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	3 cut(s)	171, 562, 714
RsaNI	GTAC	3 cut(s)	170, 561, 713
RseI	CAYNNNNRTG	1 cut(s)	311
SaqAI	TTAA	3 cut(s)	138, 296, 479
SatI	GCNGC	5 cut(s)	359, 372, 621, 624, 768
Sau3AI	GATC	1 cut(s)	571
Sau96I	GGNCC	5 cut(s)	241, 382, 462, 505, 548
ScrFI	CCNGG	2 cut(s)	617, 703
SduI	GDGCHC	1 cut(s)	661
SfaNI	GCATC	1 cut(s)	689
SfcI	CTRYAG	3 cut(s)	552, 732, 768
SinI	GGWCC	2 cut(s)	241, 548
SmiMI	CAYNNNNRTG	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	8 cut(s)	49, 55, 100, 443, 451, 537, 651, 849
SseBI	AGGCCT	1 cut(s)	811
SspI	AATATT	1 cut(s)	610
SspMI	CTAG	3 cut(s)	63, 414, 422
StuI	AGGCCT	1 cut(s)	811
StyD4I	CCNGG	2 cut(s)	615, 701
TaaI	ACNGT	2 cut(s)	25, 602
TaqI	TCGA	1 cut(s)	847
TaqII	GACCGA	1 cut(s)	229
TasI	AATT	8 cut(s)	49, 55, 100, 443, 451, 537, 651, 849
TatI	WGTACW	2 cut(s)	169, 712
TfiI	GAWTC	2 cut(s)	212, 281
Tru1I	TTAA	3 cut(s)	138, 296, 479
Tru9I	TTAA	3 cut(s)	138, 296, 479
TscAI	CASTG	4 cut(s)	98, 169, 339, 507
TseI	GCWGC	5 cut(s)	358, 371, 620, 623, 767
TspDTI	ATGAA	4 cut(s)	225, 242, 697, 913
TspGWI	ACGGA	1 cut(s)	686
TspRI	CASTG	4 cut(s)	98, 169, 339, 507
Van91I	CCANNNNNTGG	1 cut(s)	391
VpaK11BI	GGWCC	2 cut(s)	241, 548
VspI	ATTAAT	2 cut(s)	138, 479
XapI	RAATTY	2 cut(s)	100, 451
XbaI	TCTAGA	1 cut(s)	62
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XspI	CTAG	3 cut(s)	63, 414, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.