Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0011217

Physical Location & Seq

Genomic Coordinates Reverse (-)

6326114 .. 6331456

Gene Structure 5343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG081000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGCTTTGGCTTTTGGTTCAACGGTTACTCTCTCCCAGTATTCTCTCAATTTCAATTCCTCTAGATTTCGCCATCGGATTGCTTCTCGCCAATGGTTGAATTTGAACCATGTTTCTGTTGGTTCTCATAGATTTATTAATGCAAGGTGTTCAATGACCAACACCGATGTACACTTCAACCATGTGGCTACTGAAAATGAGACGCAAGATGAATCATCAGACATAGGGATTGAGTGTTCGGTCCCAGTTGTTCATCTCACACCTGATATCCTTGAGACTGAATCTTTGAGTTTATTAACTGAAGACACTTATGTGGATAGTCTATTGATAACACTGCCTGTTTTGTCAAAAGAGGAGCAGCACACCCTTGCAGCTACTCCGGCCCATCCAATGGGATTATATGCTTTATATGCTAGTTGTCTAGCTGGAAATGTGGTGGAACAATTTTGGAATTTCGCTTGGCCCTCTGCTATTGCATTAATATATCCAAGCCTTTTGCCAGTGGCCCTCATGGGTTTTGTTAGTAAGCTTGCAATAATTGCTGGAGGTCCTATAGTGGGTACACTTATGGATCATTTCCCCAGAGTGCCTGCGTATAACTGTCTGAATATTATCCAGGCAGCTGCTCAGTTAGTATCTGCAACAATGATAATTCGTGCTCATTCAGTTCCCCTTTCTGCATCGTCCCTCCTTCTCCGTCCCTGGTTCATTGTACTTGTATTGAGTGGAGCTGTAGAGAGGCTATCTGGTGTAGCATTAGGAGTTGCTGCAGAGCGTGATTGGGTGGTGCAGTTGGCAGGAGTGAACAGGCCTATTGCACTCGCAGAAGCAAATGCCATTCTTAGTCGAATTGACCTACTCTGTGAGATAGCTGGGGCATCACTATTTGGCATTCTTATCTCGAAGTATGACCCAGTAACATGCTTGAAGTTTGCCACAGGTTTAATGGTGTGGTCGTTGCCTTTTGCAATTGTTCTCGCGTGTTTAACCAACAAGCTTTCTAGCGGGGTTCTTGACCGCCCTAAATGTTCACAAACCTGTTGTAGGACATTTACTGAAGGACCTCTTCTTGATACCAACAATATAGTGGGTAAAGGTTTCGAAGCTATTAAACTTGGATGGAAGGAATACTTACAGCAGCCAGTTCTTCCTGCAAGCCTAGCCTATGTCCTGCTTTATTTTAATGTTGTACTAACTCCAGGCAGTTTGATGACAGCCTATCTAACACAGAGTGGTATTGTGATACTTTTTCTTCTTTTACCTTTAAATTCTCTGGAAAAGACCTTTACTTCAATAAAATTGAAACCCCATGAGGGAATGATACACCTCAGCCAAACTAGATCTGCTCAACATGCATTTTGCAGTCAGACAGAATGTAGTCATGTACATCGGAGGTGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006873 GO:0006875 GO:0006879 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0019725 GO:0030003 GO:0031967 GO:0031975 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046916 GO:0048878 GO:0050801 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04216 ko04978 map04216 map04978

Pfam Domains

Protein Families

FPN1

Protein Analysis

467

Amino Acids

50.98

Weight (kDa)

6.72

Isoelectric Point (pI)

39.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FPN1	PF06963	133 - 414	2.9e-77	Ferroportin1 (FPN1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26820
fragaria_vesca	FvH4_6g07510 FvH4_6g07510
malus_domestica	MD04G1193000.v1.1 MD12G1205200.v1.1
prunus_persica	Prupe.6G312300_v2.0.a1
pyrus_communis	pycom04g17030 pycom12g19300
rosa_chinensis	RchiOBHm_Chr3g0457221
rosa_laevigata	RLG00000025242
rosa_multiflora	Rmu_co8479255.1_g000001 Rmu_sc0000488.1_g000027 Rmu_sc0016647.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422100
rosa_rugosa	Rorug03G0019400
rosa_samantha	Rh3AG079300 Rh3BG081000 Rh3CG081300 Rh3DG083000
rosa_wichuraiana	Rw3G006830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	391
AccII	CGCG	1 cut(s)	980
AciI	CCGC	2 cut(s)	1005, 1018
AclWI	GGATC	1 cut(s)	579
AcsI	RAATTY	3 cut(s)	100, 451, 1267
AcuI	CTGAAG	2 cut(s)	321, 1077
AdeI	CACNNNGTG	1 cut(s)	1232
AfaI	GTAC	5 cut(s)	171, 562, 714, 1191, 1386
AfiI	CCNNNNNNNGG	4 cut(s)	391, 557, 1044, 1313
AgsI	TTSAA	9 cut(s)	21, 55, 100, 106, 153, 178, 928, 1293, 1303
AjnI	CCWGG	3 cut(s)	615, 701, 1198
AleI	CACNNNNGTG	1 cut(s)	311
AloI	GAACNNNNNNTCC	2 cut(s)	220, 252
AluBI	AGCT	8 cut(s)	374, 425, 529, 623, 731, 872, 997, 1106
AluI	AGCT	8 cut(s)	374, 425, 529, 623, 731, 872, 997, 1106
Alw21I	GWGCWC	1 cut(s)	661
Alw26I	GTCTC	2 cut(s)	194, 269
AlwI	GGATC	1 cut(s)	579
AoxI	GGCC	4 cut(s)	381, 461, 504, 809
ApeKI	GCWGC	6 cut(s)	358, 371, 620, 623, 767, 1138
ApoI	RAATTY	3 cut(s)	100, 451, 1267
ArsI	GACNNNNNNTTYG	2 cut(s)	268, 300
AseI	ATTAAT	2 cut(s)	138, 479
AspS9I	GGNCC	6 cut(s)	241, 382, 462, 505, 548, 1061
AsuII	TTCGAA	1 cut(s)	1101
AvaII	GGWCC	3 cut(s)	241, 548, 1061
BbsI	GAAGAC	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	661
BbvCI	CCTCAGC	1 cut(s)	1328
BbvI	GCAGC	6 cut(s)	370, 383, 610, 632, 754, 1150
BccI	CCATC	3 cut(s)	81, 393, 1113
BciT130I	CCWGG	3 cut(s)	617, 703, 1200
BcoDI	GTCTC	2 cut(s)	194, 269
BfaI	CTAG	6 cut(s)	63, 414, 422, 1002, 1160, 1338
BfmI	CTRYAG	3 cut(s)	552, 732, 768
BglII	AGATCT	1 cut(s)	1340
BisI	GCNGC	6 cut(s)	359, 372, 621, 624, 768, 1139
BlsI	GCNGC	6 cut(s)	360, 373, 622, 625, 769, 1140
Bme1390I	CCNGG	3 cut(s)	617, 703, 1200
Bme18I	GGWCC	3 cut(s)	241, 548, 1061
BmgT120I	GGNCC	6 cut(s)	241, 382, 462, 505, 548, 1061
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	3 cut(s)	617, 703, 1200
BmrI	ACTGGG	3 cut(s)	31, 239, 908
BmsI	GCATC	2 cut(s)	689, 887
BmuI	ACTGGG	3 cut(s)	31, 239, 908
BpiI	GAAGAC	1 cut(s)	309
BpmI	CTGGAG	2 cut(s)	564, 1182
Bpu10I	CCTNAGC	1 cut(s)	1328
Bpu14I	TTCGAA	1 cut(s)	1101
BpuEI	CTTGAG	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	701
Bsc4I	CCNNNNNNNGG	4 cut(s)	391, 557, 1044, 1313
Bse1I	ACTGG	5 cut(s)	37, 245, 500, 914, 1142
BseBI	CCWGG	3 cut(s)	617, 703, 1200
BseDI	CCNNGG	1 cut(s)	701
BseGI	GGATG	2 cut(s)	385, 1124
BseLI	CCNNNNNNNGG	4 cut(s)	391, 557, 1044, 1313
BseMII	CTCAG	2 cut(s)	641, 1342
BseNI	ACTGG	5 cut(s)	37, 245, 500, 914, 1142
BseRI	GAGGAG	1 cut(s)	368
BseXI	GCAGC	6 cut(s)	370, 383, 610, 632, 754, 1150
BseYI	CCCAGC	1 cut(s)	872
BsgI	GTGCAG	1 cut(s)	809
Bsh1236I	CGCG	1 cut(s)	980
BshFI	GGCC	4 cut(s)	383, 463, 506, 811
BsiHKAI	GWGCWC	1 cut(s)	661
BsiSI	CCGG	1 cut(s)	380
BslFI	GGGAC	3 cut(s)	227, 670, 684
BslI	CCNNNNNNNGG	4 cut(s)	391, 557, 1044, 1313
BsmAI	GTCTC	2 cut(s)	194, 269
BsmBI	CGTCTC	1 cut(s)	194
BsmFI	GGGAC	3 cut(s)	227, 670, 684
BsmI	GAATGC	1 cut(s)	891
BsnI	GGCC	4 cut(s)	383, 463, 506, 811
Bsp119I	TTCGAA	1 cut(s)	1101
Bsp1286I	GDGCHC	1 cut(s)	661
Bsp1407I	TGTACA	2 cut(s)	169, 1384
Bsp143I	GATC	2 cut(s)	571, 1340
BspACI	CCGC	2 cut(s)	1005, 1018
BspANI	GGCC	4 cut(s)	383, 463, 506, 811
BspCNI	CTCAG	2 cut(s)	640, 1341
BspFNI	CGCG	1 cut(s)	980
BspLI	GGNNCC	1 cut(s)	243
BspMAI	CTGCAG	1 cut(s)	772
BspPI	GGATC	1 cut(s)	579
BspT104I	TTCGAA	1 cut(s)	1101
BsrGI	TGTACA	2 cut(s)	169, 1384
BsrI	ACTGG	5 cut(s)	37, 245, 500, 914, 1142
BssECI	CCNNGG	1 cut(s)	701
BssMI	GATC	2 cut(s)	571, 1340
Bst2UI	CCWGG	3 cut(s)	617, 703, 1200
Bst4CI	ACNGT	2 cut(s)	25, 602
Bst6I	CTCTTC	1 cut(s)	1071
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstAUI	TGTACA	2 cut(s)	169, 1384
BstBI	TTCGAA	1 cut(s)	1101
BstC8I	GCNNGC	3 cut(s)	531, 591, 1156
BstDEI	CTNAG	3 cut(s)	627, 842, 1328
BstENI	CCTNNNNNAGG	1 cut(s)	1042
BstF5I	GGATG	2 cut(s)	385, 1124
BstFNI	CGCG	1 cut(s)	980
BstKTI	GATC	2 cut(s)	574, 1343
BstMAI	GTCTC	2 cut(s)	194, 269
BstMBI	GATC	2 cut(s)	571, 1340
BstMWI	GCNNNNNNNGC	5 cut(s)	380, 410, 539, 1160, 1352
BstNI	CCWGG	3 cut(s)	617, 703, 1200
BstNSI	RCATGY	2 cut(s)	924, 1355
BstSCI	CCNGG	3 cut(s)	615, 701, 1198
BstSFI	CTRYAG	3 cut(s)	552, 732, 768
BstUI	CGCG	1 cut(s)	980
BstV1I	GCAGC	6 cut(s)	370, 383, 610, 632, 754, 1150
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	1 cut(s)	1340
BstYI	RGATCY	1 cut(s)	1340
BsuRI	GGCC	4 cut(s)	383, 463, 506, 811
BtsCI	GGATG	2 cut(s)	385, 1124
BtsI	GCAGTG	1 cut(s)	332
BtsIMutI	CAGTG	2 cut(s)	332, 507
Cac8I	GCNNGC	3 cut(s)	531, 591, 1156
Cfr13I	GGNCC	6 cut(s)	241, 382, 462, 505, 548, 1061
CseI	GACGC	1 cut(s)	211
Csp6I	GTAC	5 cut(s)	170, 561, 713, 1190, 1385
CviAII	CATG	7 cut(s)	110, 182, 511, 921, 1310, 1352, 1382
CviQI	GTAC	5 cut(s)	170, 561, 713, 1190, 1385
DdeI	CTNAG	3 cut(s)	627, 842, 1328
DpnI	GATC	2 cut(s)	573, 1342
DpnII	GATC	2 cut(s)	571, 1340
DraI	TTTAAA	1 cut(s)	1266
DraIII	CACNNNGTG	1 cut(s)	1232
Eam1104I	CTCTTC	1 cut(s)	1071
EarI	CTCTTC	1 cut(s)	1071
Eco147I	AGGCCT	1 cut(s)	811
Eco32I	GATATC	1 cut(s)	268
Eco47I	GGWCC	3 cut(s)	241, 548, 1061
Eco57I	CTGAAG	2 cut(s)	321, 1077
EcoNI	CCTNNNNNAGG	1 cut(s)	1042
EcoO109I	RGGNCCY	2 cut(s)	548, 1061
EcoRII	CCWGG	3 cut(s)	615, 701, 1198
EcoRV	GATATC	1 cut(s)	268
EcoT22I	ATGCAT	1 cut(s)	1357
Esp3I	CGTCTC	1 cut(s)	194
FaeI	CATG	7 cut(s)	113, 185, 514, 924, 1313, 1355, 1385
FalI	AAGNNNNNCTT	4 cut(s)	1050, 1082, 1115, 1147
FaqI	GGGAC	3 cut(s)	227, 670, 684
FatI	CATG	7 cut(s)	109, 181, 510, 920, 1309, 1351, 1381
FauI	CCCGC	1 cut(s)	998
Fnu4HI	GCNGC	6 cut(s)	359, 372, 621, 624, 768, 1139
FokI	GGATG	2 cut(s)	372, 1131
Fsp4HI	GCNGC	6 cut(s)	359, 372, 621, 624, 768, 1139
FspBI	CTAG	6 cut(s)	63, 414, 422, 1002, 1160, 1338
GluI	GCNGC	6 cut(s)	359, 372, 621, 624, 768, 1139
GsaI	CCCAGC	1 cut(s)	876
GsuI	CTGGAG	2 cut(s)	564, 1182
HaeIII	GGCC	4 cut(s)	383, 463, 506, 811
HapII	CCGG	1 cut(s)	380
HgaI	GACGC	1 cut(s)	211
Hin1II	CATG	7 cut(s)	113, 185, 514, 924, 1313, 1355, 1385
HindIII	AAGCTT	2 cut(s)	527, 995
HinfI	GANTC	2 cut(s)	212, 281
HpaII	CCGG	1 cut(s)	380
Hpy166II	GTNNAC	4 cut(s)	172, 563, 805, 1031
Hpy188I	TCNGA	5 cut(s)	78, 220, 606, 1368, 1392
Hpy188III	TCNNGA	5 cut(s)	63, 901, 1013, 1070, 1274
Hpy8I	GTNNAC	4 cut(s)	172, 563, 805, 1031
HpyAV	CCTTC	3 cut(s)	701, 1052, 1117
HpyCH4III	ACNGT	2 cut(s)	25, 602
HpyF10VI	GCNNNNNNNGC	5 cut(s)	380, 410, 539, 1160, 1352
HpyF3I	CTNAG	3 cut(s)	627, 842, 1328
Hsp92II	CATG	7 cut(s)	113, 185, 514, 924, 1313, 1355, 1385
Kzo9I	GATC	2 cut(s)	571, 1340
LmnI	GCTCC	2 cut(s)	355, 728
Lsp1109I	GCAGC	6 cut(s)	370, 383, 610, 632, 754, 1150
LweI	GCATC	2 cut(s)	689, 887
MaeI	CTAG	6 cut(s)	63, 414, 422, 1002, 1160, 1338
MaeIII	GTNAC	2 cut(s)	25, 916
MalI	GATC	2 cut(s)	573, 1342
MboI	GATC	2 cut(s)	571, 1340
MboII	GAAGA	4 cut(s)	314, 1058, 1139, 1244
MfeI	CAATTG	1 cut(s)	969
MflI	RGATCY	1 cut(s)	1340
MhlI	GDGCHC	1 cut(s)	661
Mph1103I	ATGCAT	1 cut(s)	1357
MseI	TTAA	8 cut(s)	138, 296, 479, 944, 986, 1110, 1182, 1265
MslI	CAYNNNNRTG	1 cut(s)	311
MspA1I	CMGCKG	1 cut(s)	623
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	3 cut(s)	617, 703, 1200
MunI	CAATTG	1 cut(s)	969
Mva1269I	GAATGC	1 cut(s)	891
MvaI	CCWGG	3 cut(s)	617, 703, 1200
MvnI	CGCG	1 cut(s)	980
MwoI	GCNNNNNNNGC	5 cut(s)	380, 410, 539, 1160, 1352
NdeII	GATC	2 cut(s)	571, 1340
NlaIII	CATG	7 cut(s)	113, 185, 514, 924, 1313, 1355, 1385
NlaIV	GGNNCC	1 cut(s)	243
NsiI	ATGCAT	1 cut(s)	1357
NspI	RCATGY	2 cut(s)	924, 1355
NspV	TTCGAA	1 cut(s)	1101
OliI	CACNNNNGTG	1 cut(s)	311
PceI	AGGCCT	1 cut(s)	811
PctI	GAATGC	1 cut(s)	891
PfeI	GAWTC	2 cut(s)	212, 281
PflMI	CCANNNNNTGG	1 cut(s)	391
PkrI	GCNGC	6 cut(s)	360, 373, 622, 625, 769, 1140
PpuMI	RGGWCCY	2 cut(s)	548, 1061
PshBI	ATTAAT	2 cut(s)	138, 479
Psp5II	RGGWCCY	2 cut(s)	548, 1061
Psp6I	CCWGG	3 cut(s)	615, 701, 1198
PspFI	CCCAGC	1 cut(s)	872
PspGI	CCWGG	3 cut(s)	615, 701, 1198
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	6 cut(s)	241, 382, 462, 505, 548, 1061
PspPPI	RGGWCCY	2 cut(s)	548, 1061
PstI	CTGCAG	1 cut(s)	772
PsuI	RGATCY	1 cut(s)	1340
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	5 cut(s)	171, 562, 714, 1191, 1386
RsaNI	GTAC	5 cut(s)	170, 561, 713, 1190, 1385
RseI	CAYNNNNRTG	1 cut(s)	311
SaqAI	TTAA	8 cut(s)	138, 296, 479, 944, 986, 1110, 1182, 1265
SatI	GCNGC	6 cut(s)	359, 372, 621, 624, 768, 1139
Sau3AI	GATC	2 cut(s)	571, 1340
Sau96I	GGNCC	6 cut(s)	241, 382, 462, 505, 548, 1061
ScrFI	CCNGG	3 cut(s)	617, 703, 1200
SduI	GDGCHC	1 cut(s)	661
SfaNI	GCATC	2 cut(s)	689, 887
SfcI	CTRYAG	3 cut(s)	552, 732, 768
SfuI	TTCGAA	1 cut(s)	1101
SinI	GGWCC	3 cut(s)	241, 548, 1061
SmiMI	CAYNNNNRTG	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
SseBI	AGGCCT	1 cut(s)	811
SsiI	CCGC	2 cut(s)	1005, 1018
SspI	AATATT	1 cut(s)	610
SspMI	CTAG	6 cut(s)	63, 414, 422, 1002, 1160, 1338
StuI	AGGCCT	1 cut(s)	811
StyD4I	CCNGG	3 cut(s)	615, 701, 1198
TaaI	ACNGT	2 cut(s)	25, 602
TaqI	TCGA	3 cut(s)	847, 902, 1101
TaqII	GACCGA	1 cut(s)	229
TatI	WGTACW	4 cut(s)	169, 712, 1189, 1384
TfiI	GAWTC	2 cut(s)	212, 281
Tru1I	TTAA	8 cut(s)	138, 296, 479, 944, 986, 1110, 1182, 1265
Tru9I	TTAA	8 cut(s)	138, 296, 479, 944, 986, 1110, 1182, 1265
TscAI	CASTG	2 cut(s)	339, 507
TseI	GCWGC	6 cut(s)	358, 371, 620, 623, 767, 1138
TspDTI	ATGAA	3 cut(s)	225, 242, 697
TspGWI	ACGGA	1 cut(s)	686
TspRI	CASTG	2 cut(s)	339, 507
Van91I	CCANNNNNTGG	1 cut(s)	391
VpaK11BI	GGWCC	3 cut(s)	241, 548, 1061
VspI	ATTAAT	2 cut(s)	138, 479
XagI	CCTNNNNNAGG	1 cut(s)	1042
XapI	RAATTY	3 cut(s)	100, 451, 1267
XbaI	TCTAGA	1 cut(s)	62
XceI	RCATGY	2 cut(s)	924, 1355
XcmI	CCANNNNNNNNNTGG	3 cut(s)	116, 943, 1084
XspI	CTAG	6 cut(s)	63, 414, 422, 1002, 1160, 1338
Zsp2I	ATGCAT	1 cut(s)	1357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.