Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8479255.1

Orthogroup ID

OG0011217

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2188

Gene Structure 2188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8479255.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 868 bp

atttcgccatcggattgcttctcgccaatggttgaatttgaaccatgtttctgttggttctcatagatttattaatgcaaggtgttcaatgaccaacactgatgtacacttcaaccatgtggctactgaaaatgagacgcaagatgaatcatcagacatagggattgagtgttcggtcccagttgttcatctcacacctgatatccttgagactgaatctttgagtttattaactgaagacacttatgtggatagtctattgataacactgcctgttttgtcaaaagaggagcagcacacccttgcagctactccggcccatccaatgggattatatgctttatatgctagttgtctagctggaaatgtggtggaacaattttggaatttcgcttggccctctgctattgcattaatatatccaagccttttgccagtggccctcattggttttgttagtaagcttgcaataattgctggaggtcctatagtgggtacacttatggatcatttccccagagtgcctgcgtataactgtctgaatattatccaggcagctgctcagttattatctgcaacaatgataattcgtgctcattcagttcccccttctgcatcgtccctccttctccgtccctggttcattgtacttgtattgagtggagctgtagagaggctatctggtgtagcattaggagttgctgcagagcgtgattgggtggtgcagttggcaggagtgaacaggcctattgcactcgcagaagcaaatgccattcttagtcgaattgacctactctgtgaggtatttgctatccttatcttttccttcaaatgtatttcagcgttgtattatatgttcattgagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006873 GO:0006875 GO:0006879 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0019725 GO:0030003 GO:0031967 GO:0031975 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046916 GO:0048878 GO:0050801 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04216 ko04978 map04216 map04978

Pfam Domains

Protein Families

FPN1

Protein Analysis

288

Amino Acids

31.47

Weight (kDa)

5.52

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26820
fragaria_vesca	FvH4_6g07510 FvH4_6g07510
malus_domestica	MD04G1193000.v1.1 MD12G1205200.v1.1
prunus_persica	Prupe.6G312300_v2.0.a1
pyrus_communis	pycom04g17030 pycom12g19300
rosa_chinensis	RchiOBHm_Chr3g0457221
rosa_laevigata	RLG00000025242
rosa_multiflora	Rmu_co8479255.1_g000001 Rmu_sc0000488.1_g000027 Rmu_sc0016647.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422100
rosa_rugosa	Rorug03G0019400
rosa_samantha	Rh3AG079300 Rh3BG081000 Rh3CG081300 Rh3DG083000
rosa_wichuraiana	Rw3G006830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	326
AclWI	GGATC	1 cut(s)	514
AcsI	RAATTY	2 cut(s)	35, 386
AcuI	CTGAAG	1 cut(s)	256
AfaI	GTAC	3 cut(s)	106, 497, 649
AfiI	CCNNNNNNNGG	2 cut(s)	326, 492
AgsI	TTSAA	5 cut(s)	35, 41, 88, 113, 830
AjnI	CCWGG	2 cut(s)	550, 636
AleI	CACNNNNGTG	1 cut(s)	246
AloI	GAACNNNNNNTCC	2 cut(s)	155, 187
AluBI	AGCT	5 cut(s)	309, 360, 464, 558, 666
AluI	AGCT	5 cut(s)	309, 360, 464, 558, 666
Alw21I	GWGCWC	1 cut(s)	596
Alw26I	GTCTC	2 cut(s)	129, 204
AlwI	GGATC	1 cut(s)	514
AoxI	GGCC	4 cut(s)	316, 396, 439, 744
ApeKI	GCWGC	5 cut(s)	293, 306, 555, 558, 702
ApoI	RAATTY	2 cut(s)	35, 386
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
AseI	ATTAAT	2 cut(s)	73, 414
AspS9I	GGNCC	5 cut(s)	176, 317, 397, 440, 483
AvaII	GGWCC	2 cut(s)	176, 483
BbsI	GAAGAC	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	596
BbvI	GCAGC	5 cut(s)	305, 318, 545, 567, 689
BccI	CCATC	2 cut(s)	16, 328
BciT130I	CCWGG	2 cut(s)	552, 638
BcoDI	GTCTC	2 cut(s)	129, 204
BfaI	CTAG	2 cut(s)	349, 357
BfmI	CTRYAG	3 cut(s)	487, 667, 703
BisI	GCNGC	5 cut(s)	294, 307, 556, 559, 703
BlsI	GCNGC	5 cut(s)	295, 308, 557, 560, 704
Bme1390I	CCNGG	2 cut(s)	552, 638
Bme18I	GGWCC	2 cut(s)	176, 483
BmgT120I	GGNCC	5 cut(s)	176, 317, 397, 440, 483
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	2 cut(s)	552, 638
BmrI	ACTGGG	1 cut(s)	174
BmsI	GCATC	1 cut(s)	624
BmuI	ACTGGG	1 cut(s)	174
BpiI	GAAGAC	1 cut(s)	244
BpmI	CTGGAG	1 cut(s)	499
BpuEI	CTTGAG	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	636
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 492
Bse1I	ACTGG	2 cut(s)	180, 435
BseBI	CCWGG	2 cut(s)	552, 638
BseDI	CCNNGG	1 cut(s)	636
BseGI	GGATG	1 cut(s)	320
BseLI	CCNNNNNNNGG	2 cut(s)	326, 492
BseMII	CTCAG	1 cut(s)	576
BseNI	ACTGG	2 cut(s)	180, 435
BseRI	GAGGAG	1 cut(s)	303
BseXI	GCAGC	5 cut(s)	305, 318, 545, 567, 689
BsgI	GTGCAG	1 cut(s)	744
BshFI	GGCC	4 cut(s)	318, 398, 441, 746
BsiHKAI	GWGCWC	1 cut(s)	596
BsiSI	CCGG	1 cut(s)	315
BslFI	GGGAC	3 cut(s)	162, 605, 619
BslI	CCNNNNNNNGG	2 cut(s)	326, 492
BsmAI	GTCTC	2 cut(s)	129, 204
BsmBI	CGTCTC	1 cut(s)	129
BsmFI	GGGAC	3 cut(s)	162, 605, 619
BsnI	GGCC	4 cut(s)	318, 398, 441, 746
Bsp1286I	GDGCHC	1 cut(s)	596
Bsp1407I	TGTACA	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	506
BspANI	GGCC	4 cut(s)	318, 398, 441, 746
BspCNI	CTCAG	1 cut(s)	575
BspLI	GGNNCC	1 cut(s)	178
BspMAI	CTGCAG	1 cut(s)	707
BspPI	GGATC	1 cut(s)	514
BsrGI	TGTACA	1 cut(s)	104
BsrI	ACTGG	2 cut(s)	180, 435
BssECI	CCNNGG	1 cut(s)	636
BssMI	GATC	1 cut(s)	506
Bst2UI	CCWGG	2 cut(s)	552, 638
Bst4CI	ACNGT	1 cut(s)	537
BstAPI	GCANNNNNTGC	1 cut(s)	474
BstAUI	TGTACA	1 cut(s)	104
BstC8I	GCNNGC	2 cut(s)	466, 526
BstDEI	CTNAG	2 cut(s)	562, 777
BstF5I	GGATG	1 cut(s)	320
BstKTI	GATC	1 cut(s)	509
BstMAI	GTCTC	2 cut(s)	129, 204
BstMBI	GATC	1 cut(s)	506
BstMWI	GCNNNNNNNGC	3 cut(s)	315, 345, 474
BstNI	CCWGG	2 cut(s)	552, 638
BstSCI	CCNGG	2 cut(s)	550, 636
BstSFI	CTRYAG	3 cut(s)	487, 667, 703
BstV1I	GCAGC	5 cut(s)	305, 318, 545, 567, 689
BstV2I	GAAGAC	1 cut(s)	244
BsuRI	GGCC	4 cut(s)	318, 398, 441, 746
BtsCI	GGATG	1 cut(s)	320
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	3 cut(s)	97, 267, 442
Cac8I	GCNNGC	2 cut(s)	466, 526
Cfr13I	GGNCC	5 cut(s)	176, 317, 397, 440, 483
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	3 cut(s)	105, 496, 648
CviAII	CATG	2 cut(s)	45, 117
CviQI	GTAC	3 cut(s)	105, 496, 648
DdeI	CTNAG	2 cut(s)	562, 777
DpnI	GATC	1 cut(s)	508
DpnII	GATC	1 cut(s)	506
Eco147I	AGGCCT	1 cut(s)	746
Eco32I	GATATC	1 cut(s)	203
Eco47I	GGWCC	2 cut(s)	176, 483
Eco57I	CTGAAG	1 cut(s)	256
EcoO109I	RGGNCCY	1 cut(s)	483
EcoRII	CCWGG	2 cut(s)	550, 636
EcoRV	GATATC	1 cut(s)	203
Esp3I	CGTCTC	1 cut(s)	129
FaeI	CATG	2 cut(s)	48, 120
FaqI	GGGAC	3 cut(s)	162, 605, 619
FatI	CATG	2 cut(s)	44, 116
Fnu4HI	GCNGC	5 cut(s)	294, 307, 556, 559, 703
FokI	GGATG	1 cut(s)	307
Fsp4HI	GCNGC	5 cut(s)	294, 307, 556, 559, 703
FspBI	CTAG	2 cut(s)	349, 357
GluI	GCNGC	5 cut(s)	294, 307, 556, 559, 703
GsuI	CTGGAG	1 cut(s)	499
HaeIII	GGCC	4 cut(s)	318, 398, 441, 746
HapII	CCGG	1 cut(s)	315
HgaI	GACGC	1 cut(s)	146
Hin1II	CATG	2 cut(s)	48, 120
HindIII	AAGCTT	1 cut(s)	462
HinfI	GANTC	2 cut(s)	147, 216
HpaII	CCGG	1 cut(s)	315
Hpy166II	GTNNAC	3 cut(s)	107, 498, 740
Hpy188I	TCNGA	3 cut(s)	13, 155, 541
Hpy8I	GTNNAC	3 cut(s)	107, 498, 740
HpyAV	CCTTC	3 cut(s)	619, 636, 836
HpyCH4III	ACNGT	1 cut(s)	537
HpyCH4V	TGCA	9 cut(s)	78, 306, 411, 468, 576, 615, 705, 725, 753
HpyF10VI	GCNNNNNNNGC	3 cut(s)	315, 345, 474
HpyF3I	CTNAG	2 cut(s)	562, 777
Hsp92II	CATG	2 cut(s)	48, 120
Kzo9I	GATC	1 cut(s)	506
LmnI	GCTCC	2 cut(s)	290, 663
Lsp1109I	GCAGC	5 cut(s)	305, 318, 545, 567, 689
LweI	GCATC	1 cut(s)	624
MaeI	CTAG	2 cut(s)	349, 357
MalI	GATC	1 cut(s)	508
MboI	GATC	1 cut(s)	506
MboII	GAAGA	1 cut(s)	249
MhlI	GDGCHC	1 cut(s)	596
MluCI	AATT	6 cut(s)	35, 378, 386, 472, 586, 784
MnlI	CCTC	7 cut(s)	281, 410, 453, 474, 633, 667, 794
MseI	TTAA	3 cut(s)	73, 231, 414
MslI	CAYNNNNRTG	1 cut(s)	246
MspA1I	CMGCKG	1 cut(s)	558
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	2 cut(s)	552, 638
MvaI	CCWGG	2 cut(s)	552, 638
MwoI	GCNNNNNNNGC	3 cut(s)	315, 345, 474
NdeII	GATC	1 cut(s)	506
NlaIII	CATG	2 cut(s)	48, 120
NlaIV	GGNNCC	1 cut(s)	178
OliI	CACNNNNGTG	1 cut(s)	246
PceI	AGGCCT	1 cut(s)	746
PfeI	GAWTC	2 cut(s)	147, 216
PflMI	CCANNNNNTGG	1 cut(s)	326
PkrI	GCNGC	5 cut(s)	295, 308, 557, 560, 704
PpuMI	RGGWCCY	1 cut(s)	483
PshBI	ATTAAT	2 cut(s)	73, 414
Psp5II	RGGWCCY	1 cut(s)	483
Psp6I	CCWGG	2 cut(s)	550, 636
PspGI	CCWGG	2 cut(s)	550, 636
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	5 cut(s)	176, 317, 397, 440, 483
PspPPI	RGGWCCY	1 cut(s)	483
PsrI	GAACNNNNNNTAC	1 cut(s)	840
PstI	CTGCAG	1 cut(s)	707
PvuII	CAGCTG	1 cut(s)	558
RsaI	GTAC	3 cut(s)	106, 497, 649
RsaNI	GTAC	3 cut(s)	105, 496, 648
RseI	CAYNNNNRTG	1 cut(s)	246
SaqAI	TTAA	3 cut(s)	73, 231, 414
SatI	GCNGC	5 cut(s)	294, 307, 556, 559, 703
Sau3AI	GATC	1 cut(s)	506
Sau96I	GGNCC	5 cut(s)	176, 317, 397, 440, 483
ScrFI	CCNGG	2 cut(s)	552, 638
SduI	GDGCHC	1 cut(s)	596
SfaNI	GCATC	1 cut(s)	624
SfcI	CTRYAG	3 cut(s)	487, 667, 703
SinI	GGWCC	2 cut(s)	176, 483
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	207
SmoI	CTYRAG	1 cut(s)	207
Sse9I	AATT	6 cut(s)	35, 378, 386, 472, 586, 784
SseBI	AGGCCT	1 cut(s)	746
SspI	AATATT	1 cut(s)	545
SspMI	CTAG	2 cut(s)	349, 357
StuI	AGGCCT	1 cut(s)	746
StyD4I	CCNGG	2 cut(s)	550, 636
TaaI	ACNGT	1 cut(s)	537
TaqI	TCGA	1 cut(s)	782
TaqII	GACCGA	1 cut(s)	164
TasI	AATT	6 cut(s)	35, 378, 386, 472, 586, 784
TatI	WGTACW	2 cut(s)	104, 647
TfiI	GAWTC	2 cut(s)	147, 216
Tru1I	TTAA	3 cut(s)	73, 231, 414
Tru9I	TTAA	3 cut(s)	73, 231, 414
TscAI	CASTG	3 cut(s)	104, 274, 442
TseI	GCWGC	5 cut(s)	293, 306, 555, 558, 702
TspDTI	ATGAA	4 cut(s)	160, 177, 632, 848
TspGWI	ACGGA	1 cut(s)	621
TspRI	CASTG	3 cut(s)	104, 274, 442
Van91I	CCANNNNNTGG	1 cut(s)	326
VpaK11BI	GGWCC	2 cut(s)	176, 483
VspI	ATTAAT	2 cut(s)	73, 414
XapI	RAATTY	2 cut(s)	35, 386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	51
XspI	CTAG	2 cut(s)	349, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.