Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016647.1

Orthogroup ID

OG0011217

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2331

Gene Structure 2331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016647.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 704 bp

gacctcttcttgataccaacaatatagtgggtaaaggtttcgaagctattaaacttggatggaaggaatacttacagcagccagttcttcctgcaagcctagcctatgtcctgctttattttaatgttgtactaactccaggcagtttgatgacagcctatctaacacagagtggtctaaatccatctatcattggcggtttcagtggactatgtgcctttatgggtgtcgcagcaacatttgtctcggctagcctggtcaggcgacttggcatcttaaaggctggagcagctgggttgataattcaggcttcacttctcaccgtagctgttgctgtttattgtagtagatctccttcccagcaaagcccccttcttttcttcttgtgcttgattgtattatcaaggttaggacacatgtcatatgatgttgtggcagcccagattcttcaaactgggataccgccatccaaagtaaatatcatcgggacaacagaagttgctgttgctagtctggcagagtctgcaatgttgggagtagcgattattgccaacgatatgaacaaagaagtcttttctcatttgatgcccgctgttaatattgagttatctgtggtggaaagagagtttggggttgatcagaaacaggatatagtaatacttcatatggtgccggtaagacgccttcgtattgtttggatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006873 GO:0006875 GO:0006879 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0019725 GO:0030003 GO:0031967 GO:0031975 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046916 GO:0048878 GO:0050801 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04216 ko04978 map04216 map04978

Pfam Domains

Protein Families

FPN1

Protein Analysis

233

Amino Acids

24.97

Weight (kDa)

8.61

Isoelectric Point (pI)

54.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26820
fragaria_vesca	FvH4_6g07510 FvH4_6g07510
malus_domestica	MD04G1193000.v1.1 MD12G1205200.v1.1
prunus_persica	Prupe.6G312300_v2.0.a1
pyrus_communis	pycom04g17030 pycom12g19300
rosa_chinensis	RchiOBHm_Chr3g0457221
rosa_laevigata	RLG00000025242
rosa_multiflora	Rmu_co8479255.1_g000001 Rmu_sc0000488.1_g000027 Rmu_sc0016647.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422100
rosa_rugosa	Rorug03G0019400
rosa_samantha	Rh3AG079300 Rh3BG081000 Rh3CG081300 Rh3DG083000
rosa_wichuraiana	Rw3G006830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	669
AciI	CCGC	3 cut(s)	197, 463, 590
AcyI	GRCGYC	1 cut(s)	681
AdeI	CACNNNGTG	1 cut(s)	172
AfaI	GTAC	1 cut(s)	131
AflIII	ACRYGT	1 cut(s)	416
AgsI	TTSAA	1 cut(s)	451
AjnI	CCWGG	2 cut(s)	138, 254
AjuI	GAANNNNNNNTTGG	2 cut(s)	611, 643
AluBI	AGCT	3 cut(s)	46, 292, 328
AluI	AGCT	3 cut(s)	46, 292, 328
Alw26I	GTCTC	1 cut(s)	249
AlwNI	CAGNNNCTG	1 cut(s)	523
ApeKI	GCWGC	4 cut(s)	78, 232, 289, 436
AsuHPI	GGTGA	1 cut(s)	312
AsuII	TTCGAA	1 cut(s)	41
AsuNHI	GCTAGC	1 cut(s)	250
BanI	GGYRCC	1 cut(s)	669
BarI	GAAGNNNNNNTAC	4 cut(s)	339, 371, 668, 700
BbvI	GCAGC	4 cut(s)	90, 244, 301, 448
BccI	CCATC	3 cut(s)	53, 192, 474
BciT130I	CCWGG	2 cut(s)	140, 256
BciVI	GTATCC	1 cut(s)	452
BclI	TGATCA	1 cut(s)	636
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	3 cut(s)	100, 251, 509
BfuI	GTATCC	1 cut(s)	452
BglII	AGATCT	1 cut(s)	349
BisI	GCNGC	4 cut(s)	79, 233, 290, 437
BlsI	GCNGC	4 cut(s)	80, 234, 291, 438
Bme1390I	CCNGG	2 cut(s)	140, 256
BmiI	GGNNCC	1 cut(s)	671
BmrFI	CCNGG	2 cut(s)	140, 256
BmrI	ACTGGG	1 cut(s)	464
BmsI	GCATC	2 cut(s)	281, 575
BmtI	GCTAGC	1 cut(s)	254
BmuI	ACTGGG	1 cut(s)	464
BoxI	GACNNNNGTC	1 cut(s)	417
BpmI	CTGGAG	2 cut(s)	122, 305
Bpu14I	TTCGAA	1 cut(s)	41
BsaHI	GRCGYC	1 cut(s)	681
Bse118I	RCCGGY	1 cut(s)	672
Bse1I	ACTGG	2 cut(s)	82, 459
Bse3DI	GCAATG	1 cut(s)	533
BseBI	CCWGG	2 cut(s)	140, 256
BseGI	GGATG	2 cut(s)	64, 466
BseMI	GCAATG	1 cut(s)	533
BseNI	ACTGG	2 cut(s)	82, 459
BseXI	GCAGC	4 cut(s)	90, 244, 301, 448
BseYI	CCCAGC	2 cut(s)	292, 359
BshNI	GGYRCC	1 cut(s)	669
BsiSI	CCGG	1 cut(s)	673
BslFI	GGGAC	1 cut(s)	501
BsmAI	GTCTC	1 cut(s)	249
BsmFI	GGGAC	1 cut(s)	501
Bsp119I	TTCGAA	1 cut(s)	41
Bsp143I	GATC	2 cut(s)	349, 636
BspACI	CCGC	3 cut(s)	197, 463, 590
BspLI	GGNNCC	1 cut(s)	671
BspOI	GCTAGC	1 cut(s)	254
BspT104I	TTCGAA	1 cut(s)	41
BspT107I	GGYRCC	1 cut(s)	669
BsrDI	GCAATG	1 cut(s)	533
BsrFI	RCCGGY	1 cut(s)	672
BsrI	ACTGG	2 cut(s)	82, 459
BssAI	RCCGGY	1 cut(s)	672
BssMI	GATC	2 cut(s)	349, 636
BssNI	GRCGYC	1 cut(s)	681
Bst2UI	CCWGG	2 cut(s)	140, 256
Bst4CI	ACNGT	1 cut(s)	324
Bst6I	CTCTTC	1 cut(s)	11
BstACI	GRCGYC	1 cut(s)	681
BstAPI	GCANNNNNTGC	1 cut(s)	523
BstBI	TTCGAA	1 cut(s)	41
BstC8I	GCNNGC	3 cut(s)	96, 252, 590
BstF5I	GGATG	2 cut(s)	64, 466
BstKTI	GATC	2 cut(s)	352, 639
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	2 cut(s)	349, 636
BstMWI	GCNNNNNNNGC	5 cut(s)	100, 289, 514, 523, 547
BstNI	CCWGG	2 cut(s)	140, 256
BstNSI	RCATGY	1 cut(s)	420
BstPAI	GACNNNNGTC	1 cut(s)	417
BstSCI	CCNGG	2 cut(s)	138, 254
BstV1I	GCAGC	4 cut(s)	90, 244, 301, 448
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BsuI	GTATCC	1 cut(s)	452
BtsCI	GGATG	2 cut(s)	64, 466
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	3 cut(s)	96, 252, 590
CaiI	CAGNNNCTG	1 cut(s)	523
Cfr10I	RCCGGY	1 cut(s)	672
CseI	GACGC	1 cut(s)	689
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	1 cut(s)	417
CviQI	GTAC	1 cut(s)	130
DpnI	GATC	2 cut(s)	351, 638
DpnII	GATC	2 cut(s)	349, 636
DraIII	CACNNNGTG	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
EcoRII	CCWGG	2 cut(s)	138, 254
FaeI	CATG	1 cut(s)	420
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FaqI	GGGAC	1 cut(s)	501
FatI	CATG	1 cut(s)	416
FauI	CCCGC	1 cut(s)	597
FauNDI	CATATG	2 cut(s)	423, 665
FbaI	TGATCA	1 cut(s)	636
Fnu4HI	GCNGC	4 cut(s)	79, 233, 290, 437
FokI	GGATG	2 cut(s)	71, 453
Fsp4HI	GCNGC	4 cut(s)	79, 233, 290, 437
FspBI	CTAG	3 cut(s)	100, 251, 509
GluI	GCNGC	4 cut(s)	79, 233, 290, 437
GsaI	CCCAGC	2 cut(s)	296, 363
GsuI	CTGGAG	2 cut(s)	122, 305
HapII	CCGG	1 cut(s)	673
HgaI	GACGC	1 cut(s)	689
Hin1I	GRCGYC	1 cut(s)	681
Hin1II	CATG	1 cut(s)	420
HinfI	GANTC	2 cut(s)	444, 520
HpaII	CCGG	1 cut(s)	673
HphI	GGTGA	1 cut(s)	312
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	1 cut(s)	641
Hpy188III	TCNNGA	2 cut(s)	10, 486
Hpy8I	GTNNAC	1 cut(s)	208
HpyAV	CCTTC	4 cut(s)	57, 365, 382, 694
HpyCH4III	ACNGT	1 cut(s)	324
HpyCH4V	TGCA	2 cut(s)	94, 526
HpyF10VI	GCNNNNNNNGC	5 cut(s)	100, 289, 514, 523, 547
Hsp92I	GRCGYC	1 cut(s)	681
Hsp92II	CATG	1 cut(s)	420
Ksp22I	TGATCA	1 cut(s)	636
Kzo9I	GATC	2 cut(s)	349, 636
LmnI	GCTCC	1 cut(s)	286
Lsp1109I	GCAGC	4 cut(s)	90, 244, 301, 448
LweI	GCATC	2 cut(s)	281, 575
MaeI	CTAG	3 cut(s)	100, 251, 509
MalI	GATC	2 cut(s)	351, 638
MboI	GATC	2 cut(s)	349, 636
MboII	GAAGA	3 cut(s)	79, 372, 439
MflI	RGATCY	1 cut(s)	349
MluCI	AATT	1 cut(s)	302
MlyI	GAGTC	1 cut(s)	529
MnlI	CCTC	1 cut(s)	14
MseI	TTAA	4 cut(s)	50, 122, 277, 596
MspA1I	CMGCKG	2 cut(s)	292, 592
MspI	CCGG	1 cut(s)	673
MspR9I	CCNGG	2 cut(s)	140, 256
MvaI	CCWGG	2 cut(s)	140, 256
MwoI	GCNNNNNNNGC	5 cut(s)	100, 289, 514, 523, 547
NdeI	CATATG	2 cut(s)	423, 665
NdeII	GATC	2 cut(s)	349, 636
NheI	GCTAGC	1 cut(s)	250
NlaIII	CATG	1 cut(s)	420
NlaIV	GGNNCC	1 cut(s)	671
NmeAIII	GCCGAG	1 cut(s)	226
NspI	RCATGY	1 cut(s)	420
NspV	TTCGAA	1 cut(s)	41
PciI	ACATGT	1 cut(s)	416
PfeI	GAWTC	1 cut(s)	444
PkrI	GCNGC	4 cut(s)	80, 234, 291, 438
PleI	GAGTC	1 cut(s)	528
PpsI	GAGTC	1 cut(s)	528
PscI	ACATGT	1 cut(s)	416
PshAI	GACNNNNGTC	1 cut(s)	417
Psp6I	CCWGG	2 cut(s)	138, 254
PspFI	CCCAGC	2 cut(s)	292, 359
PspGI	CCWGG	2 cut(s)	138, 254
PspN4I	GGNNCC	1 cut(s)	671
PstNI	CAGNNNCTG	1 cut(s)	523
PsuI	RGATCY	1 cut(s)	349
PvuII	CAGCTG	1 cut(s)	292
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SaqAI	TTAA	4 cut(s)	50, 122, 277, 596
SatI	GCNGC	4 cut(s)	79, 233, 290, 437
Sau3AI	GATC	2 cut(s)	349, 636
SchI	GAGTC	1 cut(s)	529
ScrFI	CCNGG	2 cut(s)	140, 256
SetI	ASST	6 cut(s)	6, 39, 48, 294, 330, 409
SfaNI	GCATC	2 cut(s)	281, 575
SfuI	TTCGAA	1 cut(s)	41
Sse9I	AATT	1 cut(s)	302
SsiI	CCGC	3 cut(s)	197, 463, 590
SspI	AATATT	1 cut(s)	600
SspMI	CTAG	3 cut(s)	100, 251, 509
StyD4I	CCNGG	2 cut(s)	138, 254
TaaI	ACNGT	1 cut(s)	324
TaqI	TCGA	1 cut(s)	41
TasI	AATT	1 cut(s)	302
TatI	WGTACW	1 cut(s)	129
TfiI	GAWTC	1 cut(s)	444
Tru1I	TTAA	4 cut(s)	50, 122, 277, 596
Tru9I	TTAA	4 cut(s)	50, 122, 277, 596
TscAI	CASTG	1 cut(s)	210
TseI	GCWGC	4 cut(s)	78, 232, 289, 436
TspDTI	ATGAA	2 cut(s)	574, 652
TspRI	CASTG	1 cut(s)	210
XceI	RCATGY	1 cut(s)	420
XcmI	CCANNNNNNNNNTGG	1 cut(s)	24
XspI	CTAG	3 cut(s)	100, 251, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.