Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0007926

Physical Location & Seq

Genomic Coordinates Reverse (-)

21669249 .. 21672385

Gene Structure 3137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCAGCAGCACCTGATGCAGATGCAGCCCATGATGGCAGCCTATTATCCTAACAACGTCACTATCGATCACATTCAGCAGTACTTGGACGAGAACAAGTCGTTGATCTTGAAGATTGTTGAGAGCCAAAATTCTGGGAAACTGAATGAATGTGCAGAGAACCAAGCAAAGCTACAGAGGAATCTGATGTACCTGGCTGCCATTGCTGATTCTCAACCCCAGCCTCCTACCATGCATCCTCAGTACTCTTCCACCGGTATGATGCAACCAGGAGCGCATTACATGCAGCAACAAGCGGCTCAACAGATGACACAACAATCGCTCATGGCTGCGCGCTCTTCCATGATGTACTCCCAGCAGCCGTTTTCAGCTCTACAGCAACAAGCCCTGCACAGCCAATTTGCCATGAGTGCTGGAGGAAGCGCGGGACTTCACATGCTCGGGAATGAGGGAAATAATGCTGGAGGCAGCGGGCAACTTGGGGCTGGAGGGTTTGGTGATTACGGACGCAGCTCTCCTGGAGAAGACATGCATAGGAGGATGGCTGGCGGGAGTAAGCAAGATATGGATGGGAGAGGCGGGAGCTCCGGAAGCCACCCCGGAGATGGGGGTGAGACTCTTTACCTGAAATCGACCGATGATGGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003712 GO:0003713 GO:0007275 GO:0007389 GO:0008150 GO:0008283 GO:0009889 GO:0009891 GO:0009893 GO:0009955 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSXT

Protein Analysis

217

Amino Acids

23.25

Weight (kDa)

5.84

Isoelectric Point (pI)

65.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSXT	PF05030	19 - 74	2.2e-20	SSXT protein (N-terminal region)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28640 AT5G28640 AT5G28640
fragaria_vesca	FvH4_6g02460 FvH4_6g02460 FvH4_6g02460 FvH4_6g02460
malus_domestica	MD04G1227900.v1.1 MD12G1244500.v1.1
prunus_persica	Prupe.6G346900_v2.0.a1 Prupe.6G346900_v2.0.a1
pyrus_communis	pycom04g20170 pycom12g22420
rosa_chinensis	RchiOBHm_Chr3g0450341
rosa_laevigata	RLG00000025739
rosa_multiflora	Rmu_sc0000330.1_g000001 Rmu_sc0005298.1_g000002 Rmu_sc0006063.1_g000002
rosa_roxburghii	Rroxscaffold_6G00428060
rosa_rugosa	Rorug02G0626800
rosa_samantha	Rh3AG027300 Rh3BG027900 Rh3DG027700
rosa_wichuraiana	Rw3G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	334, 425
AccIII	TCCGGA	1 cut(s)	587
AciI	CCGC	5 cut(s)	296, 425, 471, 549, 579
AcsI	RAATTY	1 cut(s)	130
AfaI	GTAC	4 cut(s)	83, 191, 245, 350
AfiI	CCNNNNNNNGG	3 cut(s)	605, 606, 642
AgeI	ACCGGT	1 cut(s)	254
AgsI	TTSAA	1 cut(s)	112
AjnI	CCWGG	3 cut(s)	192, 268, 517
AluBI	AGCT	4 cut(s)	172, 371, 513, 585
AluI	AGCT	4 cut(s)	172, 371, 513, 585
Alw21I	GWGCWC	1 cut(s)	587
Alw26I	GTCTC	1 cut(s)	608
AlwNI	CAGNNNCTG	1 cut(s)	13
Ama87I	CYCGRG	1 cut(s)	440
Aor13HI	TCCGGA	1 cut(s)	587
ApoI	RAATTY	1 cut(s)	130
AsiGI	ACCGGT	1 cut(s)	254
AspLEI	GCGC	4 cut(s)	277, 334, 336, 425
AsuC2I	CCSGG	1 cut(s)	600
AsuHPI	GGTGA	2 cut(s)	509, 623
AvaI	CYCGRG	1 cut(s)	440
BanII	GRGCYC	1 cut(s)	587
BbsI	GAAGAC	1 cut(s)	531
Bbv12I	GWGCWC	1 cut(s)	587
BccI	CCATC	5 cut(s)	28, 535, 563, 599, 635
BceAI	ACGGC	1 cut(s)	346
BciT130I	CCWGG	3 cut(s)	194, 270, 519
BcnI	CCSGG	1 cut(s)	600
BcoDI	GTCTC	1 cut(s)	608
BfmI	CTRYAG	2 cut(s)	173, 374
BmcAI	AGTACT	2 cut(s)	83, 245
Bme1390I	CCNGG	4 cut(s)	194, 270, 519, 600
BmeT110I	CYCGRG	1 cut(s)	440
BmrFI	CCNGG	4 cut(s)	194, 270, 519, 600
BmsI	GCATC	4 cut(s)	6, 12, 244, 252
BpiI	GAAGAC	1 cut(s)	531
BpmI	CTGGAG	4 cut(s)	435, 483, 507, 540
BpuMI	CCSGG	1 cut(s)	600
Bsa29I	ATCGAT	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	598
BsaWI	WCCGGW	2 cut(s)	254, 587
Bsc4I	CCNNNNNNNGG	3 cut(s)	605, 606, 642
Bse118I	RCCGGY	1 cut(s)	254
Bse3DI	GCAATG	1 cut(s)	201
BseAI	TCCGGA	1 cut(s)	587
BseBI	CCWGG	3 cut(s)	194, 270, 519
BseCI	ATCGAT	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	598
BseGI	GGATG	3 cut(s)	235, 546, 574
BseLI	CCNNNNNNNGG	3 cut(s)	605, 606, 642
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	254
BsePI	GCGCGC	1 cut(s)	332
BseYI	CCCAGC	2 cut(s)	219, 354
BsgI	GTGCAG	2 cut(s)	174, 374
Bsh1236I	CGCG	2 cut(s)	334, 425
Bsh1285I	CGRYCG	1 cut(s)	636
BshTI	ACCGGT	1 cut(s)	254
BshVI	ATCGAT	1 cut(s)	66
BsiEI	CGRYCG	1 cut(s)	636
BsiHKAI	GWGCWC	1 cut(s)	587
BsiHKCI	CYCGRG	1 cut(s)	440
BsiSI	CCGG	3 cut(s)	255, 588, 600
BslFI	GGGAC	1 cut(s)	441
BslI	CCNNNNNNNGG	3 cut(s)	605, 606, 642
BsmAI	GTCTC	1 cut(s)	608
BsmFI	GGGAC	1 cut(s)	441
BsoBI	CYCGRG	1 cut(s)	440
Bsp1286I	GDGCHC	1 cut(s)	587
Bsp13I	TCCGGA	1 cut(s)	587
Bsp143I	GATC	2 cut(s)	67, 105
BspACI	CCGC	5 cut(s)	296, 425, 471, 549, 579
BspCNI	CTCAG	1 cut(s)	253
BspDI	ATCGAT	1 cut(s)	66
BspEI	TCCGGA	1 cut(s)	587
BspFNI	CGCG	2 cut(s)	334, 425
BspQI	GCTCTTC	1 cut(s)	343
BsrDI	GCAATG	1 cut(s)	201
BsrFI	RCCGGY	1 cut(s)	254
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	1 cut(s)	598
BssHII	GCGCGC	1 cut(s)	332
BssMI	GATC	2 cut(s)	67, 105
Bst2UI	CCWGG	3 cut(s)	194, 270, 519
Bst6I	CTCTTC	2 cut(s)	253, 343
BstAPI	GCANNNNNTGC	2 cut(s)	16, 283
BstC8I	GCNNGC	3 cut(s)	334, 473, 547
BstDEI	CTNAG	1 cut(s)	240
BstF5I	GGATG	3 cut(s)	235, 546, 574
BstFNI	CGCG	2 cut(s)	334, 425
BstHHI	GCGC	4 cut(s)	277, 334, 336, 425
BstKTI	GATC	2 cut(s)	70, 108
BstMAI	GTCTC	1 cut(s)	608
BstMBI	GATC	2 cut(s)	67, 105
BstMCI	CGRYCG	1 cut(s)	636
BstMWI	GCNNNNNNNGC	6 cut(s)	16, 25, 203, 283, 410, 591
BstNI	CCWGG	3 cut(s)	194, 270, 519
BstNSI	RCATGY	3 cut(s)	286, 439, 532
BstSCI	CCNGG	4 cut(s)	192, 268, 517, 598
BstSFI	CTRYAG	2 cut(s)	173, 374
BstUI	CGCG	2 cut(s)	334, 425
BstV2I	GAAGAC	1 cut(s)	531
BstXI	CCANNNNNNTGG	1 cut(s)	134
Bsu15I	ATCGAT	1 cut(s)	66
BsuTUI	ATCGAT	1 cut(s)	66
BtsCI	GGATG	3 cut(s)	235, 546, 574
Cac8I	GCNNGC	3 cut(s)	334, 473, 547
CaiI	CAGNNNCTG	1 cut(s)	13
CfoI	GCGC	4 cut(s)	277, 334, 336, 425
Cfr10I	RCCGGY	1 cut(s)	254
ClaI	ATCGAT	1 cut(s)	66
CseI	GACGC	1 cut(s)	516
Csp6I	GTAC	4 cut(s)	82, 190, 244, 349
CspAI	ACCGGT	1 cut(s)	254
CviAII	CATG	8 cut(s)	31, 232, 283, 325, 343, 406, 436, 529
CviQI	GTAC	4 cut(s)	82, 190, 244, 349
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	2 cut(s)	69, 107
DpnII	GATC	2 cut(s)	67, 105
Eam1104I	CTCTTC	2 cut(s)	253, 343
EarI	CTCTTC	2 cut(s)	253, 343
Ecl136II	GAGCTC	1 cut(s)	585
Eco24I	GRGCYC	1 cut(s)	587
Eco53kI	GAGCTC	1 cut(s)	585
Eco88I	CYCGRG	1 cut(s)	440
EcoICRI	GAGCTC	1 cut(s)	585
EcoRII	CCWGG	3 cut(s)	192, 268, 517
EcoT22I	ATGCAT	2 cut(s)	237, 534
EcoT38I	GRGCYC	1 cut(s)	587
FaeI	CATG	8 cut(s)	34, 235, 286, 328, 346, 409, 439, 532
FaqI	GGGAC	1 cut(s)	441
FatI	CATG	8 cut(s)	30, 231, 282, 324, 342, 405, 435, 528
FauI	CCCGC	4 cut(s)	418, 464, 542, 572
FokI	GGATG	3 cut(s)	222, 553, 581
FriOI	GRGCYC	1 cut(s)	587
GlaI	GCGC	4 cut(s)	276, 333, 335, 424
GsaI	CCCAGC	2 cut(s)	223, 358
GsuI	CTGGAG	4 cut(s)	435, 483, 507, 540
HapII	CCGG	3 cut(s)	255, 588, 600
HgaI	GACGC	1 cut(s)	516
HhaI	GCGC	4 cut(s)	277, 334, 336, 425
Hin1II	CATG	8 cut(s)	34, 235, 286, 328, 346, 409, 439, 532
Hin6I	GCGC	4 cut(s)	275, 332, 334, 423
HinP1I	GCGC	4 cut(s)	275, 332, 334, 423
HinfI	GANTC	3 cut(s)	181, 209, 616
HpaII	CCGG	3 cut(s)	255, 588, 600
HphI	GGTGA	2 cut(s)	509, 623
Hpy188I	TCNGA	1 cut(s)	186
Hpy188III	TCNNGA	3 cut(s)	109, 442, 588
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	9 cut(s)	4, 19, 25, 155, 235, 265, 286, 391, 532
HpyF10VI	GCNNNNNNNGC	6 cut(s)	16, 25, 203, 283, 410, 591
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	8 cut(s)	34, 235, 286, 328, 346, 409, 439, 532
HspAI	GCGC	4 cut(s)	275, 332, 334, 423
Kpn2I	TCCGGA	1 cut(s)	587
Kzo9I	GATC	2 cut(s)	67, 105
LguI	GCTCTTC	1 cut(s)	343
LmnI	GCTCC	3 cut(s)	272, 582, 590
LweI	GCATC	4 cut(s)	6, 12, 244, 252
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	2 cut(s)	69, 107
MboI	GATC	2 cut(s)	67, 105
MboII	GAAGA	4 cut(s)	124, 240, 330, 536
MhlI	GDGCHC	1 cut(s)	587
MluCI	AATT	3 cut(s)	130, 398, 646
MlyI	GAGTC	1 cut(s)	610
MnlI	CCTC	9 cut(s)	171, 234, 249, 410, 442, 458, 482, 531, 569
Mph1103I	ATGCAT	2 cut(s)	237, 534
MroI	TCCGGA	1 cut(s)	587
MseI	TTAA	1 cut(s)	649
MslI	CAYNNNNRTG	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	471
MspI	CCGG	3 cut(s)	255, 588, 600
MspR9I	CCNGG	4 cut(s)	194, 270, 519, 600
MvaI	CCWGG	3 cut(s)	194, 270, 519
MvnI	CGCG	2 cut(s)	334, 425
MwoI	GCNNNNNNNGC	6 cut(s)	16, 25, 203, 283, 410, 591
NciI	CCSGG	1 cut(s)	600
NdeII	GATC	2 cut(s)	67, 105
NlaIII	CATG	8 cut(s)	34, 235, 286, 328, 346, 409, 439, 532
NmuCI	GTSAC	1 cut(s)	58
NsiI	ATGCAT	2 cut(s)	237, 534
NspI	RCATGY	3 cut(s)	286, 439, 532
PauI	GCGCGC	1 cut(s)	332
PciSI	GCTCTTC	1 cut(s)	343
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	181, 209
PfoI	TCCNGGA	1 cut(s)	517
PinAI	ACCGGT	1 cut(s)	254
PleI	GAGTC	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	610
Psp124BI	GAGCTC	1 cut(s)	587
Psp6I	CCWGG	3 cut(s)	192, 268, 517
PspFI	CCCAGC	2 cut(s)	219, 354
PspGI	CCWGG	3 cut(s)	192, 268, 517
PstNI	CAGNNNCTG	1 cut(s)	13
PteI	GCGCGC	1 cut(s)	332
RsaI	GTAC	4 cut(s)	83, 191, 245, 350
RsaNI	GTAC	4 cut(s)	82, 190, 244, 349
RseI	CAYNNNNRTG	1 cut(s)	257
SacI	GAGCTC	1 cut(s)	587
SapI	GCTCTTC	1 cut(s)	343
SaqAI	TTAA	1 cut(s)	649
Sau3AI	GATC	2 cut(s)	67, 105
ScaI	AGTACT	2 cut(s)	83, 245
SchI	GAGTC	1 cut(s)	610
ScrFI	CCNGG	4 cut(s)	194, 270, 519, 600
SduI	GDGCHC	1 cut(s)	587
SetI	ASST	8 cut(s)	15, 60, 174, 195, 373, 515, 587, 627
SfaNI	GCATC	4 cut(s)	6, 12, 244, 252
SfcI	CTRYAG	2 cut(s)	173, 374
SmiMI	CAYNNNNRTG	1 cut(s)	257
Sse9I	AATT	3 cut(s)	130, 398, 646
SsiI	CCGC	5 cut(s)	296, 425, 471, 549, 579
SstI	GAGCTC	1 cut(s)	587
StyD4I	CCNGG	4 cut(s)	192, 268, 517, 598
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	2 cut(s)	66, 632
TaqII	GACCGA	1 cut(s)	650
TasI	AATT	3 cut(s)	130, 398, 646
TatI	WGTACW	3 cut(s)	81, 243, 348
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	2 cut(s)	181, 209
Tru1I	TTAA	1 cut(s)	649
Tru9I	TTAA	1 cut(s)	649
TseFI	GTSAC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	162
TspGWI	ACGGA	1 cut(s)	519
XapI	RAATTY	1 cut(s)	130
XceI	RCATGY	3 cut(s)	286, 439, 532
XcmI	CCANNNNNNNNNTGG	1 cut(s)	602
ZrmI	AGTACT	2 cut(s)	83, 245
Zsp2I	ATGCAT	2 cut(s)	237, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.