pycom05g00280

Protein of unknown function (DUF1336)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0007793
Physical Location & Seq
Forward (+)
343993 .. 345880
1888 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 963 bp
ATGGACAGCAGTGGTGAAAAGAAGGAGCTTGAATGGATAGAGAGAGTGAGATCAGAAGGAGCTGTTCCACTTCTTGATCCGGACAATTGCCGAAATGGTTGGGCTTCTCCACCTGGATACAAGTTCTTGGTTAGAGGTCCAGACTACTTGTCAACCAGGGTTAAAGTTCCTGCTGGTGAATATCTTCTAAAGTCTCTTGGTTTCGATTGGATTAGAAGTTCGACAAAGATTGGGGAGGTCTTAAAACATCCAAGTGGTCGTGTTAAGAAGGCTATTGAGGAAGAGTTTCCGACAGGTGATAAGCCTTTCGTTTGGGCTTTCAATCTTCAAGTTCCGAGTAAGGATAATTATAGTGCTGTGGCGTATTTTACTACCAGAGAGCCTATTCTGGAGGGGTCTTTGATGGACCAGTTCTTGAAAGGTGATGATGGGTTTAGGAATTCAAGGCTTAAATTGATTGCCAACATTGTCAAGGGCCCTTGGATTGTGAGGAAAGCAGTTGGGGAGCAGGCCATATGCATAATTGGGCGTGCCCTTTCTTGTAATTATTGTGCATCAGATAGTTTCTTAGAAGTAGACGTGGATATTGGGTCTTCCATGGTTGCAAGTGCAATAGTTCATCTTGCATTTGGTTATATCACAACTCTGACCGTTGACCTTGCATTTCTCATCGAGAGCCAAACTGAATCAGAGCTTCCAGAACAACTTTTAGGTGCTGTAAGATTCTCTGAACTAGACCCTGCGGTGGCAAGGCCAACTGAACCATATCTTGGTAGGAGTACTGGCAGTTTGCAGTCTAATCTGCCTACACGATTATGGAAGTCAATTGGGCAGGGATTTTCCCACATGCTTCATCCAGGTGACCATGAAAATGGCTCTAGCTTGGGCTCACCATGTGTTAATGGGATTGGAGACAATGAAAGCAGTTCCATAGAGATTAAGAAATGCAATATAGTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1336

Protein Analysis

321

Amino Acids

35.14

Weight (kDa)

5.67

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR2_C PF07059 34 - 246 1.9e-76 Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 770
AccI GTMKAC 1 cut(s) 576
AccIII TCCGGA 1 cut(s) 79
AciI CCGC 1 cut(s) 743
AclWI GGATC 1 cut(s) 71
AcsI RAATTY 1 cut(s) 439
AdeI CACNNNGTG 1 cut(s) 896
AfaI GTAC 1 cut(s) 781
AfiI CCNNNNNNNGG 2 cut(s) 745, 770
AgsI TTSAA 5 cut(s) 32, 322, 329, 418, 444
AhdI GACNNNNNGTC 1 cut(s) 148
AjiI CACGTC 1 cut(s) 580
AjnI CCWGG 3 cut(s) 112, 155, 856
AjuI GAANNNNNNNTTGG 2 cut(s) 753, 785
AloI GAACNNNNNNTCC 2 cut(s) 202, 234
AluBI AGCT 4 cut(s) 28, 62, 694, 882
AluI AGCT 4 cut(s) 28, 62, 694, 882
Alw26I GTCTC 2 cut(s) 198, 906
AlwI GGATC 1 cut(s) 71
Aor13HI TCCGGA 1 cut(s) 79
AoxI GGCC 3 cut(s) 475, 510, 752
ApaI GGGCCC 1 cut(s) 479
ApoI RAATTY 1 cut(s) 439
Asp700I GAANNNNTTC 2 cut(s) 183, 285
AspS9I GGNCC 4 cut(s) 137, 406, 475, 476
AsuHPI GGTGA 6 cut(s) 26, 188, 308, 434, 872, 882
AvaII GGWCC 2 cut(s) 137, 406
BaeGI GKGCMC 2 cut(s) 479, 535
BanII GRGCYC 2 cut(s) 479, 890
BbsI GAAGAC 1 cut(s) 585
BccI CCATC 2 cut(s) 397, 422
BciT130I CCWGG 3 cut(s) 114, 157, 858
BciVI GTATCC 1 cut(s) 110
BcoDI GTCTC 2 cut(s) 198, 906
BfaI CTAG 2 cut(s) 734, 879
BfuI GTATCC 1 cut(s) 110
BmcAI AGTACT 1 cut(s) 781
Bme1390I CCNGG 3 cut(s) 114, 157, 858
Bme18I GGWCC 2 cut(s) 137, 406
BmeRI GACNNNNNGTC 1 cut(s) 148
BmgBI CACGTC 1 cut(s) 580
BmgT120I GGNCC 4 cut(s) 137, 406, 475, 476
BmiI GGNNCC 1 cut(s) 477
BmrFI CCNGG 3 cut(s) 114, 157, 858
BmsI GCATC 1 cut(s) 563
BpiI GAAGAC 1 cut(s) 585
BpmI CTGGAG 1 cut(s) 410
BsaJI CCNNGG 3 cut(s) 156, 479, 597
BsaWI WCCGGW 1 cut(s) 79
Bsc4I CCNNNNNNNGG 2 cut(s) 745, 770
Bse1I ACTGG 2 cut(s) 409, 787
BseAI TCCGGA 1 cut(s) 79
BseBI CCWGG 3 cut(s) 114, 157, 858
BseDI CCNNGG 3 cut(s) 156, 479, 597
BseGI GGATG 2 cut(s) 247, 853
BseLI CCNNNNNNNGG 2 cut(s) 745, 770
BseNI ACTGG 2 cut(s) 409, 787
BseSI GKGCMC 2 cut(s) 479, 535
BshFI GGCC 3 cut(s) 477, 512, 754
BsiSI CCGG 1 cut(s) 80
BslI CCNNNNNNNGG 2 cut(s) 745, 770
BsmAI GTCTC 2 cut(s) 198, 906
BsnI GGCC 3 cut(s) 477, 512, 754
Bsp120I GGGCCC 1 cut(s) 475
Bsp1286I GDGCHC 3 cut(s) 479, 535, 890
Bsp13I TCCGGA 1 cut(s) 79
Bsp143I GATC 2 cut(s) 50, 76
Bsp19I CCATGG 1 cut(s) 597
BspACI CCGC 1 cut(s) 743
BspANI GGCC 3 cut(s) 477, 512, 754
BspEI TCCGGA 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 477
BspPI GGATC 1 cut(s) 71
BsrI ACTGG 2 cut(s) 409, 787
BssECI CCNNGG 3 cut(s) 156, 479, 597
BssMI GATC 2 cut(s) 50, 76
BssT1I CCWWGG 2 cut(s) 479, 597
Bst2UI CCWGG 3 cut(s) 114, 157, 858
Bst4CI ACNGT 1 cut(s) 652
Bst6I CTCTTC 1 cut(s) 276
BstC8I GCNNGC 2 cut(s) 510, 531
BstDEI CTNAG 1 cut(s) 568
BstDSI CCRYGG 1 cut(s) 597
BstEII GGTNACC 1 cut(s) 860
BstF5I GGATG 2 cut(s) 247, 853
BstKTI GATC 2 cut(s) 53, 79
BstMAI GTCTC 2 cut(s) 198, 906
BstMBI GATC 2 cut(s) 50, 76
BstNI CCWGG 3 cut(s) 114, 157, 858
BstNSI RCATGY 1 cut(s) 850
BstPI GGTNACC 1 cut(s) 860
BstSCI CCNGG 3 cut(s) 112, 155, 856
BstSLI GKGCMC 2 cut(s) 479, 535
BstV2I GAAGAC 1 cut(s) 585
BstXI CCANNNNNNTGG 1 cut(s) 872
BsuI GTATCC 1 cut(s) 110
BsuRI GGCC 3 cut(s) 477, 512, 754
BtgI CCRYGG 1 cut(s) 597
BtrI CACGTC 1 cut(s) 580
BtsCI GGATG 2 cut(s) 247, 853
BtsI GCAGTG 1 cut(s) 16
BtsIMutI CAGTG 1 cut(s) 16
Cac8I GCNNGC 2 cut(s) 510, 531
Cfr13I GGNCC 4 cut(s) 137, 406, 475, 476
Csp6I GTAC 1 cut(s) 780
CviAII CATG 4 cut(s) 598, 847, 866, 894
CviQI GTAC 1 cut(s) 780
DdeI CTNAG 1 cut(s) 568
DpnI GATC 2 cut(s) 52, 78
DpnII GATC 2 cut(s) 50, 76
DraIII CACNNNGTG 1 cut(s) 896
DriI GACNNNNNGTC 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 276
Eam1105I GACNNNNNGTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 276
Eco130I CCWWGG 2 cut(s) 479, 597
Eco24I GRGCYC 2 cut(s) 479, 890
Eco47I GGWCC 2 cut(s) 137, 406
Eco91I GGTNACC 1 cut(s) 860
EcoO109I RGGNCCY 2 cut(s) 475, 476
EcoO65I GGTNACC 1 cut(s) 860
EcoRI GAATTC 1 cut(s) 439
EcoRII CCWGG 3 cut(s) 112, 155, 856
EcoT14I CCWWGG 2 cut(s) 479, 597
EcoT22I ATGCAT 1 cut(s) 521
EcoT38I GRGCYC 2 cut(s) 479, 890
ErhI CCWWGG 2 cut(s) 479, 597
FaeI CATG 4 cut(s) 601, 850, 869, 897
FatI CATG 4 cut(s) 597, 846, 865, 893
FauNDI CATATG 1 cut(s) 515
FblI GTMKAC 1 cut(s) 576
FokI GGATG 2 cut(s) 234, 840
FriOI GRGCYC 2 cut(s) 479, 890
FspBI CTAG 2 cut(s) 734, 879
GsuI CTGGAG 1 cut(s) 410
HaeIII GGCC 3 cut(s) 477, 512, 754
HapII CCGG 1 cut(s) 80
Hin1II CATG 4 cut(s) 601, 850, 869, 897
HincII GTYRAC 2 cut(s) 153, 655
HindII GTYRAC 2 cut(s) 153, 655
HinfI GANTC 2 cut(s) 686, 723
HpaII CCGG 1 cut(s) 80
HphI GGTGA 6 cut(s) 26, 188, 308, 434, 872, 882
Hpy166II GTNNAC 3 cut(s) 153, 577, 655
Hpy188I TCNGA 7 cut(s) 55, 291, 336, 559, 648, 691, 730
Hpy188III TCNNGA 7 cut(s) 74, 80, 140, 389, 415, 673, 698
Hpy8I GTNNAC 3 cut(s) 153, 577, 655
HpyAV CCTTC 3 cut(s) 16, 50, 262
HpyCH4III ACNGT 1 cut(s) 652
HpyCH4IV ACGT 1 cut(s) 579
HpyCH4V TGCA 8 cut(s) 519, 554, 605, 611, 626, 662, 793, 948
HpyF3I CTNAG 1 cut(s) 568
HpySE526I ACGT 1 cut(s) 579
Hsp92II CATG 4 cut(s) 601, 850, 869, 897
Kpn2I TCCGGA 1 cut(s) 79
Kzo9I GATC 2 cut(s) 50, 76
LmnI GCTCC 3 cut(s) 25, 59, 505
LweI GCATC 1 cut(s) 563
MaeI CTAG 2 cut(s) 734, 879
MaeII ACGT 1 cut(s) 579
MaeIII GTNAC 1 cut(s) 860
MalI GATC 2 cut(s) 52, 78
MboI GATC 2 cut(s) 50, 76
MboII GAAGA 4 cut(s) 176, 293, 317, 585
MfeI CAATTG 2 cut(s) 85, 825
MhlI GDGCHC 3 cut(s) 479, 535, 890
MluCI AATT 7 cut(s) 85, 346, 439, 452, 522, 544, 825
MmeI TCCRAC 1 cut(s) 314
MnlI CCTC 5 cut(s) 128, 229, 271, 385, 483
Mph1103I ATGCAT 1 cut(s) 521
MroI TCCGGA 1 cut(s) 79
MroXI GAANNNNTTC 2 cut(s) 183, 285
MseI TTAA 6 cut(s) 162, 242, 264, 450, 900, 939
MslI CAYNNNNRTG 4 cut(s) 252, 814, 858, 870
MspI CCGG 1 cut(s) 80
MspR9I CCNGG 3 cut(s) 114, 157, 858
MunI CAATTG 2 cut(s) 85, 825
MvaI CCWGG 3 cut(s) 114, 157, 858
NcoI CCATGG 1 cut(s) 597
NdeI CATATG 1 cut(s) 515
NdeII GATC 2 cut(s) 50, 76
NlaIII CATG 4 cut(s) 601, 850, 869, 897
NlaIV GGNNCC 1 cut(s) 477
NmuCI GTSAC 1 cut(s) 860
NsiI ATGCAT 1 cut(s) 521
NspI RCATGY 1 cut(s) 850
PdmI GAANNNNTTC 2 cut(s) 183, 285
PfeI GAWTC 2 cut(s) 686, 723
PflMI CCANNNNNTGG 1 cut(s) 770
Psp6I CCWGG 3 cut(s) 112, 155, 856
PspEI GGTNACC 1 cut(s) 860
PspGI CCWGG 3 cut(s) 112, 155, 856
PspN4I GGNNCC 1 cut(s) 477
PspOMI GGGCCC 1 cut(s) 475
PspPI GGNCC 4 cut(s) 137, 406, 475, 476
RsaI GTAC 1 cut(s) 781
RsaNI GTAC 1 cut(s) 780
RseI CAYNNNNRTG 4 cut(s) 252, 814, 858, 870
SaqAI TTAA 6 cut(s) 162, 242, 264, 450, 900, 939
Sau3AI GATC 2 cut(s) 50, 76
Sau96I GGNCC 4 cut(s) 137, 406, 475, 476
ScaI AGTACT 1 cut(s) 781
ScrFI CCNGG 3 cut(s) 114, 157, 858
SduI GDGCHC 3 cut(s) 479, 535, 890
SfaNI GCATC 1 cut(s) 563
SinI GGWCC 2 cut(s) 137, 406
SmiMI CAYNNNNRTG 4 cut(s) 252, 814, 858, 870
Sse9I AATT 7 cut(s) 85, 346, 439, 452, 522, 544, 825
SsiI CCGC 1 cut(s) 743
SspMI CTAG 2 cut(s) 734, 879
StyD4I CCNGG 3 cut(s) 112, 155, 856
StyI CCWWGG 2 cut(s) 479, 597
TaaI ACNGT 1 cut(s) 652
TaiI ACGT 1 cut(s) 582
TaqI TCGA 3 cut(s) 204, 221, 672
TasI AATT 7 cut(s) 85, 346, 439, 452, 522, 544, 825
TatI WGTACW 1 cut(s) 779
TfiI GAWTC 2 cut(s) 686, 723
Tru1I TTAA 6 cut(s) 162, 242, 264, 450, 900, 939
Tru9I TTAA 6 cut(s) 162, 242, 264, 450, 900, 939
TscAI CASTG 1 cut(s) 16
TseFI GTSAC 1 cut(s) 860
Tsp45I GTSAC 1 cut(s) 860
TspDTI ATGAA 4 cut(s) 608, 842, 882, 933
TspRI CASTG 1 cut(s) 16
Van91I CCANNNNNTGG 1 cut(s) 770
VpaK11BI GGWCC 2 cut(s) 137, 406
XapI RAATTY 1 cut(s) 439
XceI RCATGY 1 cut(s) 850
XmiI GTMKAC 1 cut(s) 576
XmnI GAANNNNTTC 2 cut(s) 183, 285
XspI CTAG 2 cut(s) 734, 879
ZrmI AGTACT 1 cut(s) 781
Zsp2I ATGCAT 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.