pycom05g01540
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0012453
Physical Location & Seq
Forward (+)
1867552 .. 1871065
3514 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1446 bp
ATGGAAGGGAATTTATCACAAGGAGGAGGAGGTATGGTTCCGGGTGGGGCTTCGTTTGGGGGGCTTGATTTGCAAGGATCAATGAGGGGTCATCACCAAACCCAACACCCACACACCATACACCATCACCTTCCTCATCCTCATCAAGGGTCGTTGGTCCACCCATCAATTCCCGAAGGTTTTCCGCTCAAAATGGGAACCATGCATCACTGTGATCAAACCATTTCCATGGTGGATTACAATAAGGGGGAGAGGGGCAAGAACTCGGCAAGTGATGAGGATGAGCCGAGTTATGCGGAAGATGGTGCTGATGGTCACCCTGAAGCTGGTAAAGGGAAGAAGGGGTCGCCATGGCAGCGTGTGAAGTGGACTGATCAGATGGTGAAGCTTCTGATTACTGCTGTGTCATATATAGGTGAGGATACAGGTTCAGATTGCGGTAGCGGGGGAAGAAGGAAATATTCTGTTGTACAGAAGAAGGGAAAGTGGAAATCTGTTTCCAAGGTCATGGCAGAAAGAAGTTATCATGTTTCTCCGCAGCAGTGTGAGGATAAATTCAATGACCTTAACAAAAGGTATAAGAAACTTAACGATATGCTCGGGAGGGGCACTTCTTGCCAGGTTGTTGAGAACCCTGCACTTTTGGATGTGATAGAGTACCTAACAGAGAAAGAAAAAGACGATGTTAGGAAAATATTAAGCTCGAAGCACTTGTTTTATGAGGAGATGTGTTCTTATCATAATGGAAATCGTTTGCATCTTCCTCACGATCCAGCCTTGCAGAAATCTTTACAAAGGGCGCTTAAAAGAGATGATCCTGACAATGATGATCTGAGAAGGGAAAATGACGAGCATGACGACTTTGAGGAAAATAATGCTTTACGTGGAGATAACAGGGGAATATACATTTCAGAGGACTCTGTAAAGAGGTTGAGACAAGGCCAGGGCCGTGAAGATTTTAACTTTGGGAGTTCTTTGAATTCCCAAGACAGTAACAAAAGTTCTTATTCTCACCCCCAGATTCTTCCCCAACCTGATATGAATCAAGTTTTACCTGATGGTACAAAAGCTGTTTGGTTACAGAAGCAGTGGGTTGAATCGCGTTCATTTCAGTTAGAAGAACAGAAGCTACAAATTCAAGTTGAGATGTTAGAATTGGAGAAGCAACGTTTGAAGTGGCAAAGATTTAGCAAGAAAAGGGACCATGAACTGGAAAAGCTGAGGTTGGAAAATGAGAGGATGAAACTTGAGAATGAGCGTATGATATTAGAATTGAAACAGAAGGAAATGGGTGCTGGATTGGGACATCTAGGCAATGTTGATTCTCTCAAATTCGGTAAGCTGCAGTGGGTTCAAGTATCACATATTGTTCGGGGGAGCTTTCTTGGAACGACTCTACCTGGATATACAGCGGTTGTAGCTGTGGGTTTTAGCCCATTATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

482

Amino Acids

54.56

Weight (kDa)

6.77

Isoelectric Point (pI)

42.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 120 - 210 8.6e-17 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21200 AT1G21200
fragaria_vesca FvH4_2g13860 FvH4_2g13860
malus_domestica MD05G1024300.v1.1 MD10G1024800.v1.1
prunus_persica Prupe.8G028500_v2.0.a1
pyrus_communis pycom05g01540 pycom10g01640
rosa_chinensis RchiOBHm_Chr6g0275551
rosa_laevigata RLG00000013457
rosa_multiflora Rmu_ssc0000162.1_g000014
rosa_roxburghii Rroxscaffold_7G00193190
rosa_rugosa Rorug06G0093900
rosa_samantha Rh6AG206400 Rh6BG209400 Rh6CG211500 Rh6DG202000
rosa_wichuraiana Rw6G017910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1210
AccBSI CCGCTC 1 cut(s) 187
AccII CGCG 1 cut(s) 1102
AciI CCGC 6 cut(s) 185, 296, 438, 444, 536, 1412
AclI AACGTT 1 cut(s) 1168
AclWI GGATC 3 cut(s) 85, 764, 809
AcsI RAATTY 5 cut(s) 10, 554, 979, 1134, 1331
AcuI CTGAAG 1 cut(s) 342
AfaI GTAC 3 cut(s) 471, 659, 1063
AfiI CCNNNNNNNGG 3 cut(s) 146, 326, 1210
AgsI TTSAA 7 cut(s) 559, 979, 1097, 1139, 1174, 1276, 1355
AjnI CCWGG 3 cut(s) 618, 942, 1399
AloI GAACNNNNNNTCC 2 cut(s) 21, 53
AluBI AGCT 9 cut(s) 326, 388, 702, 1070, 1129, 1219, 1342, 1380, 1421
AluI AGCT 9 cut(s) 326, 388, 702, 1070, 1129, 1219, 1342, 1380, 1421
Alw26I GTCTC 1 cut(s) 928
AlwI GGATC 3 cut(s) 85, 764, 809
Ama87I CYCGRG 1 cut(s) 599
AoxI GGCC 2 cut(s) 940, 946
ApeKI GCWGC 3 cut(s) 355, 538, 1342
ApoI RAATTY 5 cut(s) 10, 554, 979, 1134, 1331
Asp700I GAANNNNTTC 1 cut(s) 180
AspLEI GCGC 1 cut(s) 802
AspS9I GGNCC 3 cut(s) 157, 946, 1201
AsuC2I CCSGG 1 cut(s) 42
AsuHPI GGTGA 6 cut(s) 86, 119, 308, 394, 428, 1004
AvaI CYCGRG 1 cut(s) 599
AvaII GGWCC 2 cut(s) 157, 1201
BaeGI GKGCMC 1 cut(s) 611
BbvCI CCTCAGC 1 cut(s) 1220
BbvI GCAGC 3 cut(s) 367, 550, 1329
BccI CCATC 6 cut(s) 132, 172, 296, 305, 373, 1052
BceAI ACGGC 1 cut(s) 933
BciT130I CCWGG 3 cut(s) 620, 944, 1401
BciVI GTATCC 1 cut(s) 415
BclI TGATCA 2 cut(s) 214, 373
BcnI CCSGG 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 928
BfaI CTAG 1 cut(s) 1310
BfmI CTRYAG 1 cut(s) 1343
BfoI RGCGCY 1 cut(s) 803
BfuI GTATCC 1 cut(s) 415
BisI GCNGC 3 cut(s) 356, 539, 1343
BlsI GCNGC 3 cut(s) 357, 540, 1344
Bme1390I CCNGG 4 cut(s) 42, 620, 944, 1401
Bme18I GGWCC 2 cut(s) 157, 1201
BmeT110I CYCGRG 1 cut(s) 599
BmgT120I GGNCC 3 cut(s) 157, 946, 1201
BmiI GGNNCC 3 cut(s) 39, 199, 1202
BmrFI CCNGG 4 cut(s) 42, 620, 944, 1401
BmsI GCATC 2 cut(s) 214, 766
Bpu10I CCTNAGC 1 cut(s) 1220
BpuEI CTTGAG 1 cut(s) 1268
BpuMI CCSGG 1 cut(s) 42
BsaAI YACGTR 1 cut(s) 884
BsaBI GATNNNNATC 1 cut(s) 1041
BsaJI CCNNGG 4 cut(s) 228, 350, 501, 943
BsaXI ACNNNNNCTCC 2 cut(s) 21, 51
Bsc4I CCNNNNNNNGG 3 cut(s) 146, 326, 1210
Bse1I ACTGG 1 cut(s) 1215
Bse3DI GCAATG 1 cut(s) 1321
Bse8I GATNNNNATC 1 cut(s) 1041
BseBI CCWGG 3 cut(s) 620, 944, 1401
BseDI CCNNGG 4 cut(s) 228, 350, 501, 943
BseGI GGATG 4 cut(s) 136, 286, 652, 1245
BseJI GATNNNNATC 1 cut(s) 1041
BseLI CCNNNNNNNGG 3 cut(s) 146, 326, 1210
BseMI GCAATG 1 cut(s) 1321
BseMII CTCAG 2 cut(s) 824, 1211
BseNI ACTGG 1 cut(s) 1215
BseRI GAGGAG 3 cut(s) 39, 42, 737
BseSI GKGCMC 1 cut(s) 611
BseXI GCAGC 3 cut(s) 367, 550, 1329
BsgI GTGCAG 1 cut(s) 621
Bsh1236I CGCG 1 cut(s) 1102
BshFI GGCC 2 cut(s) 942, 948
BsiHKCI CYCGRG 1 cut(s) 599
BsiSI CCGG 1 cut(s) 41
BslFI GGGAC 2 cut(s) 1214, 1317
BslI CCNNNNNNNGG 3 cut(s) 146, 326, 1210
BsmAI GTCTC 1 cut(s) 928
BsmFI GGGAC 2 cut(s) 1214, 1317
BsnI GGCC 2 cut(s) 942, 948
BsoBI CYCGRG 1 cut(s) 599
Bsp1286I GDGCHC 1 cut(s) 611
Bsp1407I TGTACA 1 cut(s) 469
Bsp143I GATC 6 cut(s) 77, 214, 373, 769, 814, 829
Bsp19I CCATGG 2 cut(s) 228, 350
BspACI CCGC 6 cut(s) 185, 296, 438, 444, 536, 1412
BspANI GGCC 2 cut(s) 942, 948
BspCNI CTCAG 2 cut(s) 825, 1212
BspFNI CGCG 1 cut(s) 1102
BspLI GGNNCC 3 cut(s) 39, 199, 1202
BspMAI CTGCAG 1 cut(s) 1347
BspPI GGATC 3 cut(s) 85, 764, 809
BsrBI CCGCTC 1 cut(s) 187
BsrDI GCAATG 1 cut(s) 1321
BsrGI TGTACA 1 cut(s) 469
BsrI ACTGG 1 cut(s) 1215
BssECI CCNNGG 4 cut(s) 228, 350, 501, 943
BssMI GATC 6 cut(s) 77, 214, 373, 769, 814, 829
BssT1I CCWWGG 3 cut(s) 228, 350, 501
Bst2UI CCWGG 3 cut(s) 620, 944, 1401
Bst4CI ACNGT 2 cut(s) 212, 992
BstAPI GCANNNNNTGC 1 cut(s) 615
BstAUI TGTACA 1 cut(s) 469
BstBAI YACGTR 1 cut(s) 884
BstDEI CTNAG 2 cut(s) 833, 1220
BstDSI CCRYGG 2 cut(s) 228, 350
BstEII GGTNACC 1 cut(s) 314
BstENI CCTNNNNNAGG 1 cut(s) 144
BstF5I GGATG 4 cut(s) 136, 286, 652, 1245
BstFNI CGCG 1 cut(s) 1102
BstH2I RGCGCY 1 cut(s) 803
BstHHI GCGC 1 cut(s) 802
BstKTI GATC 6 cut(s) 80, 217, 376, 772, 817, 832
BstMAI GTCTC 1 cut(s) 928
BstMBI GATC 6 cut(s) 77, 214, 373, 769, 814, 829
BstMWI GCNNNNNNNGC 4 cut(s) 70, 355, 615, 1418
BstNI CCWGG 3 cut(s) 620, 944, 1401
BstPI GGTNACC 1 cut(s) 314
BstSCI CCNGG 4 cut(s) 40, 618, 942, 1399
BstSFI CTRYAG 1 cut(s) 1343
BstSLI GKGCMC 1 cut(s) 611
BstUI CGCG 1 cut(s) 1102
BstV1I GCAGC 3 cut(s) 367, 550, 1329
BstXI CCANNNNNNTGG 2 cut(s) 229, 508
BsuI GTATCC 1 cut(s) 415
BsuRI GGCC 2 cut(s) 942, 948
BtgI CCRYGG 2 cut(s) 228, 350
BtsCI GGATG 4 cut(s) 136, 286, 652, 1245
BtsI GCAGTG 3 cut(s) 548, 1094, 1352
BtsIMutI CAGTG 4 cut(s) 208, 548, 1094, 1352
CfoI GCGC 1 cut(s) 802
Cfr13I GGNCC 3 cut(s) 157, 946, 1201
Csp6I GTAC 3 cut(s) 470, 658, 1062
CviAII CATG 7 cut(s) 202, 229, 351, 508, 527, 854, 1205
CviQI GTAC 3 cut(s) 470, 658, 1062
DdeI CTNAG 2 cut(s) 833, 1220
DpnI GATC 6 cut(s) 79, 216, 375, 771, 816, 831
DpnII GATC 6 cut(s) 77, 214, 373, 769, 814, 829
Eco130I CCWWGG 3 cut(s) 228, 350, 501
Eco47I GGWCC 2 cut(s) 157, 1201
Eco57I CTGAAG 1 cut(s) 342
Eco88I CYCGRG 1 cut(s) 599
Eco91I GGTNACC 1 cut(s) 314
EcoNI CCTNNNNNAGG 1 cut(s) 144
EcoO65I GGTNACC 1 cut(s) 314
EcoRI GAATTC 1 cut(s) 979
EcoRII CCWGG 3 cut(s) 618, 942, 1399
EcoT14I CCWWGG 3 cut(s) 228, 350, 501
EcoT22I ATGCAT 1 cut(s) 207
ErhI CCWWGG 3 cut(s) 228, 350, 501
FaeI CATG 7 cut(s) 205, 232, 354, 511, 530, 857, 1208
FaqI GGGAC 2 cut(s) 1214, 1317
FatI CATG 7 cut(s) 201, 228, 350, 507, 526, 853, 1204
FauI CCCGC 1 cut(s) 437
FbaI TGATCA 2 cut(s) 214, 373
Fnu4HI GCNGC 3 cut(s) 356, 539, 1343
FokI GGATG 4 cut(s) 123, 293, 659, 1252
Fsp4HI GCNGC 3 cut(s) 356, 539, 1343
FspBI CTAG 1 cut(s) 1310
GlaI GCGC 1 cut(s) 801
GluI GCNGC 3 cut(s) 356, 539, 1343
HaeII RGCGCY 1 cut(s) 803
HaeIII GGCC 2 cut(s) 942, 948
HapII CCGG 1 cut(s) 41
HhaI GCGC 1 cut(s) 802
Hin1II CATG 7 cut(s) 205, 232, 354, 511, 530, 857, 1208
Hin6I GCGC 1 cut(s) 800
HinP1I GCGC 1 cut(s) 800
HindIII AAGCTT 1 cut(s) 386
HinfI GANTC 6 cut(s) 917, 1021, 1042, 1097, 1322, 1393
HpaII CCGG 1 cut(s) 41
HphI GGTGA 6 cut(s) 86, 119, 308, 394, 428, 1004
Hpy166II GTNNAC 2 cut(s) 160, 369
Hpy188I TCNGA 5 cut(s) 378, 393, 433, 834, 913
Hpy188III TCNNGA 4 cut(s) 173, 601, 767, 818
Hpy8I GTNNAC 2 cut(s) 160, 369
HpyAV CCTTC 7 cut(s) 140, 170, 334, 447, 472, 831, 1276
HpyCH4III ACNGT 2 cut(s) 212, 992
HpyCH4IV ACGT 2 cut(s) 883, 1168
HpyCH4V TGCA 6 cut(s) 73, 205, 638, 757, 781, 1345
HpyF10VI GCNNNNNNNGC 4 cut(s) 70, 355, 615, 1418
HpyF3I CTNAG 2 cut(s) 833, 1220
HpySE526I ACGT 2 cut(s) 883, 1168
Hsp92II CATG 7 cut(s) 205, 232, 354, 511, 530, 857, 1208
HspAI GCGC 1 cut(s) 800
Ksp22I TGATCA 2 cut(s) 214, 373
Kzo9I GATC 6 cut(s) 77, 214, 373, 769, 814, 829
LmnI GCTCC 1 cut(s) 1377
Lsp1109I GCAGC 3 cut(s) 367, 550, 1329
LweI GCATC 2 cut(s) 214, 766
MaeI CTAG 1 cut(s) 1310
MaeII ACGT 2 cut(s) 883, 1168
MaeIII GTNAC 3 cut(s) 314, 992, 1077
MalI GATC 6 cut(s) 79, 216, 375, 771, 816, 831
MbiI CCGCTC 1 cut(s) 187
MboI GATC 6 cut(s) 77, 214, 373, 769, 814, 829
MboII GAAGA 8 cut(s) 311, 349, 462, 487, 752, 965, 1016, 1130
MhlI GDGCHC 1 cut(s) 611
MluCI AATT 8 cut(s) 10, 168, 554, 979, 1134, 1154, 1271, 1331
MlyI GAGTC 2 cut(s) 911, 1387
MmeI TCCRAC 1 cut(s) 1206
Mph1103I ATGCAT 1 cut(s) 207
MroXI GAANNNNTTC 1 cut(s) 180
MseI TTAA 5 cut(s) 567, 588, 698, 804, 960
MslI CAYNNNNRTG 3 cut(s) 210, 227, 1441
MspA1I CMGCKG 1 cut(s) 1412
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 4 cut(s) 42, 620, 944, 1401
MvaI CCWGG 3 cut(s) 620, 944, 1401
MvnI CGCG 1 cut(s) 1102
MwoI GCNNNNNNNGC 4 cut(s) 70, 355, 615, 1418
NciI CCSGG 1 cut(s) 42
NcoI CCATGG 2 cut(s) 228, 350
NdeII GATC 6 cut(s) 77, 214, 373, 769, 814, 829
NlaIII CATG 7 cut(s) 205, 232, 354, 511, 530, 857, 1208
NlaIV GGNNCC 3 cut(s) 39, 199, 1202
NmeAIII GCCGAG 2 cut(s) 245, 312
NmuCI GTSAC 1 cut(s) 314
NsiI ATGCAT 1 cut(s) 207
PcsI WCGNNNNNNNCGW 1 cut(s) 855
PdmI GAANNNNTTC 1 cut(s) 180
PfeI GAWTC 4 cut(s) 1021, 1042, 1097, 1322
PflMI CCANNNNNTGG 1 cut(s) 1210
PkrI GCNGC 3 cut(s) 357, 540, 1344
PleI GAGTC 2 cut(s) 911, 1387
PpsI GAGTC 2 cut(s) 911, 1387
Ppu21I YACGTR 1 cut(s) 884
Psp1406I AACGTT 1 cut(s) 1168
Psp6I CCWGG 3 cut(s) 618, 942, 1399
PspEI GGTNACC 1 cut(s) 314
PspGI CCWGG 3 cut(s) 618, 942, 1399
PspN4I GGNNCC 3 cut(s) 39, 199, 1202
PspPI GGNCC 3 cut(s) 157, 946, 1201
PsrI GAACNNNNNNTAC 4 cut(s) 985, 1017, 1113, 1145
PstI CTGCAG 1 cut(s) 1347
RsaI GTAC 3 cut(s) 471, 659, 1063
RsaNI GTAC 3 cut(s) 470, 658, 1062
RseI CAYNNNNRTG 3 cut(s) 210, 227, 1441
SaqAI TTAA 5 cut(s) 567, 588, 698, 804, 960
SatI GCNGC 3 cut(s) 356, 539, 1343
Sau3AI GATC 6 cut(s) 77, 214, 373, 769, 814, 829
Sau96I GGNCC 3 cut(s) 157, 946, 1201
SchI GAGTC 2 cut(s) 911, 1387
ScrFI CCNGG 4 cut(s) 42, 620, 944, 1401
SduI GDGCHC 1 cut(s) 611
SfaNI GCATC 2 cut(s) 214, 766
SfcI CTRYAG 1 cut(s) 1343
SinI GGWCC 2 cut(s) 157, 1201
SmiMI CAYNNNNRTG 3 cut(s) 210, 227, 1441
SmlI CTYRAG 1 cut(s) 1247
SmoI CTYRAG 1 cut(s) 1247
Sse9I AATT 8 cut(s) 10, 168, 554, 979, 1134, 1154, 1271, 1331
SsiI CCGC 6 cut(s) 185, 296, 438, 444, 536, 1412
SspI AATATT 2 cut(s) 461, 696
SspMI CTAG 1 cut(s) 1310
StyD4I CCNGG 4 cut(s) 40, 618, 942, 1399
StyI CCWWGG 3 cut(s) 228, 350, 501
TaaI ACNGT 2 cut(s) 212, 992
TaiI ACGT 2 cut(s) 886, 1171
TaqI TCGA 1 cut(s) 704
TasI AATT 8 cut(s) 10, 168, 554, 979, 1134, 1154, 1271, 1331
TatI WGTACW 1 cut(s) 469
TfiI GAWTC 4 cut(s) 1021, 1042, 1097, 1322
Tru1I TTAA 5 cut(s) 567, 588, 698, 804, 960
Tru9I TTAA 5 cut(s) 567, 588, 698, 804, 960
TscAI CASTG 4 cut(s) 215, 548, 1094, 1352
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 3 cut(s) 355, 538, 1342
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 4 cut(s) 1055, 1095, 1221, 1256
TspRI CASTG 4 cut(s) 215, 548, 1094, 1352
Van91I CCANNNNNTGG 1 cut(s) 1210
VpaK11BI GGWCC 2 cut(s) 157, 1201
XagI CCTNNNNNAGG 1 cut(s) 144
XapI RAATTY 5 cut(s) 10, 554, 979, 1134, 1331
XcmI CCANNNNNNNNNTGG 1 cut(s) 229
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 1 cut(s) 1310
Zsp2I ATGCAT 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.