Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005040

Physical Location & Seq

Genomic Coordinates Reverse (-)

2298046 .. 2308576

Gene Structure 10531 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2718 bp

ATGTGTATACTTCAGGATTTTGAGGCCTTGACTCCAAATCTACTAGCAAGAACAATAGAGACGGTGGAGGGAGGTGGACTAGTCATATTGTTGCTTCGTTCTCTAACCTCACTCACTAACCTCTACACCATGGTTATGGATGTTCATGATAGGTTTCGAACTGAATCCCATTCTAAGGCTACTGGACGTTTTAACGAGCGTTTCTTATTATCACTTGCGTCATGCAAATCATGTGCAGTAATGGATGATGAGCTGAATATTTTACCAATTTCATCTCATGTGAGGTCAATTACCCCAGTTCCAGTGAAAGAGGACTCTGAAGGGATATCAGAGTCACAAAGGGAACTGAAGGATCTAAAAGAGCAGCTGAGCGATGCCTTTCCTGTTGGCCCTTTAATAAAGAAATGTTGTACGTTGGACCAGGGAAATGCTGTTGCTACATTTCTTGATGCAATCTTGGACAAGACACTCCGAAGTACTGTTGCCTTGCTTGCTGCTCGAGGCCGTGGAAAATCGGCTGCACTTGGTTTGTCAATTTCCGGAGCTATTGCTGCAGGGTATTCAAATATATTTGTAACTGCACCCAGCCCTGAGAACTTAAGAACCTTGTTTGAATTTGTTTGCAAGGGTTTTGATCAACTGGACTATAAGGAACATATAGATTATGATGTACAGAAAAGTAGCGACCCTTCGTTGAAGAAAGCAACTGTACAGATCAATATATACAAGCAGCACAGACAAACAATTCAGTATATACGGCCACATGAGCATGAAAAGCTTTCCCAAGTTGAACTGTTGGTTGTTGATGAAGCAGCTGCTATTCCACTACCAGTAGTGAAGTCTTTGCTTGGTCCTTATCTGGTCTTCCTTTCATCTACTGTTAATGGCTATGAAGGTACTGGTCGGTCTTTGTCCCTAAAACTTCTACAGCAATTGGAAGAGCAAAGCCAAGTGTCTGCTAAAGGGCCTACATCTGGTCGTCTTTTCAAAAAGATAGAATTGAAAGAATCAATCAGATATGCTTCTGGTGATCCGATTGAATCCTGGCTTCATGGTTTACTTTGCTTGGATATCACAAATTATATCCCTAAACTTAACGGGTTACCTGCACCCAGTGAGTGTGATCTGTACTACGTTAACCGTGATACGCTTTTTTCATATCATAAAGATAGCGAGTTGTTCTTACAGCGGATGATGGCTCTATATGTTGCCTCCCACTACAAAAATTCTCCAAATGATTTGCAACTAATGGCTGATGCCCCGGCTCACCACTTGTTTGTGCTACTTGGCCCTGTTGATGAGTCAAAAAATCAGCTTCCTGATATTTTGTGTGTCATTCAGGTCTGCCTTGAGGGAAAGATCTCTCGTGAATCTGCAATGAAAAGTTTAAGCGATGGTCATCAGCCATCCGGTGACCAGATACCATGGAAATTCTGTGAGCAATTTCAGGACACGGTTTTTCCCAGTCTTTCAGGTGCTCGGATTGTACGAATTGCTACACATCCAAGTGCCATGAAGATTGGATATGGATCACAAGCAGTGGAACTATTGACAAGGTACTACGAAGGACAGTTTGCTCCTATTTCTGAACTGGACGTTGAAGATGTTGAGACTCCCCCACTCAGAGTCACAGAAGCTGCTGAGAAGGTTTCATTGCTGGAAGAAAGTATAAAACCTAGAACAGATCGTCCTCATTTGCTCGTTCATCTTCGTGAAAGGCGACCAGAGAAGCTCCATTATATTGGTGTCTCCTTTGGGCTTACCTTGGACCTTTTCAGATTTTGGTGGAAACATAAGTTTGCTCCATTCTATATTGGACATATTCCAAGTGCTGTGACCGGGGAGCATACGTGTATGGTCCTCAAATCTTTGAAGAATGATGAACTTGAAACCAGTGATTTTCGTCCATTCTACCTAGATTTCAGGAGAAGATTTTTGAGACTATTGGGTTATAGTTTTCGTACAATGGATTATAGGCTCGCTATGAGCATCTTAGATCCTAAGATCAATTACAAGGATGTAGAACCGAAATCGTCTACTGCAGATGGATTCTTACGGTCTATCACAGACTTACTTTCGCCTTATGATATGAAGCGACTGGAGGCCTACACCAGCAGTCTTGCTGACTTTCATATGATTTTGGATCTTGTTCCAACGCTTTCACATCTGTATTTCCAAGAGAAACTTCCGGTGACATTGACAGGTGCCCAGGCTTCCATATTGCTTTGCATTGGCTTACAGAATCAAGATATCTCCTATATTGAGGGGTTGATGAAACTGGAAAGGCAGCAAATATTGTCTCTGTTTATAAAAGTTATGAAAAAGTTTCACAAATATCTATACGCTATTGCATCTGAGGGCCTCGGGTCAACCTTGCCTAAACCAAAAGAAACTCTCTTGGAACCTCACAAAATCTCCGTTGACGATGATCTCAATGATGCTGCAAGAAAAGTTGAGGATGGGATGAGATCCAACTCGGAGGGGTCATTAGATCCCAAGTTGCTTCAACAGTACGCGATTGGGGACAGAGACGCAGACTTTGAGAATGCATTACAGAATAGCGGTGCAAACTTACCGGCTGGTGGTCTTGTTAGCGTGAAATCAAGTAGACACAAAATGGATAAAGGAAAACAGAGGGAGAATCACAAGAGTGGGGAAAAGCGACGTAAAAATGAGCATGGCTCCAACTCAAAGTCCAACAAAAAGAAGAAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0000154 GO:0002097 GO:0002101 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008080 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0022613 GO:0030490 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0051391 GO:0051392 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1904812 GO:1990882 GO:1990883 GO:1990884 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

DUF1726 GNAT_acetyltr_2 Helicase_RecD tRNA_bind_2

Protein Analysis

906

Amino Acids

101.72

Weight (kDa)

6.99

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TmcA_N	PF08351	7 - 82	1.7e-07	tRNA(Met) cytidine acetyltransferase TmcA, N-terminal
NAT10_TcmA_helicase	PF05127	163 - 357	1e-55	RNA cytidine acetyltransferase NAT10/TcmA, helicase domain
GNAT_acetyltr_2	PF13718	397 - 625	1.3e-95	GNAT acetyltransferase 2
tRNA_bind_2	PF13725	635 - 850	6.3e-67	Possible tRNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10490 AT1G10490 AT3G57940 AT3G57940
fragaria_vesca	FvH4_1g22910 FvH4_1g22910 FvH4_1g22910 FvH4_1g22910 FvH4_1g22910 FvH4_1g22910 FvH4_1g22910 FvH4_1g22910
malus_domestica	MD05G1028000.v1.1 MD10G1028600.v1.1
prunus_persica	Prupe.6G169200_v2.0.a1
pyrus_communis	pycom05g02010 pycom10g01860
rosa_chinensis	RchiOBHm_Chr2g0117351
rosa_laevigata	RLG00000018344
rosa_multiflora	Rmu_co7970672.1_g000001 Rmu_sc0004436.1_g000001 Rmu_sc0013504.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126550
rosa_rugosa	Rorug02G0212300 Rorug02G0212400
rosa_samantha	Rh2AG267400 Rh2BG279800 Rh2DG274500 Rh2DG293800
rosa_wichuraiana	Rw2G021170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2309
Acc36I	ACCTGC	1 cut(s)	1114
AccB1I	GGYRCC	1 cut(s)	2204
AccI	GTMKAC	3 cut(s)	7, 2036, 2608
AccII	CGCG	1 cut(s)	2516
AccIII	TCCGGA	1 cut(s)	539
AciI	CCGC	2 cut(s)	1189, 2562
AclWI	GGATC	7 cut(s)	360, 1025, 1537, 1991, 2151, 2463, 2486
AcoI	YGGCCR	1 cut(s)	758
AcsI	RAATTY	3 cut(s)	614, 1225, 1430
AcuI	CTGAAG	2 cut(s)	339, 368
AdeI	CACNNNGTG	1 cut(s)	1115
AfiI	CCNNNNNNNGG	3 cut(s)	175, 974, 2582
AflII	CTTAAG	1 cut(s)	598
AflIII	ACRYGT	1 cut(s)	1850
AhlI	ACTAGT	1 cut(s)	79
AjnI	CCWGG	3 cut(s)	420, 1043, 2208
AjuI	GAANNNNNNNTTGG	2 cut(s)	2169, 2201
AleI	CACNNNNGTG	1 cut(s)	2649
AloI	GAACNNNNNNTCC	2 cut(s)	1672, 1704
AluBI	AGCT	8 cut(s)	253, 367, 545, 778, 815, 1315, 1637, 1732
AluI	AGCT	8 cut(s)	253, 367, 545, 778, 815, 1315, 1637, 1732
Alw21I	GWGCWC	1 cut(s)	1480
Alw26I	GTCTC	6 cut(s)	53, 1604, 1753, 1933, 2304, 2523
AlwI	GGATC	7 cut(s)	360, 1025, 1537, 1991, 2151, 2463, 2486
AlwNI	CAGNNNCTG	1 cut(s)	1637
Ama87I	CYCGRG	2 cut(s)	498, 2363
Aor13HI	TCCGGA	1 cut(s)	539
AoxI	GGCC	8 cut(s)	24, 388, 502, 758, 965, 1288, 2103, 2359
ApoI	RAATTY	3 cut(s)	614, 1225, 1430
ArsI	GACNNNNNNTTYG	2 cut(s)	2522, 2554
AspS9I	GGNCC	8 cut(s)	389, 418, 851, 965, 1289, 1768, 1858, 2359
AsuC2I	CCSGG	2 cut(s)	1262, 1840
AsuHPI	GGTGA	4 cut(s)	1040, 1259, 1424, 2203
AsuII	TTCGAA	1 cut(s)	157
AvaI	CYCGRG	2 cut(s)	498, 2363
AvaII	GGWCC	4 cut(s)	418, 851, 1768, 1858
BaeGI	GKGCMC	1 cut(s)	2209
BanI	GGYRCC	1 cut(s)	2204
BarI	GAAGNNNNNNTAC	2 cut(s)	673, 705
BauI	CACGAG	1 cut(s)	1365
BbsI	GAAGAC	1 cut(s)	856
Bbv12I	GWGCWC	1 cut(s)	1480
BccI	CCATC	5 cut(s)	1189, 1388, 1414, 2039, 2453
BceAI	ACGGC	2 cut(s)	489, 773
BciT130I	CCWGG	3 cut(s)	422, 1045, 2210
BclI	TGATCA	1 cut(s)	634
BcnI	CCSGG	2 cut(s)	1262, 1840
BcoDI	GTCTC	6 cut(s)	53, 1604, 1753, 1933, 2304, 2523
BcuI	ACTAGT	1 cut(s)	79
BfaI	CTAG	4 cut(s)	44, 80, 1677, 1916
BfmI	CTRYAG	3 cut(s)	552, 926, 2040
BfrI	CTTAAG	1 cut(s)	598
BfuAI	ACCTGC	1 cut(s)	1114
BglII	AGATCT	1 cut(s)	1359
BlpI	GCTNAGC	1 cut(s)	368
BmcAI	AGTACT	1 cut(s)	478
Bme1390I	CCNGG	5 cut(s)	422, 1045, 1262, 1840, 2210
Bme18I	GGWCC	4 cut(s)	418, 851, 1768, 1858
BmeT110I	CYCGRG	2 cut(s)	498, 2363
BmgT120I	GGNCC	8 cut(s)	389, 418, 851, 965, 1289, 1768, 1858, 2359
BmiI	GGNNCC	3 cut(s)	2206, 2403, 2683
BmrFI	CCNGG	5 cut(s)	422, 1045, 1262, 1840, 2210
BmrI	ACTGGG	3 cut(s)	290, 1107, 1458
BmsI	GCATC	6 cut(s)	364, 439, 1246, 1998, 2360, 2428
BmuI	ACTGGG	3 cut(s)	290, 1107, 1458
BpiI	GAAGAC	1 cut(s)	856
BplI	GAGNNNNNCTC	2 cut(s)	2666, 2698
BpmI	CTGGAG	1 cut(s)	2120
Bpu1102I	GCTNAGC	1 cut(s)	368
Bpu14I	TTCGAA	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	1370
BpuMI	CCSGG	2 cut(s)	1262, 1840
BsaAI	YACGTR	1 cut(s)	1851
BsaBI	GATNNNNATC	2 cut(s)	1398, 1528
BsaJI	CCNNGG	9 cut(s)	129, 421, 505, 1260, 1424, 1764, 1839, 2208, 2362
BsaWI	WCCGGW	3 cut(s)	539, 1409, 2188
BsaXI	ACNNNNNCTCC	4 cut(s)	1835, 1865, 2399, 2429
Bsc4I	CCNNNNNNNGG	3 cut(s)	175, 974, 2582
Bse118I	RCCGGY	1 cut(s)	2575
Bse3DI	GCAATG	2 cut(s)	1383, 1652
Bse8I	GATNNNNATC	2 cut(s)	1398, 1528
BseAI	TCCGGA	1 cut(s)	539
BseBI	CCWGG	3 cut(s)	422, 1045, 2210
BseDI	CCNNGG	9 cut(s)	129, 421, 505, 1260, 1424, 1764, 1839, 2208, 2362
BseGI	GGATG	8 cut(s)	145, 250, 1197, 1406, 1501, 2023, 2464, 2469
BseJI	GATNNNNATC	2 cut(s)	1398, 1528
BseLI	CCNNNNNNNGG	3 cut(s)	175, 974, 2582
BseMI	GCAATG	2 cut(s)	1383, 1652
BseMII	CTCAG	5 cut(s)	359, 582, 1632, 1636, 2346
BseSI	GKGCMC	1 cut(s)	2209
BseYI	CCCAGC	1 cut(s)	584
BsgI	GTGCAG	4 cut(s)	255, 504, 564, 1092
Bsh1236I	CGCG	1 cut(s)	2516
BshFI	GGCC	8 cut(s)	26, 390, 504, 760, 967, 1290, 2105, 2361
BshNI	GGYRCC	1 cut(s)	2204
BsiHKAI	GWGCWC	1 cut(s)	1480
BsiHKCI	CYCGRG	2 cut(s)	498, 2363
BsiSI	CCGG	6 cut(s)	540, 1262, 1410, 1839, 2189, 2576
BslFI	GGGAC	2 cut(s)	898, 2537
BslI	CCNNNNNNNGG	3 cut(s)	175, 974, 2582
BsmAI	GTCTC	6 cut(s)	53, 1604, 1753, 1933, 2304, 2523
BsmBI	CGTCTC	2 cut(s)	53, 2523
BsmFI	GGGAC	2 cut(s)	898, 2537
BsmI	GAATGC	1 cut(s)	2551
BsnI	GGCC	8 cut(s)	26, 390, 504, 760, 967, 1290, 2105, 2361
BsoBI	CYCGRG	2 cut(s)	498, 2363
Bsp119I	TTCGAA	1 cut(s)	157
Bsp1286I	GDGCHC	2 cut(s)	1480, 2209
Bsp13I	TCCGGA	1 cut(s)	539
Bsp1407I	TGTACA	2 cut(s)	670, 709
Bsp1720I	GCTNAGC	1 cut(s)	368
Bsp19I	CCATGG	2 cut(s)	129, 1424
BspACI	CCGC	2 cut(s)	1189, 2562
BspANI	GGCC	8 cut(s)	26, 390, 504, 760, 967, 1290, 2105, 2361
BspCNI	CTCAG	5 cut(s)	360, 583, 1633, 1635, 2347
BspEI	TCCGGA	1 cut(s)	539
BspFNI	CGCG	1 cut(s)	2516
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	3 cut(s)	2206, 2403, 2683
BspMAI	CTGCAG	2 cut(s)	556, 2044
BspMI	ACCTGC	1 cut(s)	1114
BspPI	GGATC	7 cut(s)	360, 1025, 1537, 1991, 2151, 2463, 2486
BspQI	GCTCTTC	1 cut(s)	933
BspT104I	TTCGAA	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	2204
BspTI	CTTAAG	1 cut(s)	598
BsrDI	GCAATG	2 cut(s)	1383, 1652
BsrFI	RCCGGY	1 cut(s)	2575
BsrGI	TGTACA	2 cut(s)	670, 709
BssAI	RCCGGY	1 cut(s)	2575
BssECI	CCNNGG	9 cut(s)	129, 421, 505, 1260, 1424, 1764, 1839, 2208, 2362
BssNAI	GTATAC	1 cut(s)	8
BssSI	CACGAG	1 cut(s)	1365
BssT1I	CCWWGG	3 cut(s)	129, 1424, 1764
Bst1107I	GTATAC	1 cut(s)	8
Bst2BI	CACGAG	1 cut(s)	1365
Bst2UI	CCWGG	3 cut(s)	422, 1045, 2210
Bst6I	CTCTTC	1 cut(s)	933
BstAFI	CTTAAG	1 cut(s)	598
BstAUI	TGTACA	2 cut(s)	670, 709
BstBAI	YACGTR	1 cut(s)	1851
BstBI	TTCGAA	1 cut(s)	157
BstC8I	GCNNGC	2 cut(s)	492, 1980
BstDEI	CTNAG	8 cut(s)	174, 368, 591, 1622, 1641, 1993, 2001, 2355
BstDSI	CCRYGG	3 cut(s)	129, 505, 1424
BstEII	GGTNACC	2 cut(s)	1101, 1412
BstF5I	GGATG	8 cut(s)	145, 250, 1197, 1406, 1501, 2023, 2464, 2469
BstFNI	CGCG	1 cut(s)	2516
BstMAI	GTCTC	6 cut(s)	53, 1604, 1753, 1933, 2304, 2523
BstMWI	GCNNNNNNNGC	4 cut(s)	491, 551, 766, 775
BstNI	CCWGG	3 cut(s)	422, 1045, 2210
BstPI	GGTNACC	2 cut(s)	1101, 1412
BstSCI	CCNGG	5 cut(s)	420, 1043, 1260, 1838, 2208
BstSFI	CTRYAG	3 cut(s)	552, 926, 2040
BstSLI	GKGCMC	1 cut(s)	2209
BstUI	CGCG	1 cut(s)	2516
BstV2I	GAAGAC	1 cut(s)	856
BstX2I	RGATCY	6 cut(s)	352, 1359, 1996, 2143, 2468, 2491
BstXI	CCANNNNNNTGG	2 cut(s)	136, 1742
BstYI	RGATCY	6 cut(s)	352, 1359, 1996, 2143, 2468, 2491
BstZ17I	GTATAC	1 cut(s)	8
BsuRI	GGCC	8 cut(s)	26, 390, 504, 760, 967, 1290, 2105, 2361
BtgI	CCRYGG	3 cut(s)	129, 505, 1424
BtgZI	GCGATG	2 cut(s)	387, 1407
BtsCI	GGATG	8 cut(s)	145, 250, 1197, 1406, 1501, 2023, 2464, 2469
BtsI	GCAGTG	1 cut(s)	1545
BtsIMutI	CAGTG	4 cut(s)	309, 1120, 1545, 1900
BveI	ACCTGC	1 cut(s)	1114
Cac8I	GCNNGC	2 cut(s)	492, 1980
CaiI	CAGNNNCTG	1 cut(s)	1637
CciI	TCATGA	1 cut(s)	145
Cfr10I	RCCGGY	1 cut(s)	2575
Cfr13I	GGNCC	8 cut(s)	389, 418, 851, 965, 1289, 1768, 1858, 2359
CseI	GACGC	2 cut(s)	207, 2540
DdeI	CTNAG	8 cut(s)	174, 368, 591, 1622, 1641, 1993, 2001, 2355
DraIII	CACNNNGTG	1 cut(s)	1115
EaeI	YGGCCR	1 cut(s)	758
Eam1104I	CTCTTC	1 cut(s)	933
EarI	CTCTTC	1 cut(s)	933
Eco130I	CCWWGG	3 cut(s)	129, 1424, 1764
Eco147I	AGGCCT	2 cut(s)	26, 2105
Eco32I	GATATC	3 cut(s)	327, 1072, 2251
Eco47I	GGWCC	4 cut(s)	418, 851, 1768, 1858
Eco57I	CTGAAG	2 cut(s)	339, 368
Eco88I	CYCGRG	2 cut(s)	498, 2363
Eco91I	GGTNACC	2 cut(s)	1101, 1412
EcoO109I	RGGNCCY	2 cut(s)	965, 2359
EcoO65I	GGTNACC	2 cut(s)	1101, 1412
EcoRII	CCWGG	3 cut(s)	420, 1043, 2208
EcoRV	GATATC	3 cut(s)	327, 1072, 2251
EcoT14I	CCWWGG	3 cut(s)	129, 1424, 1764
EcoT22I	ATGCAT	1 cut(s)	2551
ErhI	CCWWGG	3 cut(s)	129, 1424, 1764
Esp3I	CGTCTC	2 cut(s)	53, 2523
FalI	AAGNNNNNCTT	2 cut(s)	2169, 2201
FaqI	GGGAC	2 cut(s)	898, 2537
FauNDI	CATATG	1 cut(s)	2133
FbaI	TGATCA	1 cut(s)	634
FblI	GTMKAC	3 cut(s)	7, 2036, 2608
FokI	GGATG	8 cut(s)	152, 257, 1204, 1393, 1488, 2030, 2471, 2476
FspBI	CTAG	4 cut(s)	44, 80, 1677, 1916
GsaI	CCCAGC	1 cut(s)	588
GsuI	CTGGAG	1 cut(s)	2120
HaeIII	GGCC	8 cut(s)	26, 390, 504, 760, 967, 1290, 2105, 2361
HapII	CCGG	6 cut(s)	540, 1262, 1410, 1839, 2189, 2576
HgaI	GACGC	2 cut(s)	207, 2540
HincII	GTYRAC	3 cut(s)	1138, 2370, 2422
HindII	GTYRAC	3 cut(s)	1138, 2370, 2422
HindIII	AAGCTT	1 cut(s)	776
HpaI	GTTAAC	1 cut(s)	1138
HpaII	CCGG	6 cut(s)	540, 1262, 1410, 1839, 2189, 2576
HphI	GGTGA	4 cut(s)	1040, 1259, 1424, 2203
Hpy166II	GTNNAC	8 cut(s)	8, 77, 1058, 1138, 2037, 2370, 2422, 2609
Hpy8I	GTNNAC	8 cut(s)	8, 77, 1058, 1138, 2037, 2370, 2422, 2609
Hpy99I	CGWCG	1 cut(s)	2667
HpyAV	CCTTC	6 cut(s)	314, 343, 699, 887, 1559, 1639
HpyCH4IV	ACGT	6 cut(s)	187, 413, 1134, 1596, 1850, 2665
HpyF10VI	GCNNNNNNNGC	4 cut(s)	491, 551, 766, 775
HpyF3I	CTNAG	8 cut(s)	174, 368, 591, 1622, 1641, 1993, 2001, 2355
HpySE526I	ACGT	6 cut(s)	187, 413, 1134, 1596, 1850, 2665
Kpn2I	TCCGGA	1 cut(s)	539
Ksp22I	TGATCA	1 cut(s)	634
KspAI	GTTAAC	1 cut(s)	1138
LguI	GCTCTTC	1 cut(s)	933
LmnI	GCTCC	6 cut(s)	542, 1582, 1737, 1807, 1843, 2687
LweI	GCATC	6 cut(s)	364, 439, 1246, 1998, 2360, 2428
MaeI	CTAG	4 cut(s)	44, 80, 1677, 1916
MaeII	ACGT	6 cut(s)	187, 413, 1134, 1596, 1850, 2665
MaeIII	GTNAC	7 cut(s)	333, 574, 1101, 1412, 1627, 1834, 2191
MboII	GAAGA	9 cut(s)	709, 856, 950, 1528, 1613, 1673, 1700, 1885, 1941
MfeI	CAATTG	1 cut(s)	932
MflI	RGATCY	6 cut(s)	352, 1359, 1996, 2143, 2468, 2491
MhlI	GDGCHC	2 cut(s)	1480, 2209
MlyI	GAGTC	6 cut(s)	25, 308, 341, 1310, 1606, 1635
MmeI	TCCRAC	4 cut(s)	396, 2177, 2496, 2709
Mph1103I	ATGCAT	1 cut(s)	2551
MroI	TCCGGA	1 cut(s)	539
MseI	TTAA	7 cut(s)	192, 395, 599, 882, 1095, 1137, 1388
MslI	CAYNNNNRTG	5 cut(s)	134, 768, 1506, 1710, 2649
MspA1I	CMGCKG	3 cut(s)	367, 815, 1189
MspCI	CTTAAG	1 cut(s)	598
MspI	CCGG	6 cut(s)	540, 1262, 1410, 1839, 2189, 2576
MspR9I	CCNGG	5 cut(s)	422, 1045, 1262, 1840, 2210
MunI	CAATTG	1 cut(s)	932
Mva1269I	GAATGC	1 cut(s)	2551
MvaI	CCWGG	3 cut(s)	422, 1045, 2210
MvnI	CGCG	1 cut(s)	2516
MwoI	GCNNNNNNNGC	4 cut(s)	491, 551, 766, 775
NciI	CCSGG	2 cut(s)	1262, 1840
NcoI	CCATGG	2 cut(s)	129, 1424
NdeI	CATATG	1 cut(s)	2133
NlaIV	GGNNCC	3 cut(s)	2206, 2403, 2683
NmuCI	GTSAC	5 cut(s)	333, 1412, 1627, 1834, 2191
NsiI	ATGCAT	1 cut(s)	2551
NspV	TTCGAA	1 cut(s)	157
OliI	CACNNNNGTG	1 cut(s)	2649
PaeR7I	CTCGAG	1 cut(s)	498
PagI	TCATGA	1 cut(s)	145
PceI	AGGCCT	2 cut(s)	26, 2105
PciSI	GCTCTTC	1 cut(s)	933
PcsI	WCGNNNNNNNCGW	2 cut(s)	1486, 1717
PctI	GAATGC	1 cut(s)	2551
PfeI	GAWTC	7 cut(s)	164, 1007, 1040, 1370, 2049, 2242, 2641
PleI	GAGTC	6 cut(s)	25, 308, 340, 1309, 1606, 1634
PpsI	GAGTC	6 cut(s)	25, 308, 340, 1309, 1606, 1634
Ppu21I	YACGTR	1 cut(s)	1851
PsiI	TTATAA	1 cut(s)	2309
Psp6I	CCWGG	3 cut(s)	420, 1043, 2208
PspEI	GGTNACC	2 cut(s)	1101, 1412
PspFI	CCCAGC	1 cut(s)	584
PspGI	CCWGG	3 cut(s)	420, 1043, 2208
PspN4I	GGNNCC	3 cut(s)	2206, 2403, 2683
PspPI	GGNCC	8 cut(s)	389, 418, 851, 965, 1289, 1768, 1858, 2359
PspXI	VCTCGAGB	1 cut(s)	498
PstI	CTGCAG	2 cut(s)	556, 2044
PstNI	CAGNNNCTG	1 cut(s)	1637
PsuI	RGATCY	6 cut(s)	352, 1359, 1996, 2143, 2468, 2491
PvuII	CAGCTG	2 cut(s)	367, 815
RseI	CAYNNNNRTG	5 cut(s)	134, 768, 1506, 1710, 2649
SapI	GCTCTTC	1 cut(s)	933
SaqAI	TTAA	7 cut(s)	192, 395, 599, 882, 1095, 1137, 1388
Sau96I	GGNCC	8 cut(s)	389, 418, 851, 965, 1289, 1768, 1858, 2359
ScaI	AGTACT	1 cut(s)	478
SchI	GAGTC	6 cut(s)	25, 308, 341, 1310, 1606, 1635
ScrFI	CCNGG	5 cut(s)	422, 1045, 1262, 1840, 2210
SduI	GDGCHC	2 cut(s)	1480, 2209
SfaNI	GCATC	6 cut(s)	364, 439, 1246, 1998, 2360, 2428
SfcI	CTRYAG	3 cut(s)	552, 926, 2040
Sfr274I	CTCGAG	1 cut(s)	498
SfuI	TTCGAA	1 cut(s)	157
SinI	GGWCC	4 cut(s)	418, 851, 1768, 1858
SlaI	CTCGAG	1 cut(s)	498
SmiMI	CAYNNNNRTG	5 cut(s)	134, 768, 1506, 1710, 2649
SmlI	CTYRAG	3 cut(s)	498, 598, 1349
SmoI	CTYRAG	3 cut(s)	498, 598, 1349
SpeI	ACTAGT	1 cut(s)	79
SseBI	AGGCCT	2 cut(s)	26, 2105
SsiI	CCGC	2 cut(s)	1189, 2562
SspI	AATATT	2 cut(s)	259, 2295
SspMI	CTAG	4 cut(s)	44, 80, 1677, 1916
StuI	AGGCCT	2 cut(s)	26, 2105
StyD4I	CCNGG	5 cut(s)	420, 1043, 1260, 1838, 2208
StyI	CCWWGG	3 cut(s)	129, 1424, 1764
TaiI	ACGT	6 cut(s)	190, 416, 1137, 1599, 1853, 2668
TaqI	TCGA	2 cut(s)	157, 499
TaqII	GACCGA	1 cut(s)	894
TatI	WGTACW	4 cut(s)	476, 670, 709, 1128
TfiI	GAWTC	7 cut(s)	164, 1007, 1040, 1370, 2049, 2242, 2641
Tru1I	TTAA	7 cut(s)	192, 395, 599, 882, 1095, 1137, 1388
Tru9I	TTAA	7 cut(s)	192, 395, 599, 882, 1095, 1137, 1388
TscAI	CASTG	4 cut(s)	309, 1120, 1545, 1900
TseFI	GTSAC	5 cut(s)	333, 1412, 1627, 1834, 2191
Tsp45I	GTSAC	5 cut(s)	333, 1412, 1627, 1834, 2191
TspGWI	ACGGA	1 cut(s)	2407
TspRI	CASTG	4 cut(s)	309, 1120, 1545, 1900
Vha464I	CTTAAG	1 cut(s)	598
VpaK11BI	GGWCC	4 cut(s)	418, 851, 1768, 1858
XapI	RAATTY	3 cut(s)	614, 1225, 1430
XhoI	CTCGAG	1 cut(s)	498
XmiI	GTMKAC	3 cut(s)	7, 2036, 2608
XspI	CTAG	4 cut(s)	44, 80, 1677, 1916
ZrmI	AGTACT	1 cut(s)	478
Zsp2I	ATGCAT	1 cut(s)	2551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.