pycom05g02130

5-formyltetrahydrofolate cyclo-ligase-like protein COG0212

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
2449519 .. 2452055
2537 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g02130.2

Sequence Viewer

Length: 1140 bp
ATGCCGTTAATGGATTCCTGCCGGCTCCGAAACTCACACCAATTTACATTCGGATCCATATCCATACCCGTACGGGCGATACCCATACTCGACCTCCTCAACCAAACCCAGAAACGCCGTCAATCCCATTCTCTCTCTTCACTCTCTGTCTCCCTCCCAACAAGTTCTCGGAAGCTCCTCTTCGCGCGGAGAAGTAGCAGTAGCAACGGACCCCAAACCGACGTCGCTTTCGACGAGGCAGCTTACGAGGCCGAGCGGCTCAGCCTCGACGCCAAGGCTCGGGAGCAAATGGCCGAGACTTCGAAGATTGAGACCGAGCAAATTGGAGTTGCCGAAGACCCGAAAGCTTGGAAATGGGTTATCCGGAAGAGAATTTGGGACATGATGGAGGCCCGGAACATAGCCCAGAACCCCCGCCCCGTTCACCACCGCATCCCAAACTTCGTCGGCGCTTCTGCGGCTTCCGATAAATTGGGTGGGTTGGAAGTGTTCCGGGTCGGGGATTGCGTGAAGGTAAACCCGGATTCACCACAGAAGCAAGTCAGGTTTCTCACTCTTTCTGGTGGGAAGAAGTTGTTAACTCCTCAACCGCGTTTAAGGACTGGGTTTTTCTCTGTGCTTGAATCTGATTTGTTGAATCCTAGTACCATCAAAGAGGCTTGTACGTCTGTTGGAGCTGCCAAGTATGGGAGGCCAATTGGATTAGATGAGAAAATCAAGGTTGATCTTATTGTCATTGGCTCGGTTGCTGTTGATCCAAGGACAGGTGCTCGACTTGGCAAGGGTGAGGGGTTTGCTGAACTTGAGTACGGGATGCTGCGATTCATGGGAGCCATTGATGACTCAACACCAGTTGTGACAACTGTGCACGACAGTCAATTGGTAGATGATATTCCGATTGAAAAGCTATTAATCCACGATGTACCTGTTGACATCATCTGCACTCCAACGCAGGTCATTTTTACCAACACATCAATTCCAAAGCCTCAAGGGATTTACTGGGACAAATTGTCTCCTGAGAAGCTGGGGCAAATTAGAATACTTAGAGAGCTCAAGAGAAGGATCGAACGGGAGACTGGACAAAAGCTTCCGTGTGGCCCATCTGAGAAGCTGCCTCCCACAGCTCGACGAGGGAGATAA

Protein Analysis

380

Amino Acids

42.08

Weight (kDa)

9.46

Isoelectric Point (pI)

42.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 225
Acc36I ACCTGC 1 cut(s) 943
AccBSI CCGCTC 1 cut(s) 256
AccII CGCG 3 cut(s) 185, 187, 592
AccIII TCCGGA 1 cut(s) 363
AciI CCGC 6 cut(s) 187, 256, 415, 430, 458, 590
AclWI GGATC 4 cut(s) 48, 61, 749, 1070
AcoI YGGCCR 1 cut(s) 291
AcsI RAATTY 1 cut(s) 372
AcyI GRCGYC 2 cut(s) 222, 270
AfaI GTAC 5 cut(s) 72, 646, 664, 809, 924
AfiI CCNNNNNNNGG 4 cut(s) 279, 499, 687, 764
AgsI TTSAA 3 cut(s) 623, 637, 902
AhdI GACNNNNNGTC 1 cut(s) 1009
Alw21I GWGCWC 3 cut(s) 772, 870, 1053
Alw26I GTCTC 5 cut(s) 154, 290, 305, 1017, 1067
Alw44I GTGCAC 1 cut(s) 866
AlwI GGATC 4 cut(s) 48, 61, 749, 1070
Ama87I CYCGRG 1 cut(s) 279
Aor13HI TCCGGA 1 cut(s) 363
AoxI GGCC 5 cut(s) 249, 291, 390, 692, 1096
ApaLI GTGCAC 1 cut(s) 866
ApeKI GCWGC 4 cut(s) 239, 677, 817, 1111
ApoI RAATTY 1 cut(s) 372
ArsI GACNNNNNNTTYG 2 cut(s) 212, 244
AseI ATTAAT 1 cut(s) 911
AspLEI GCGC 2 cut(s) 187, 452
AspS9I GGNCC 3 cut(s) 209, 391, 1097
AsuC2I CCSGG 3 cut(s) 394, 494, 521
AsuHPI GGTGA 3 cut(s) 416, 519, 797
AsuII TTCGAA 1 cut(s) 302
AvaI CYCGRG 1 cut(s) 279
AvaII GGWCC 1 cut(s) 209
BaeGI GKGCMC 1 cut(s) 870
BamHI GGATCC 1 cut(s) 53
BanII GRGCYC 1 cut(s) 1053
BbsI GAAGAC 1 cut(s) 342
Bbv12I GWGCWC 3 cut(s) 772, 870, 1053
BbvI GCAGC 4 cut(s) 251, 664, 804, 1098
BccI CCATC 3 cut(s) 379, 656, 1108
BceAI ACGGC 1 cut(s) 102
BcnI CCSGG 3 cut(s) 394, 494, 521
BcoDI GTCTC 5 cut(s) 154, 290, 305, 1017, 1067
BfaI CTAG 1 cut(s) 642
BfoI RGCGCY 1 cut(s) 453
BfuAI ACCTGC 1 cut(s) 943
BisI GCNGC 6 cut(s) 240, 257, 459, 678, 818, 1112
BlpI GCTNAGC 1 cut(s) 260
BlsI GCNGC 6 cut(s) 241, 258, 460, 679, 819, 1113
Bme1390I CCNGG 3 cut(s) 394, 494, 521
Bme18I GGWCC 1 cut(s) 209
BmeRI GACNNNNNGTC 1 cut(s) 1009
BmeT110I CYCGRG 1 cut(s) 279
BmgT120I GGNCC 3 cut(s) 209, 391, 1097
BmiI GGNNCC 4 cut(s) 26, 55, 211, 832
BmrFI CCNGG 3 cut(s) 394, 494, 521
BmrI ACTGGG 2 cut(s) 612, 1009
BmsI GCATC 2 cut(s) 441, 804
BmuI ACTGGG 2 cut(s) 612, 1009
BpiI GAAGAC 1 cut(s) 342
Bpu1102I GCTNAGC 1 cut(s) 260
Bpu14I TTCGAA 1 cut(s) 302
BpuEI CTTGAG 3 cut(s) 824, 972, 1037
BpuMI CCSGG 3 cut(s) 394, 494, 521
BsaBI GATNNNNATC 1 cut(s) 58
BsaHI GRCGYC 2 cut(s) 222, 270
BsaI GGTCTC 1 cut(s) 305
BsaJI CCNNGG 2 cut(s) 273, 758
BsaWI WCCGGW 1 cut(s) 363
BsaXI ACNNNNNCTCC 2 cut(s) 78, 108
Bsc4I CCNNNNNNNGG 4 cut(s) 279, 499, 687, 764
Bse118I RCCGGY 1 cut(s) 21
Bse1I ACTGG 4 cut(s) 607, 851, 1004, 1081
Bse8I GATNNNNATC 1 cut(s) 58
BseAI TCCGGA 1 cut(s) 363
BseDI CCNNGG 2 cut(s) 273, 758
BseGI GGATG 2 cut(s) 432, 819
BseJI GATNNNNATC 1 cut(s) 58
BseLI CCNNNNNNNGG 4 cut(s) 279, 499, 687, 764
BseMII CTCAG 3 cut(s) 274, 1008, 1095
BseNI ACTGG 4 cut(s) 607, 851, 1004, 1081
BseRI GAGGAG 3 cut(s) 86, 167, 573
BseSI GKGCMC 1 cut(s) 870
BseXI GCAGC 4 cut(s) 251, 664, 804, 1098
BseYI CCCAGC 1 cut(s) 1024
BsgI GTGCAG 1 cut(s) 925
Bsh1236I CGCG 3 cut(s) 185, 187, 592
BshFI GGCC 5 cut(s) 251, 293, 392, 694, 1098
BsiHKAI GWGCWC 3 cut(s) 772, 870, 1053
BsiHKCI CYCGRG 1 cut(s) 279
BsiSI CCGG 5 cut(s) 22, 364, 394, 493, 521
BsiWI CGTACG 1 cut(s) 70
BslFI GGGAC 2 cut(s) 392, 1016
BslI CCNNNNNNNGG 4 cut(s) 279, 499, 687, 764
BsmAI GTCTC 5 cut(s) 154, 290, 305, 1017, 1067
BsmFI GGGAC 2 cut(s) 392, 1016
BsnI GGCC 5 cut(s) 251, 293, 392, 694, 1098
Bso31I GGTCTC 1 cut(s) 305
BsoBI CYCGRG 1 cut(s) 279
Bsp119I TTCGAA 1 cut(s) 302
Bsp1286I GDGCHC 3 cut(s) 772, 870, 1053
Bsp13I TCCGGA 1 cut(s) 363
Bsp143I GATC 4 cut(s) 53, 724, 754, 1062
Bsp1720I GCTNAGC 1 cut(s) 260
BspACI CCGC 6 cut(s) 187, 256, 415, 430, 458, 590
BspANI GGCC 5 cut(s) 251, 293, 392, 694, 1098
BspCNI CTCAG 3 cut(s) 273, 1009, 1096
BspEI TCCGGA 1 cut(s) 363
BspFNI CGCG 3 cut(s) 185, 187, 592
BspLI GGNNCC 4 cut(s) 26, 55, 211, 832
BspMI ACCTGC 1 cut(s) 943
BspPI GGATC 4 cut(s) 48, 61, 749, 1070
BspT104I TTCGAA 1 cut(s) 302
BspTNI GGTCTC 1 cut(s) 305
BsrBI CCGCTC 1 cut(s) 256
BsrFI RCCGGY 1 cut(s) 21
BsrI ACTGG 4 cut(s) 607, 851, 1004, 1081
BssAI RCCGGY 1 cut(s) 21
BssECI CCNNGG 2 cut(s) 273, 758
BssMI GATC 4 cut(s) 53, 724, 754, 1062
BssNI GRCGYC 2 cut(s) 222, 270
BssT1I CCWWGG 2 cut(s) 273, 758
Bst4CI ACNGT 2 cut(s) 865, 875
Bst6I CTCTTC 3 cut(s) 142, 185, 362
BstACI GRCGYC 2 cut(s) 222, 270
BstBI TTCGAA 1 cut(s) 302
BstC8I GCNNGC 1 cut(s) 23
BstDEI CTNAG 4 cut(s) 260, 1017, 1043, 1104
BstF5I GGATG 2 cut(s) 432, 819
BstFNI CGCG 3 cut(s) 185, 187, 592
BstH2I RGCGCY 1 cut(s) 453
BstHHI GCGC 2 cut(s) 187, 452
BstKTI GATC 4 cut(s) 56, 727, 757, 1065
BstMAI GTCTC 5 cut(s) 154, 290, 305, 1017, 1067
BstMBI GATC 4 cut(s) 53, 724, 754, 1062
BstMWI GCNNNNNNNGC 2 cut(s) 248, 458
BstSCI CCNGG 3 cut(s) 392, 492, 519
BstSLI GKGCMC 1 cut(s) 870
BstUI CGCG 3 cut(s) 185, 187, 592
BstV1I GCAGC 4 cut(s) 251, 664, 804, 1098
BstV2I GAAGAC 1 cut(s) 342
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
BsuRI GGCC 5 cut(s) 251, 293, 392, 694, 1098
BtsCI GGATG 2 cut(s) 432, 819
BveI ACCTGC 1 cut(s) 943
Cac8I GCNNGC 1 cut(s) 23
CfoI GCGC 2 cut(s) 187, 452
Cfr10I RCCGGY 1 cut(s) 21
Cfr13I GGNCC 3 cut(s) 209, 391, 1097
CseI GACGC 1 cut(s) 278
Csp6I GTAC 5 cut(s) 71, 645, 663, 808, 923
CviAII CATG 2 cut(s) 382, 826
CviQI GTAC 5 cut(s) 71, 645, 663, 808, 923
DdeI CTNAG 4 cut(s) 260, 1017, 1043, 1104
DpnI GATC 4 cut(s) 55, 726, 756, 1064
DpnII GATC 4 cut(s) 53, 724, 754, 1062
DriI GACNNNNNGTC 1 cut(s) 1009
EaeI YGGCCR 1 cut(s) 291
Eam1104I CTCTTC 3 cut(s) 142, 185, 362
Eam1105I GACNNNNNGTC 1 cut(s) 1009
EarI CTCTTC 3 cut(s) 142, 185, 362
Ecl136II GAGCTC 1 cut(s) 1051
Eco130I CCWWGG 2 cut(s) 273, 758
Eco24I GRGCYC 1 cut(s) 1053
Eco31I GGTCTC 1 cut(s) 305
Eco47I GGWCC 1 cut(s) 209
Eco53kI GAGCTC 1 cut(s) 1051
Eco88I CYCGRG 1 cut(s) 279
EcoICRI GAGCTC 1 cut(s) 1051
EcoT14I CCWWGG 2 cut(s) 273, 758
EcoT38I GRGCYC 1 cut(s) 1053
ErhI CCWWGG 2 cut(s) 273, 758
FaeI CATG 2 cut(s) 385, 829
FaiI YATR 7 cut(s) 59, 65, 86, 383, 401, 687, 827
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FaqI GGGAC 2 cut(s) 392, 1016
FatI CATG 2 cut(s) 381, 825
FauI CCCGC 1 cut(s) 422
Fnu4HI GCNGC 6 cut(s) 240, 257, 459, 678, 818, 1112
FokI GGATG 2 cut(s) 419, 826
FriOI GRGCYC 1 cut(s) 1053
Fsp4HI GCNGC 6 cut(s) 240, 257, 459, 678, 818, 1112
FspBI CTAG 1 cut(s) 642
GlaI GCGC 2 cut(s) 186, 451
GluI GCNGC 6 cut(s) 240, 257, 459, 678, 818, 1112
GsaI CCCAGC 1 cut(s) 1028
HaeII RGCGCY 1 cut(s) 453
HaeIII GGCC 5 cut(s) 251, 293, 392, 694, 1098
HapII CCGG 5 cut(s) 22, 364, 394, 493, 521
HgaI GACGC 1 cut(s) 278
HhaI GCGC 2 cut(s) 187, 452
Hin1I GRCGYC 2 cut(s) 222, 270
Hin1II CATG 2 cut(s) 385, 829
Hin6I GCGC 2 cut(s) 185, 450
HinP1I GCGC 2 cut(s) 185, 450
HincII GTYRAC 2 cut(s) 579, 931
HindII GTYRAC 2 cut(s) 579, 931
HindIII AAGCTT 2 cut(s) 345, 1085
HinfI GANTC 6 cut(s) 14, 524, 623, 637, 822, 842
HpaI GTTAAC 1 cut(s) 579
HpaII CCGG 5 cut(s) 22, 364, 394, 493, 521
HphI GGTGA 3 cut(s) 416, 519, 797
Hpy166II GTNNAC 5 cut(s) 424, 517, 579, 868, 931
Hpy188I TCNGA 7 cut(s) 29, 53, 171, 466, 628, 897, 1105
Hpy188III TCNNGA 4 cut(s) 281, 364, 1016, 1054
Hpy8I GTNNAC 5 cut(s) 424, 517, 579, 868, 931
Hpy99I CGWCG 6 cut(s) 224, 227, 236, 272, 449, 1131
HpyAV CCTTC 2 cut(s) 505, 1053
HpyCH4III ACNGT 2 cut(s) 865, 875
HpyCH4IV ACGT 2 cut(s) 222, 665
HpyCH4V TGCA 2 cut(s) 868, 942
HpyF10VI GCNNNNNNNGC 2 cut(s) 248, 458
HpyF3I CTNAG 4 cut(s) 260, 1017, 1043, 1104
HpySE526I ACGT 2 cut(s) 222, 665
Hsp92I GRCGYC 2 cut(s) 222, 270
Hsp92II CATG 2 cut(s) 385, 829
HspAI GCGC 2 cut(s) 185, 450
Kpn2I TCCGGA 1 cut(s) 363
KroI GCCGGC 1 cut(s) 21
KroNI GCCGGC 1 cut(s) 23
KspAI GTTAAC 1 cut(s) 579
Kzo9I GATC 4 cut(s) 53, 724, 754, 1062
LmnI GCTCC 5 cut(s) 30, 180, 283, 674, 830
Lsp1109I GCAGC 4 cut(s) 251, 664, 804, 1098
LweI GCATC 2 cut(s) 441, 804
MaeI CTAG 1 cut(s) 642
MaeII ACGT 2 cut(s) 222, 665
MaeIII GTNAC 1 cut(s) 856
MalI GATC 4 cut(s) 55, 726, 756, 1064
MbiI CCGCTC 1 cut(s) 256
MboI GATC 4 cut(s) 53, 724, 754, 1062
MboII GAAGA 6 cut(s) 129, 172, 316, 347, 379, 580
MfeI CAATTG 2 cut(s) 696, 878
MflI RGATCY 1 cut(s) 53
MhlI GDGCHC 3 cut(s) 772, 870, 1053
MluCI AATT 9 cut(s) 41, 321, 372, 470, 696, 878, 975, 1007, 1032
MlyI GAGTC 1 cut(s) 836
MmeI TCCRAC 3 cut(s) 462, 652, 971
MroI TCCGGA 1 cut(s) 363
MroNI GCCGGC 1 cut(s) 21
MseI TTAA 4 cut(s) 8, 578, 596, 911
MspI CCGG 5 cut(s) 22, 364, 394, 493, 521
MspR9I CCNGG 3 cut(s) 394, 494, 521
MunI CAATTG 2 cut(s) 696, 878
MvnI CGCG 3 cut(s) 185, 187, 592
MwoI GCNNNNNNNGC 2 cut(s) 248, 458
NaeI GCCGGC 1 cut(s) 23
NciI CCSGG 3 cut(s) 394, 494, 521
NdeII GATC 4 cut(s) 53, 724, 754, 1062
NgoMIV GCCGGC 1 cut(s) 21
NlaIII CATG 2 cut(s) 385, 829
NlaIV GGNNCC 4 cut(s) 26, 55, 211, 832
NmeAIII GCCGAG 2 cut(s) 277, 319
NmuCI GTSAC 1 cut(s) 856
NspV TTCGAA 1 cut(s) 302
PcsI WCGNNNNNNNCGW 3 cut(s) 228, 231, 504
PdiI GCCGGC 1 cut(s) 23
PfeI GAWTC 5 cut(s) 14, 524, 623, 637, 822
Pfl23II CGTACG 1 cut(s) 70
PkrI GCNGC 6 cut(s) 241, 258, 460, 679, 819, 1113
PleI GAGTC 1 cut(s) 836
PpsI GAGTC 1 cut(s) 836
PshBI ATTAAT 1 cut(s) 911
Psp124BI GAGCTC 1 cut(s) 1053
PspFI CCCAGC 1 cut(s) 1024
PspLI CGTACG 1 cut(s) 70
PspN4I GGNNCC 4 cut(s) 26, 55, 211, 832
PspPI GGNCC 3 cut(s) 209, 391, 1097
PsuI RGATCY 1 cut(s) 53
RsaI GTAC 5 cut(s) 72, 646, 664, 809, 924
RsaNI GTAC 5 cut(s) 71, 645, 663, 808, 923
SacI GAGCTC 1 cut(s) 1053
SaqAI TTAA 4 cut(s) 8, 578, 596, 911
SatI GCNGC 6 cut(s) 240, 257, 459, 678, 818, 1112
Sau3AI GATC 4 cut(s) 53, 724, 754, 1062
Sau96I GGNCC 3 cut(s) 209, 391, 1097
SchI GAGTC 1 cut(s) 836
ScrFI CCNGG 3 cut(s) 394, 494, 521
SduI GDGCHC 3 cut(s) 772, 870, 1053
SfaNI GCATC 2 cut(s) 441, 804
SfuI TTCGAA 1 cut(s) 302
SinI GGWCC 1 cut(s) 209
SmlI CTYRAG 3 cut(s) 803, 987, 1052
SmoI CTYRAG 3 cut(s) 803, 987, 1052
Sse9I AATT 9 cut(s) 41, 321, 372, 470, 696, 878, 975, 1007, 1032
SsiI CCGC 6 cut(s) 187, 256, 415, 430, 458, 590
SspMI CTAG 1 cut(s) 642
SstI GAGCTC 1 cut(s) 1053
StyD4I CCNGG 3 cut(s) 392, 492, 519
StyI CCWWGG 2 cut(s) 273, 758
TaaI ACNGT 2 cut(s) 865, 875
TaiI ACGT 2 cut(s) 225, 668
TaqI TCGA 7 cut(s) 90, 231, 267, 302, 772, 1065, 1126
TaqII GACCGA 1 cut(s) 329
TasI AATT 9 cut(s) 41, 321, 372, 470, 696, 878, 975, 1007, 1032
TauI GCSGC 2 cut(s) 259, 461
TfiI GAWTC 5 cut(s) 14, 524, 623, 637, 822
Tru1I TTAA 4 cut(s) 8, 578, 596, 911
Tru9I TTAA 4 cut(s) 8, 578, 596, 911
TseFI GTSAC 1 cut(s) 856
TseI GCWGC 4 cut(s) 239, 677, 817, 1111
Tsp45I GTSAC 1 cut(s) 856
TspDTI ATGAA 1 cut(s) 814
TspGWI ACGGA 2 cut(s) 222, 1080
VneI GTGCAC 1 cut(s) 866
VpaK11BI GGWCC 1 cut(s) 209
VspI ATTAAT 1 cut(s) 911
XapI RAATTY 1 cut(s) 372
XspI CTAG 1 cut(s) 642
ZraI GACGTC 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.