Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8484959.1

Orthogroup ID

OG0009639

Physical Location & Seq

Genomic Coordinates Reverse (-)

35 .. 1806

Gene Structure 1772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8484959.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atgttgactcctagtactatgaaagaggcttgcacctctgttggggtggccaaacacgggcggcctattggattagatgagaaaatcaaggttgatcttattgtcattggctctgttgctgttgatcccaggacaggtgctcgacttggcaagggtgagggatttgcagagcttgaatatgggatgctgcgatacatgggagccattgatgattcaacaccagttgtcactactgtgcatgacagtcaattagtagatgatattccaattgagaagctgttagtccatgatgtaccagttgacatcatatgcactccaacccaggtcatttttaccaacacatcaattccaaagcctcaaggttggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006403 GO:0008150 GO:0008298 GO:0009507 GO:0009536 GO:0033036 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051641 GO:0070727

KEGG Pathways

Metabolic & Signaling

ko00670 ko01100 map00670 map01100

Pfam Domains

Protein Families

5-FTHF_cyc-lig

Protein Analysis

122

Amino Acids

13.13

Weight (kDa)

5.01

Isoelectric Point (pI)

21.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76730
fragaria_vesca	FvH4_2g13270 FvH4_2g13270 FvH4_2g13270 FvH4_2g13270 FvH4_2g13270 FvH4_2g13270
malus_domestica	MD05G1030000.v1.1
prunus_persica	Prupe.8G036900_v2.0.a1
pyrus_communis	pycom05g02130
rosa_chinensis	RchiOBHm_Chr6g0274681
rosa_laevigata	RLG00000013530
rosa_multiflora	Rmu_co8484959.1_g000001 Rmu_sc0004679.1_g000004 Rmu_sc0006223.1_g000029
rosa_roxburghii	Rroxscaffold_7G00194070
rosa_rugosa	Rorug06G0082800
rosa_samantha	Rh6AG199000 Rh6BG202600 Rh6CG203000 Rh6DG194700
rosa_wichuraiana	Rw6G017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	1 cut(s)	119
AcoI	YGGCCR	1 cut(s)	48
AfaI	GTAC	2 cut(s)	16, 294
AfiI	CCNNNNNNNGG	3 cut(s)	42, 57, 134
AgsI	TTSAA	2 cut(s)	176, 216
AjnI	CCWGG	2 cut(s)	128, 321
AleI	CACNNNNGTG	1 cut(s)	233
AluBI	AGCT	2 cut(s)	172, 277
AluI	AGCT	2 cut(s)	172, 277
Alw21I	GWGCWC	1 cut(s)	142
AlwI	GGATC	1 cut(s)	119
AoxI	GGCC	2 cut(s)	48, 62
ApeKI	GCWGC	1 cut(s)	187
AsuHPI	GGTGA	1 cut(s)	167
BalI	TGGCCA	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	174
BciT130I	CCWGG	2 cut(s)	130, 323
BfaI	CTAG	1 cut(s)	12
BisI	GCNGC	2 cut(s)	62, 188
BlsI	GCNGC	2 cut(s)	63, 189
BmcAI	AGTACT	1 cut(s)	16
Bme1390I	CCNGG	2 cut(s)	130, 323
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	2 cut(s)	130, 323
BmsI	GCATC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	342
BsaJI	CCNNGG	2 cut(s)	128, 321
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 57, 134
Bse1I	ACTGG	2 cut(s)	221, 296
BseBI	CCWGG	2 cut(s)	130, 323
BseDI	CCNNGG	2 cut(s)	128, 321
BseGI	GGATG	1 cut(s)	189
BseLI	CCNNNNNNNGG	3 cut(s)	42, 57, 134
BseNI	ACTGG	2 cut(s)	221, 296
BseXI	GCAGC	1 cut(s)	174
BshFI	GGCC	2 cut(s)	50, 64
BsiHKAI	GWGCWC	1 cut(s)	142
BslI	CCNNNNNNNGG	3 cut(s)	42, 57, 134
BsnI	GGCC	2 cut(s)	50, 64
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	2 cut(s)	94, 124
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	2 cut(s)	50, 64
BspLI	GGNNCC	1 cut(s)	202
BspPI	GGATC	1 cut(s)	119
BsrI	ACTGG	2 cut(s)	221, 296
BssECI	CCNNGG	2 cut(s)	128, 321
BssMI	GATC	2 cut(s)	94, 124
Bst2UI	CCWGG	2 cut(s)	130, 323
Bst4CI	ACNGT	2 cut(s)	235, 245
BstC8I	GCNNGC	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	189
BstKTI	GATC	2 cut(s)	97, 127
BstMBI	GATC	2 cut(s)	94, 124
BstNI	CCWGG	2 cut(s)	130, 323
BstSCI	CCNGG	2 cut(s)	128, 321
BstV1I	GCAGC	1 cut(s)	174
BsuRI	GGCC	2 cut(s)	50, 64
BtsCI	GGATG	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	31
Csp6I	GTAC	2 cut(s)	15, 293
CviAII	CATG	3 cut(s)	196, 239, 287
CviJI	RGCY	8 cut(s)	29, 50, 64, 111, 172, 203, 277, 355
CviKI_1	RGCY	8 cut(s)	29, 50, 64, 111, 172, 203, 277, 355
CviQI	GTAC	2 cut(s)	15, 293
DpnI	GATC	2 cut(s)	96, 126
DpnII	GATC	2 cut(s)	94, 124
EaeI	YGGCCR	1 cut(s)	48
EcoRII	CCWGG	2 cut(s)	128, 321
FaeI	CATG	3 cut(s)	199, 242, 290
FaiI	YATR	7 cut(s)	20, 180, 197, 240, 288, 308, 310
FatI	CATG	3 cut(s)	195, 238, 286
FauNDI	CATATG	1 cut(s)	308
Fnu4HI	GCNGC	2 cut(s)	62, 188
FokI	GGATG	1 cut(s)	196
Fsp4HI	GCNGC	2 cut(s)	62, 188
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	2 cut(s)	62, 188
HaeIII	GGCC	2 cut(s)	50, 64
Hin1II	CATG	3 cut(s)	199, 242, 290
HincII	GTYRAC	2 cut(s)	6, 301
HindII	GTYRAC	2 cut(s)	6, 301
HinfI	GANTC	2 cut(s)	7, 212
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	2 cut(s)	6, 301
Hpy8I	GTNNAC	2 cut(s)	6, 301
HpyCH4III	ACNGT	2 cut(s)	235, 245
HpyCH4V	TGCA	4 cut(s)	33, 167, 238, 312
Hsp92II	CATG	3 cut(s)	199, 242, 290
Kzo9I	GATC	2 cut(s)	94, 124
LmnI	GCTCC	1 cut(s)	200
LpnPI	CCDG	7 cut(s)	115, 120, 142, 234, 308, 309, 335
Lsp1109I	GCAGC	1 cut(s)	174
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	1 cut(s)	12
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	2 cut(s)	96, 126
MboI	GATC	2 cut(s)	94, 124
MfeI	CAATTG	1 cut(s)	267
MhlI	GDGCHC	1 cut(s)	142
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	3 cut(s)	248, 267, 345
MluNI	TGGCCA	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	341
MnlI	CCTC	4 cut(s)	19, 46, 151, 366
Mox20I	TGGCCA	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	50
MslI	CAYNNNNRTG	1 cut(s)	233
Msp20I	TGGCCA	1 cut(s)	50
MspR9I	CCNGG	2 cut(s)	130, 323
MunI	CAATTG	1 cut(s)	267
MvaI	CCWGG	2 cut(s)	130, 323
NdeI	CATATG	1 cut(s)	308
NdeII	GATC	2 cut(s)	94, 124
NlaIII	CATG	3 cut(s)	199, 242, 290
NlaIV	GGNNCC	1 cut(s)	202
NmuCI	GTSAC	1 cut(s)	226
OliI	CACNNNNGTG	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	212
PkrI	GCNGC	2 cut(s)	63, 189
Psp6I	CCWGG	2 cut(s)	128, 321
PspGI	CCWGG	2 cut(s)	128, 321
PspN4I	GGNNCC	1 cut(s)	202
RsaI	GTAC	2 cut(s)	16, 294
RsaNI	GTAC	2 cut(s)	15, 293
RseI	CAYNNNNRTG	1 cut(s)	233
SatI	GCNGC	2 cut(s)	62, 188
Sau3AI	GATC	2 cut(s)	94, 124
ScaI	AGTACT	1 cut(s)	16
ScrFI	CCNGG	2 cut(s)	130, 323
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	7 cut(s)	38, 93, 139, 174, 279, 327, 364
SfaNI	GCATC	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	357
SmoI	CTYRAG	1 cut(s)	357
Sse9I	AATT	3 cut(s)	248, 267, 345
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	2 cut(s)	128, 321
TaaI	ACNGT	2 cut(s)	235, 245
TaqI	TCGA	1 cut(s)	142
TasI	AATT	3 cut(s)	248, 267, 345
TatI	WGTACW	1 cut(s)	14
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	1 cut(s)	212
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	1 cut(s)	187
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	35
XspI	CTAG	1 cut(s)	12
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.