Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0009639

Physical Location & Seq

Genomic Coordinates Reverse (-)

38229516 .. 38232906

Gene Structure 3391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG202600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGATTCAAGACGTCTGCTCCGGAATTCACACCCTTTTACATTTACACTCGCTCCACCCATCACCAAAACCCGCCATTACTCACTCTCTCTTCCCTCCCGCAAACTCTTCTTCATGCTCAAAACTAGCCGAAACGACGTCGGCCCCTTCGACGACGCAGCTTACGAGGCCGAGCGGCGCAGCCTCGACGCCAAGGCTCGGCAAACCATGGCTGAGGAGGCTTCCAATGTTACGGAAGACCCCAAAGCTTGGAAATGGGTGATTCGGAAGAGAATTTGGGACATGATGGAGGCCCGCAACATAGCCCAGAACCCAAGGCCTGTTCACCACCGCATCCCCAACTTCGTCGGCGCCTCCGCTGCTGCCGAAAAATTGGGCGGGTTGGAAGCGTTCCGTGTCGGGAACTGTGTGAAAGTGAACCCGGATTCTCCTCAGAAGCAAGTCAGGTTTCTCACACTCTCTGATGGGAAGAAGCTGTTAACTCCTCAACCCCGTTTACGGACTGGGTTTTTCTCTGTGCTTGAATCTGAAATGTTGACTCCTAGTACTATGAAAGAGGCTTGCACCTCTGTTGGGGTGGCCAAACACGGGCGGCCTATTGGATTAGATGAGAAAATCAAGGTTGATCTTATTGTCATTGGCTCCGTTGCTGTTGATCCCAGGACAGGTGCTCGACTTGGCAAGGGTGAGGGATTTGCAGAGCTTGAATATGGGATGCTGCGATACATGGGAGCCATTGATGATTCAACACCAGTTGTCACTACTGGTAAGTGTGGTTTTTTCGCTAACCCTCAGCTATGTTCAATGTGGTGTCATACATATGCAATAGAGATTCCTGTTTCTTCCTTGGAGCAAGCGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006403 GO:0008150 GO:0008298 GO:0009507 GO:0009536 GO:0033036 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051641 GO:0070727

KEGG Pathways

Metabolic & Signaling

ko00670 ko01100 map00670 map01100

Pfam Domains

Protein Families

5-FTHF_cyc-lig

Protein Analysis

287

Amino Acids

31.91

Weight (kDa)

9.38

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
5-FTHF_cyc-lig	PF01812	85 - 262	8.9e-28	5-formyltetrahydrofolate cyclo-ligase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76730
fragaria_vesca	FvH4_2g13270 FvH4_2g13270 FvH4_2g13270 FvH4_2g13270 FvH4_2g13270 FvH4_2g13270
malus_domestica	MD05G1030000.v1.1
prunus_persica	Prupe.8G036900_v2.0.a1
pyrus_communis	pycom05g02130
rosa_chinensis	RchiOBHm_Chr6g0274681
rosa_laevigata	RLG00000013530
rosa_multiflora	Rmu_co8484959.1_g000001 Rmu_sc0004679.1_g000004 Rmu_sc0006223.1_g000029
rosa_roxburghii	Rroxscaffold_7G00194070
rosa_rugosa	Rorug06G0082800
rosa_samantha	Rh6AG199000 Rh6BG202600 Rh6CG203000 Rh6DG194700
rosa_wichuraiana	Rw6G017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	16, 141
AccB1I	GGYRCC	1 cut(s)	350
AccB7I	CCANNNNNTGG	1 cut(s)	249
AccBSI	CCGCTC	1 cut(s)	175
AccIII	TCCGGA	1 cut(s)	21
AciI	CCGC	9 cut(s)	73, 100, 175, 295, 331, 357, 378, 592, 857
AclWI	GGATC	1 cut(s)	650
AcoI	YGGCCR	1 cut(s)	579
AcsI	RAATTY	2 cut(s)	25, 273
AcyI	GRCGYC	4 cut(s)	13, 138, 189, 351
AfaI	GTAC	1 cut(s)	547
AfiI	CCNNNNNNNGG	6 cut(s)	198, 249, 498, 573, 588, 665
AgsI	TTSAA	5 cut(s)	9, 524, 707, 747, 804
AjnI	CCWGG	1 cut(s)	659
AluBI	AGCT	5 cut(s)	161, 248, 475, 703, 796
AluI	AGCT	5 cut(s)	161, 248, 475, 703, 796
Alw21I	GWGCWC	1 cut(s)	673
AlwI	GGATC	1 cut(s)	650
Aor13HI	TCCGGA	1 cut(s)	21
AoxI	GGCC	6 cut(s)	142, 168, 291, 317, 579, 593
ApeKI	GCWGC	5 cut(s)	158, 180, 359, 362, 718
ApoI	RAATTY	2 cut(s)	25, 273
AspLEI	GCGC	2 cut(s)	180, 353
AspS9I	GGNCC	2 cut(s)	143, 292
AsuC2I	CCSGG	1 cut(s)	422
AsuHPI	GGTGA	4 cut(s)	55, 271, 317, 698
BalI	TGGCCA	1 cut(s)	581
BanI	GGYRCC	1 cut(s)	350
BbsI	GAAGAC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	673
BbvCI	CCTCAGC	2 cut(s)	213, 792
BbvI	GCAGC	5 cut(s)	170, 192, 346, 349, 705
BccI	CCATC	3 cut(s)	68, 280, 458
BciT130I	CCWGG	1 cut(s)	661
BcnI	CCSGG	1 cut(s)	422
BfaI	CTAG	2 cut(s)	126, 543
BfoI	RGCGCY	1 cut(s)	354
BisI	GCNGC	8 cut(s)	159, 176, 181, 360, 363, 593, 719, 858
BlsI	GCNGC	8 cut(s)	160, 177, 182, 361, 364, 594, 720, 859
BmcAI	AGTACT	1 cut(s)	547
Bme1390I	CCNGG	2 cut(s)	422, 661
BmgT120I	GGNCC	2 cut(s)	143, 292
BmiI	GGNNCC	4 cut(s)	145, 352, 643, 733
BmrFI	CCNGG	2 cut(s)	422, 661
BmrI	ACTGGG	1 cut(s)	513
BmsI	GCATC	2 cut(s)	342, 705
BmuI	ACTGGG	1 cut(s)	513
BpiI	GAAGAC	1 cut(s)	243
Bpu10I	CCTNAGC	2 cut(s)	213, 792
BpuMI	CCSGG	1 cut(s)	422
BsaHI	GRCGYC	4 cut(s)	13, 138, 189, 351
BsaJI	CCNNGG	5 cut(s)	192, 207, 314, 659, 846
BsaWI	WCCGGW	1 cut(s)	21
BsaXI	ACNNNNNCTCC	3 cut(s)	33, 37, 67
Bsc4I	CCNNNNNNNGG	6 cut(s)	198, 249, 498, 573, 588, 665
Bse1I	ACTGG	3 cut(s)	508, 752, 769
BseAI	TCCGGA	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	661
BseDI	CCNNGG	5 cut(s)	192, 207, 314, 659, 846
BseGI	GGATG	2 cut(s)	333, 720
BseLI	CCNNNNNNNGG	6 cut(s)	198, 249, 498, 573, 588, 665
BseMII	CTCAG	3 cut(s)	204, 446, 806
BseNI	ACTGG	3 cut(s)	508, 752, 769
BseRI	GAGGAG	3 cut(s)	230, 420, 474
BseXI	GCAGC	5 cut(s)	170, 192, 346, 349, 705
BshFI	GGCC	6 cut(s)	144, 170, 293, 319, 581, 595
BshNI	GGYRCC	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	673
BsiSI	CCGG	2 cut(s)	22, 422
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	6 cut(s)	198, 249, 498, 573, 588, 665
BsmFI	GGGAC	1 cut(s)	293
BsnI	GGCC	6 cut(s)	144, 170, 293, 319, 581, 595
Bsp1286I	GDGCHC	1 cut(s)	673
Bsp13I	TCCGGA	1 cut(s)	21
Bsp143I	GATC	2 cut(s)	625, 655
Bsp19I	CCATGG	1 cut(s)	207
BspACI	CCGC	9 cut(s)	73, 100, 175, 295, 331, 357, 378, 592, 857
BspANI	GGCC	6 cut(s)	144, 170, 293, 319, 581, 595
BspCNI	CTCAG	3 cut(s)	205, 445, 805
BspEI	TCCGGA	1 cut(s)	21
BspLI	GGNNCC	4 cut(s)	145, 352, 643, 733
BspPI	GGATC	1 cut(s)	650
BspT107I	GGYRCC	1 cut(s)	350
BsrBI	CCGCTC	1 cut(s)	175
BsrI	ACTGG	3 cut(s)	508, 752, 769
BssECI	CCNNGG	5 cut(s)	192, 207, 314, 659, 846
BssMI	GATC	2 cut(s)	625, 655
BssNI	GRCGYC	4 cut(s)	13, 138, 189, 351
BssT1I	CCWWGG	4 cut(s)	192, 207, 314, 846
Bst2UI	CCWGG	1 cut(s)	661
Bst4CI	ACNGT	1 cut(s)	407
Bst6I	CTCTTC	3 cut(s)	96, 113, 263
BstACI	GRCGYC	4 cut(s)	13, 138, 189, 351
BstC8I	GCNNGC	3 cut(s)	295, 562, 855
BstDEI	CTNAG	3 cut(s)	213, 432, 792
BstDSI	CCRYGG	1 cut(s)	207
BstF5I	GGATG	2 cut(s)	333, 720
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	2 cut(s)	180, 353
BstKTI	GATC	2 cut(s)	628, 658
BstMBI	GATC	2 cut(s)	625, 655
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 218, 359
BstNI	CCWGG	1 cut(s)	661
BstSCI	CCNGG	2 cut(s)	420, 659
BstV1I	GCAGC	5 cut(s)	170, 192, 346, 349, 705
BstV2I	GAAGAC	1 cut(s)	243
BsuRI	GGCC	6 cut(s)	144, 170, 293, 319, 581, 595
BtgI	CCRYGG	1 cut(s)	207
BtsCI	GGATG	2 cut(s)	333, 720
Cac8I	GCNNGC	3 cut(s)	295, 562, 855
CfoI	GCGC	2 cut(s)	180, 353
Cfr13I	GGNCC	2 cut(s)	143, 292
CseI	GACGC	2 cut(s)	164, 197
Csp6I	GTAC	1 cut(s)	546
CviAII	CATG	4 cut(s)	115, 208, 283, 727
CviQI	GTAC	1 cut(s)	546
DdeI	CTNAG	3 cut(s)	213, 432, 792
DinI	GGCGCC	1 cut(s)	352
DpnI	GATC	2 cut(s)	627, 657
DpnII	GATC	2 cut(s)	625, 655
EaeI	YGGCCR	1 cut(s)	579
Eam1104I	CTCTTC	3 cut(s)	96, 113, 263
EarI	CTCTTC	3 cut(s)	96, 113, 263
Eco130I	CCWWGG	4 cut(s)	192, 207, 314, 846
Eco147I	AGGCCT	1 cut(s)	319
EcoRI	GAATTC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	659
EcoT14I	CCWWGG	4 cut(s)	192, 207, 314, 846
EgeI	GGCGCC	1 cut(s)	352
EheI	GGCGCC	1 cut(s)	352
ErhI	CCWWGG	4 cut(s)	192, 207, 314, 846
FaeI	CATG	4 cut(s)	118, 211, 286, 730
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	4 cut(s)	114, 207, 282, 726
FauI	CCCGC	4 cut(s)	80, 107, 302, 371
FauNDI	CATATG	1 cut(s)	820
Fnu4HI	GCNGC	8 cut(s)	159, 176, 181, 360, 363, 593, 719, 858
FokI	GGATG	2 cut(s)	320, 727
Fsp4HI	GCNGC	8 cut(s)	159, 176, 181, 360, 363, 593, 719, 858
FspBI	CTAG	2 cut(s)	126, 543
GlaI	GCGC	2 cut(s)	179, 352
GluI	GCNGC	8 cut(s)	159, 176, 181, 360, 363, 593, 719, 858
HaeII	RGCGCY	1 cut(s)	354
HaeIII	GGCC	6 cut(s)	144, 170, 293, 319, 581, 595
HapII	CCGG	2 cut(s)	22, 422
HgaI	GACGC	2 cut(s)	164, 197
HhaI	GCGC	2 cut(s)	180, 353
Hin1I	GRCGYC	4 cut(s)	13, 138, 189, 351
Hin1II	CATG	4 cut(s)	118, 211, 286, 730
Hin6I	GCGC	2 cut(s)	178, 351
HinP1I	GCGC	2 cut(s)	178, 351
HincII	GTYRAC	2 cut(s)	480, 537
HindII	GTYRAC	2 cut(s)	480, 537
HindIII	AAGCTT	1 cut(s)	246
HinfI	GANTC	7 cut(s)	5, 262, 425, 524, 538, 743, 832
HpaI	GTTAAC	1 cut(s)	480
HpaII	CCGG	2 cut(s)	22, 422
HphI	GGTGA	4 cut(s)	55, 271, 317, 698
Hpy166II	GTNNAC	5 cut(s)	325, 418, 480, 497, 537
Hpy188I	TCNGA	4 cut(s)	267, 435, 463, 529
Hpy188III	TCNNGA	3 cut(s)	9, 22, 400
Hpy8I	GTNNAC	5 cut(s)	325, 418, 480, 497, 537
Hpy99I	CGWCG	6 cut(s)	140, 143, 155, 158, 191, 350
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4IV	ACGT	2 cut(s)	13, 138
HpyCH4V	TGCA	3 cut(s)	564, 698, 824
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 218, 359
HpyF3I	CTNAG	3 cut(s)	213, 432, 792
HpySE526I	ACGT	2 cut(s)	13, 138
Hsp92I	GRCGYC	4 cut(s)	13, 138, 189, 351
Hsp92II	CATG	4 cut(s)	118, 211, 286, 730
HspAI	GCGC	2 cut(s)	178, 351
KasI	GGCGCC	1 cut(s)	350
Kpn2I	TCCGGA	1 cut(s)	21
KspAI	GTTAAC	1 cut(s)	480
Kzo9I	GATC	2 cut(s)	625, 655
LmnI	GCTCC	5 cut(s)	24, 58, 647, 731, 850
Lsp1109I	GCAGC	5 cut(s)	170, 192, 346, 349, 705
LweI	GCATC	2 cut(s)	342, 705
MaeI	CTAG	2 cut(s)	126, 543
MaeII	ACGT	2 cut(s)	13, 138
MaeIII	GTNAC	2 cut(s)	229, 757
MalI	GATC	2 cut(s)	627, 657
MbiI	CCGCTC	1 cut(s)	175
MboI	GATC	2 cut(s)	625, 655
MboII	GAAGA	7 cut(s)	83, 100, 103, 248, 280, 481, 834
MhlI	GDGCHC	1 cut(s)	673
MlsI	TGGCCA	1 cut(s)	581
MluCI	AATT	3 cut(s)	25, 273, 371
MluNI	TGGCCA	1 cut(s)	581
Mly113I	GGCGCC	1 cut(s)	351
MlyI	GAGTC	1 cut(s)	532
MmeI	TCCRAC	1 cut(s)	363
Mox20I	TGGCCA	1 cut(s)	581
MroI	TCCGGA	1 cut(s)	21
MscI	TGGCCA	1 cut(s)	581
MseI	TTAA	1 cut(s)	479
MslI	CAYNNNNRTG	1 cut(s)	819
Msp20I	TGGCCA	1 cut(s)	581
MspA1I	CMGCKG	1 cut(s)	359
MspI	CCGG	2 cut(s)	22, 422
MspR9I	CCNGG	2 cut(s)	422, 661
MvaI	CCWGG	1 cut(s)	661
MwoI	GCNNNNNNNGC	3 cut(s)	167, 218, 359
NarI	GGCGCC	1 cut(s)	351
NciI	CCSGG	1 cut(s)	422
NcoI	CCATGG	1 cut(s)	207
NdeI	CATATG	1 cut(s)	820
NdeII	GATC	2 cut(s)	625, 655
NlaIII	CATG	4 cut(s)	118, 211, 286, 730
NlaIV	GGNNCC	4 cut(s)	145, 352, 643, 733
NmeAIII	GCCGAG	2 cut(s)	178, 196
NmuCI	GTSAC	1 cut(s)	757
PceI	AGGCCT	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 162
PfeI	GAWTC	6 cut(s)	5, 262, 425, 524, 743, 832
PflMI	CCANNNNNTGG	1 cut(s)	249
PkrI	GCNGC	8 cut(s)	160, 177, 182, 361, 364, 594, 720, 859
PleI	GAGTC	1 cut(s)	532
PluTI	GGCGCC	1 cut(s)	354
PpsI	GAGTC	1 cut(s)	532
Psp6I	CCWGG	1 cut(s)	659
PspGI	CCWGG	1 cut(s)	659
PspN4I	GGNNCC	4 cut(s)	145, 352, 643, 733
PspPI	GGNCC	2 cut(s)	143, 292
RsaI	GTAC	1 cut(s)	547
RsaNI	GTAC	1 cut(s)	546
RseI	CAYNNNNRTG	1 cut(s)	819
SaqAI	TTAA	1 cut(s)	479
SatI	GCNGC	8 cut(s)	159, 176, 181, 360, 363, 593, 719, 858
Sau3AI	GATC	2 cut(s)	625, 655
Sau96I	GGNCC	2 cut(s)	143, 292
ScaI	AGTACT	1 cut(s)	547
SchI	GAGTC	1 cut(s)	532
ScrFI	CCNGG	2 cut(s)	422, 661
SduI	GDGCHC	1 cut(s)	673
SfaNI	GCATC	2 cut(s)	342, 705
SfoI	GGCGCC	1 cut(s)	352
SmiMI	CAYNNNNRTG	1 cut(s)	819
Sse9I	AATT	3 cut(s)	25, 273, 371
SseBI	AGGCCT	1 cut(s)	319
SsiI	CCGC	9 cut(s)	73, 100, 175, 295, 331, 357, 378, 592, 857
SspDI	GGCGCC	1 cut(s)	350
SspMI	CTAG	2 cut(s)	126, 543
StuI	AGGCCT	1 cut(s)	319
StyD4I	CCNGG	2 cut(s)	420, 659
StyI	CCWWGG	4 cut(s)	192, 207, 314, 846
TaaI	ACNGT	1 cut(s)	407
TaiI	ACGT	2 cut(s)	16, 141
TaqI	TCGA	3 cut(s)	150, 186, 673
TasI	AATT	3 cut(s)	25, 273, 371
TatI	WGTACW	1 cut(s)	545
TauI	GCSGC	3 cut(s)	178, 595, 860
TfiI	GAWTC	6 cut(s)	5, 262, 425, 524, 743, 832
Tru1I	TTAA	1 cut(s)	479
Tru9I	TTAA	1 cut(s)	479
TseFI	GTSAC	1 cut(s)	757
TseI	GCWGC	5 cut(s)	158, 180, 359, 362, 718
Tsp45I	GTSAC	1 cut(s)	757
TspDTI	ATGAA	2 cut(s)	103, 566
TspGWI	ACGGA	4 cut(s)	248, 383, 514, 634
Van91I	CCANNNNNTGG	1 cut(s)	249
XapI	RAATTY	2 cut(s)	25, 273
XspI	CTAG	2 cut(s)	126, 543
ZraI	GACGTC	2 cut(s)	14, 139
ZrmI	AGTACT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.