Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004703

Physical Location & Seq

Genomic Coordinates Forward (+)

9401270 .. 9402581

Gene Structure 1312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g06720.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGCTTGATTCCCTTGAAAACGCCAAGAGACTGAATACGTGGTACCAAAGTGATCGTGCATTTCAAGTGTCAAATGAAGAAGAAATGGATGAAGTGCATAAGCAGGTTGAGACTGAAACTGCAGAGGTGATTGTCTGTATGCAGGAAGAACTTGGCATGCTTCAGCAGCAAGTTCAAAATGGCCATTTAAAAGAATTGGAGATGAACAAAAATGTAATTATCTTGGAAACGGAACTGAAGGAGGTGCAAGAAAAGTTTTACATGTTGAACGAAGATAATGAACGGTTAAGTAAAGAGCTTGAGGAGAAAGATGGGGAAGTAAGAATGTTGTCACAGGAATGGACATTATTGTCCAGTGAGATTGAAGAGGTTCTGTCTGATGGGTGTGAGGAACTAGATGATGCCTCTGATCAACTTAACCTTATATCCGATTCCTTTCCACGGAAAAGGATTTGGATCTCCGAACAAGTTGGAAGAATCATGCGAATCATCTCTGAAAAGGAATTTTTGATTGATGAACTGAGGAAGTGTTTGGAGGATGCAACCAACAAGAAATGTGATGTGGAGTGCATGCTGAATTCTATGAGAGGAGCAACACTGGCTATAACTGAAGCACATGAACAGGAGTGTTGTGAAAAGGAGAAAGAAATGCTCATGTTGACAACACAGTTGAATGCAAAGTCATCGAGAGTGGAAAAGCTTGAGAATCGAGTGAAGGTACTTGAAGAGCAGATCAGGAAAACGTCAGTCTGTGCAACAGTTGCTTTCGTTGTTGTGGACAGACTAGCAAAGATGAATCTTAGTAATGAAGATGCATTACAGTGTAAGAGTATTCAGCTTAGTGAATCAGAAGACTTGATCTCAACGAAGGTTGCCATTCTCAGTGATCGGGAGTCTGTGATAGCAGAAGCAGAGATAAAAGTTCAGTCTTTAAATGGGGAAGTTGAAGAGTTGAAGAGAACCTGTCCCAATCTAAGACGGGAGCTTTCTGAGGAGCAGGAACATGCATTAACTATAGAACAGACGCTTGAAGATGTCAAAGAGAAAAACATTTTGATGACAATGGAGAAACTAGCTGAGCTAAAAACTGGCTTATCCACATTTATGTCATGCATGAACACAAATGTGGAGCATCATACAAGCTCTGAAGGGAAGGATTCACAAGTAGCTTCTAAGTCTCCAAAGGAGAGGGTGGTGGATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0007049 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0032506 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

402

Amino Acids

46.02

Weight (kDa)

4.65

Isoelectric Point (pI)

53.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19050
fragaria_vesca	FvH4_2g07030 FvH4_2g07030 FvH4_2g07030 FvH4_2g07030 FvH4_2g07030 FvH4_2g07030
malus_domestica	MD00G1050200.v1.1 MD10G1088400.v1.1
prunus_persica	Prupe.8G115500_v2.0.a1
pyrus_communis	pycom05g06710 pycom05g06720 pycom10g07100 pycom10g07120 pycom10g07130
rosa_chinensis	RchiOBHm_Chr6g0259391
rosa_laevigata	RLG00000014535
rosa_multiflora	Rmu_sc0012054.1_g000003 Rmu_sc0023331.1_g000001 Rmu_sc0023332.1_g000001 Rmu_sc0037344.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123360 Rroxscaffold_5G00349410 Rroxscaffold_7G00206650
rosa_rugosa	Rorug05G0588700
rosa_samantha	Rh6AG104100 Rh6AG104200 Rh6BG097400 Rh6CG093500 Rh6DG087300
rosa_wichuraiana	Rw6G009000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	349
Acc36I	ACCTGC	1 cut(s)	94
Acc65I	GGTACC	1 cut(s)	42
AccB1I	GGYRCC	1 cut(s)	42
AclWI	GGATC	1 cut(s)	464
AcoI	YGGCCR	1 cut(s)	181
AcsI	RAATTY	2 cut(s)	503, 577
AcuI	CTGAAG	4 cut(s)	146, 257, 630, 1167
AfaI	GTAC	2 cut(s)	44, 720
AfiI	CCNNNNNNNGG	1 cut(s)	441
AflIII	ACRYGT	1 cut(s)	261
AleI	CACNNNNGTG	1 cut(s)	1124
AluBI	AGCT	8 cut(s)	298, 700, 838, 985, 1076, 1081, 1143, 1169
AluI	AGCT	8 cut(s)	298, 700, 838, 985, 1076, 1081, 1143, 1169
Alw26I	GTCTC	3 cut(s)	22, 104, 1182
AlwI	GGATC	1 cut(s)	464
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	1 cut(s)	166
ApoI	RAATTY	2 cut(s)	503, 577
Asp700I	GAANNNNTTC	1 cut(s)	369
Asp718I	GGTACC	1 cut(s)	42
AsuHPI	GGTGA	1 cut(s)	139
BaeI	ACNNNNGTAYC	2 cut(s)	34, 67
BalI	TGGCCA	1 cut(s)	183
BanI	GGYRCC	1 cut(s)	42
BarI	GAAGNNNNNNTAC	2 cut(s)	801, 833
BbsI	GAAGAC	1 cut(s)	858
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	3 cut(s)	305, 374, 1193
BcgI	CGANNNNNNTGC	2 cut(s)	666, 700
BclI	TGATCA	1 cut(s)	409
BcoDI	GTCTC	3 cut(s)	22, 104, 1182
BfaI	CTAG	3 cut(s)	395, 785, 1073
BfmI	CTRYAG	2 cut(s)	120, 1014
BfuAI	ACCTGC	1 cut(s)	94
BisI	GCNGC	1 cut(s)	167
BlpI	GCTNAGC	1 cut(s)	1077
BlsI	GCNGC	1 cut(s)	168
BmiI	GGNNCC	1 cut(s)	44
BmsI	GCATC	4 cut(s)	391, 529, 802, 1141
BpiI	GAAGAC	1 cut(s)	858
Bpu1102I	GCTNAGC	1 cut(s)	1077
BpuEI	CTTGAG	2 cut(s)	320, 722
BsaAI	YACGTR	1 cut(s)	39
BsaBI	GATNNNNATC	1 cut(s)	455
BsaJI	CCNNGG	1 cut(s)	440
Bsc4I	CCNNNNNNNGG	1 cut(s)	441
Bse1I	ACTGG	3 cut(s)	354, 603, 1093
Bse8I	GATNNNNATC	1 cut(s)	455
BseDI	CCNNGG	1 cut(s)	440
BseGI	GGATG	3 cut(s)	94, 544, 1204
BseJI	GATNNNNATC	1 cut(s)	455
BseLI	CCNNNNNNNGG	1 cut(s)	441
BseMII	CTCAG	4 cut(s)	512, 895, 981, 1068
BseNI	ACTGG	3 cut(s)	354, 603, 1093
BseRI	GAGGAG	3 cut(s)	317, 603, 1007
BseXI	GCAGC	1 cut(s)	178
BshFI	GGCC	1 cut(s)	183
BshNI	GGYRCC	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	951
BslI	CCNNNNNNNGG	1 cut(s)	441
BsmAI	GTCTC	3 cut(s)	22, 104, 1182
BsmFI	GGGAC	1 cut(s)	951
BsmI	GAATGC	1 cut(s)	679
BsnI	GGCC	1 cut(s)	183
Bsp143I	GATC	6 cut(s)	52, 409, 456, 732, 858, 886
Bsp1720I	GCTNAGC	1 cut(s)	1077
BspANI	GGCC	1 cut(s)	183
BspCNI	CTCAG	4 cut(s)	513, 894, 982, 1069
BspLI	GGNNCC	1 cut(s)	44
BspMAI	CTGCAG	1 cut(s)	124
BspMI	ACCTGC	1 cut(s)	94
BspPI	GGATC	1 cut(s)	464
BspQI	GCTCTTC	1 cut(s)	720
BspT107I	GGYRCC	1 cut(s)	42
BsrI	ACTGG	3 cut(s)	354, 603, 1093
BssECI	CCNNGG	1 cut(s)	440
BssMI	GATC	6 cut(s)	52, 409, 456, 732, 858, 886
Bst4CI	ACNGT	4 cut(s)	285, 669, 760, 822
Bst6I	CTCTTC	4 cut(s)	360, 720, 942, 950
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstBAI	YACGTR	1 cut(s)	39
BstC8I	GCNNGC	2 cut(s)	158, 572
BstDEI	CTNAG	8 cut(s)	521, 800, 839, 881, 974, 990, 1077, 1173
BstDSI	CCRYGG	1 cut(s)	440
BstF5I	GGATG	3 cut(s)	94, 544, 1204
BstKTI	GATC	6 cut(s)	55, 412, 459, 735, 861, 889
BstMAI	GTCTC	3 cut(s)	22, 104, 1182
BstMBI	GATC	6 cut(s)	52, 409, 456, 732, 858, 886
BstMWI	GCNNNNNNNGC	3 cut(s)	166, 599, 761
BstNSI	RCATGY	4 cut(s)	160, 265, 574, 1007
BstSFI	CTRYAG	2 cut(s)	120, 1014
BstV1I	GCAGC	1 cut(s)	178
BstV2I	GAAGAC	1 cut(s)	858
BstX2I	RGATCY	1 cut(s)	456
BstYI	RGATCY	1 cut(s)	456
BsuRI	GGCC	1 cut(s)	183
BtgI	CCRYGG	1 cut(s)	440
BtsCI	GGATG	3 cut(s)	94, 544, 1204
BtsIMutI	CAGTG	4 cut(s)	361, 596, 827, 889
BveI	ACCTGC	1 cut(s)	94
Cac8I	GCNNGC	2 cut(s)	158, 572
CseI	GACGC	1 cut(s)	1033
Csp6I	GTAC	2 cut(s)	43, 719
CviAII	CATG	9 cut(s)	157, 262, 481, 571, 617, 655, 1004, 1110, 1114
CviQI	GTAC	2 cut(s)	43, 719
DdeI	CTNAG	8 cut(s)	521, 800, 839, 881, 974, 990, 1077, 1173
DpnI	GATC	6 cut(s)	54, 411, 458, 734, 860, 888
DpnII	GATC	6 cut(s)	52, 409, 456, 732, 858, 886
DraI	TTTAAA	2 cut(s)	189, 933
DrdI	GACNNNNNNGTC	1 cut(s)	349
DseDI	GACNNNNNNGTC	1 cut(s)	349
EaeI	YGGCCR	1 cut(s)	181
Eam1104I	CTCTTC	4 cut(s)	360, 720, 942, 950
EarI	CTCTTC	4 cut(s)	360, 720, 942, 950
Eco57I	CTGAAG	4 cut(s)	146, 257, 630, 1167
EcoRI	GAATTC	1 cut(s)	577
EcoT22I	ATGCAT	3 cut(s)	817, 1009, 1115
FaeI	CATG	9 cut(s)	160, 265, 484, 574, 620, 658, 1007, 1113, 1117
FaqI	GGGAC	1 cut(s)	951
FatI	CATG	9 cut(s)	156, 261, 480, 570, 616, 654, 1003, 1109, 1113
FbaI	TGATCA	1 cut(s)	409
Fnu4HI	GCNGC	1 cut(s)	167
FokI	GGATG	2 cut(s)	101, 551
Fsp4HI	GCNGC	1 cut(s)	167
FspBI	CTAG	3 cut(s)	395, 785, 1073
GluI	GCNGC	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	183
HgaI	GACGC	1 cut(s)	1033
Hin1II	CATG	9 cut(s)	160, 265, 484, 574, 620, 658, 1007, 1113, 1117
HincII	GTYRAC	1 cut(s)	660
HindII	GTYRAC	1 cut(s)	660
HindIII	AAGCTT	1 cut(s)	698
HinfI	GANTC	9 cut(s)	8, 431, 477, 486, 706, 796, 845, 893, 1157
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	2 cut(s)	660, 778
Hpy188I	TCNGA	8 cut(s)	379, 409, 430, 463, 496, 850, 991, 1147
Hpy188III	TCNNGA	3 cut(s)	687, 736, 890
Hpy8I	GTNNAC	2 cut(s)	660, 778
HpyAV	CCTTC	5 cut(s)	232, 709, 862, 1142, 1147
HpyCH4III	ACNGT	4 cut(s)	285, 669, 760, 822
HpyCH4IV	ACGT	2 cut(s)	38, 743
HpyF10VI	GCNNNNNNNGC	3 cut(s)	166, 599, 761
HpyF3I	CTNAG	8 cut(s)	521, 800, 839, 881, 974, 990, 1077, 1173
HpySE526I	ACGT	2 cut(s)	38, 743
Hsp92II	CATG	9 cut(s)	160, 265, 484, 574, 620, 658, 1007, 1113, 1117
KpnI	GGTACC	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	6 cut(s)	52, 409, 456, 732, 858, 886
LguI	GCTCTTC	1 cut(s)	720
LmnI	GCTCC	4 cut(s)	590, 982, 994, 1129
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	4 cut(s)	391, 529, 802, 1141
MaeI	CTAG	3 cut(s)	395, 785, 1073
MaeII	ACGT	2 cut(s)	38, 743
MaeIII	GTNAC	1 cut(s)	330
MalI	GATC	6 cut(s)	54, 411, 458, 734, 860, 888
MboI	GATC	6 cut(s)	52, 409, 456, 732, 858, 886
MflI	RGATCY	1 cut(s)	456
MlsI	TGGCCA	1 cut(s)	183
MluCI	AATT	4 cut(s)	194, 216, 503, 577
MluNI	TGGCCA	1 cut(s)	183
MlyI	GAGTC	1 cut(s)	902
MmeI	TCCRAC	1 cut(s)	451
Mox20I	TGGCCA	1 cut(s)	183
Mph1103I	ATGCAT	3 cut(s)	817, 1009, 1115
MroXI	GAANNNNTTC	1 cut(s)	369
MscI	TGGCCA	1 cut(s)	183
MseI	TTAA	5 cut(s)	188, 287, 417, 932, 1010
MslI	CAYNNNNRTG	5 cut(s)	337, 820, 1055, 1103, 1124
Msp20I	TGGCCA	1 cut(s)	183
Mva1269I	GAATGC	1 cut(s)	679
MwoI	GCNNNNNNNGC	3 cut(s)	166, 599, 761
NdeII	GATC	6 cut(s)	52, 409, 456, 732, 858, 886
NlaIII	CATG	9 cut(s)	160, 265, 484, 574, 620, 658, 1007, 1113, 1117
NlaIV	GGNNCC	1 cut(s)	44
NmuCI	GTSAC	1 cut(s)	330
NsiI	ATGCAT	3 cut(s)	817, 1009, 1115
NspI	RCATGY	4 cut(s)	160, 265, 574, 1007
OliI	CACNNNNGTG	1 cut(s)	1124
PaeI	GCATGC	2 cut(s)	160, 574
PciI	ACATGT	1 cut(s)	261
PciSI	GCTCTTC	1 cut(s)	720
PctI	GAATGC	1 cut(s)	679
PdmI	GAANNNNTTC	1 cut(s)	369
PfeI	GAWTC	8 cut(s)	8, 431, 477, 486, 706, 796, 845, 1157
PkrI	GCNGC	1 cut(s)	168
PleI	GAGTC	1 cut(s)	901
PpsI	GAGTC	1 cut(s)	901
Ppu21I	YACGTR	1 cut(s)	39
PscI	ACATGT	1 cut(s)	261
PspN4I	GGNNCC	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	456
RsaI	GTAC	2 cut(s)	44, 720
RsaNI	GTAC	2 cut(s)	43, 719
RseI	CAYNNNNRTG	5 cut(s)	337, 820, 1055, 1103, 1124
SapI	GCTCTTC	1 cut(s)	720
SaqAI	TTAA	5 cut(s)	188, 287, 417, 932, 1010
SatI	GCNGC	1 cut(s)	167
Sau3AI	GATC	6 cut(s)	52, 409, 456, 732, 858, 886
SchI	GAGTC	1 cut(s)	902
SfaNI	GCATC	4 cut(s)	391, 529, 802, 1141
SfcI	CTRYAG	2 cut(s)	120, 1014
SmiMI	CAYNNNNRTG	5 cut(s)	337, 820, 1055, 1103, 1124
SmlI	CTYRAG	2 cut(s)	299, 701
SmoI	CTYRAG	2 cut(s)	299, 701
SphI	GCATGC	2 cut(s)	160, 574
Sse9I	AATT	4 cut(s)	194, 216, 503, 577
SspMI	CTAG	3 cut(s)	395, 785, 1073
TaaI	ACNGT	4 cut(s)	285, 669, 760, 822
TaiI	ACGT	2 cut(s)	41, 746
TaqI	TCGA	2 cut(s)	686, 709
TasI	AATT	4 cut(s)	194, 216, 503, 577
TfiI	GAWTC	8 cut(s)	8, 431, 477, 486, 706, 796, 845, 1157
Tru1I	TTAA	5 cut(s)	188, 287, 417, 932, 1010
Tru9I	TTAA	5 cut(s)	188, 287, 417, 932, 1010
TscAI	CASTG	4 cut(s)	361, 603, 827, 889
TseFI	GTSAC	1 cut(s)	330
TseI	GCWGC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	330
TspDTI	ATGAA	9 cut(s)	90, 105, 218, 294, 531, 633, 809, 822, 1130
TspGWI	ACGGA	2 cut(s)	245, 457
TspRI	CASTG	4 cut(s)	361, 603, 827, 889
XapI	RAATTY	2 cut(s)	503, 577
XceI	RCATGY	4 cut(s)	160, 265, 574, 1007
XmnI	GAANNNNTTC	1 cut(s)	369
XspI	CTAG	3 cut(s)	395, 785, 1073
Zsp2I	ATGCAT	3 cut(s)	817, 1009, 1115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.