Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004703

Physical Location & Seq

Genomic Coordinates Forward (+)

78692205 .. 78692429

Gene Structure 225 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0588700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGATGCTCGTCAAGAGGTTGCTGCGCGTGGAAGCCAACGAGTGCAGAAGGAAAAGGATAATACAAAGAAACAGGCAATGAGCAGAAGGATGATGGCAGCGGATGAGAAAGGCGACATTAATGATATGGCTGATGCCTTCATCAAGAAGTTCAGGAACCAGCTAAAGATTCAAAGGGAAGAATCATTCAAAAGGTTTCAGGAAATGATTGCTCGTGGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0007049 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0032506 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

74

Amino Acids

8.69

Weight (kDa)

10.08

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF761	PF05553	38 - 72	1.3e-16	Cotton fibre expressed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19050
fragaria_vesca	FvH4_2g07030 FvH4_2g07030 FvH4_2g07030 FvH4_2g07030 FvH4_2g07030 FvH4_2g07030
malus_domestica	MD00G1050200.v1.1 MD10G1088400.v1.1
prunus_persica	Prupe.8G115500_v2.0.a1
pyrus_communis	pycom05g06710 pycom05g06720 pycom10g07100 pycom10g07120 pycom10g07130
rosa_chinensis	RchiOBHm_Chr6g0259391
rosa_laevigata	RLG00000014535
rosa_multiflora	Rmu_sc0012054.1_g000003 Rmu_sc0023331.1_g000001 Rmu_sc0023332.1_g000001 Rmu_sc0037344.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123360 Rroxscaffold_5G00349410 Rroxscaffold_7G00206650
rosa_rugosa	Rorug05G0588700
rosa_samantha	Rh6AG104100 Rh6AG104200 Rh6BG097400 Rh6CG093500 Rh6DG087300
rosa_wichuraiana	Rw6G009000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	28
AciI	CCGC	1 cut(s)	101
AgsI	TTSAA	2 cut(s)	173, 190
AluBI	AGCT	1 cut(s)	163
AluI	AGCT	1 cut(s)	163
ApeKI	GCWGC	2 cut(s)	23, 98
AseI	ATTAAT	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	28
BauI	CACGAG	1 cut(s)	213
BbvI	GCAGC	2 cut(s)	10, 110
BccI	CCATC	1 cut(s)	88
BisI	GCNGC	2 cut(s)	24, 99
BlsI	GCNGC	2 cut(s)	25, 100
BmiI	GGNNCC	1 cut(s)	158
BmsI	GCATC	1 cut(s)	124
Bse3DI	GCAATG	1 cut(s)	84
BseGI	GGATG	3 cut(s)	10, 96, 109
BseMI	GCAATG	1 cut(s)	84
BseXI	GCAGC	2 cut(s)	10, 110
BsgI	GTGCAG	1 cut(s)	65
Bsh1236I	CGCG	1 cut(s)	28
BspACI	CCGC	1 cut(s)	101
BspFNI	CGCG	1 cut(s)	28
BspLI	GGNNCC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	84
BssSI	CACGAG	1 cut(s)	213
Bst2BI	CACGAG	1 cut(s)	213
BstF5I	GGATG	3 cut(s)	10, 96, 109
BstFNI	CGCG	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	28
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	2 cut(s)	10, 110
BtsCI	GGATG	3 cut(s)	10, 96, 109
CfoI	GCGC	1 cut(s)	28
CviJI	RGCY	3 cut(s)	36, 131, 163
CviKI_1	RGCY	3 cut(s)	36, 131, 163
FaiI	YATR	1 cut(s)	128
Fnu4HI	GCNGC	2 cut(s)	24, 99
FokI	GGATG	3 cut(s)	17, 103, 116
Fsp4HI	GCNGC	2 cut(s)	24, 99
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	2 cut(s)	24, 99
HhaI	GCGC	1 cut(s)	28
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HinfI	GANTC	2 cut(s)	169, 182
Hpy188III	TCNNGA	4 cut(s)	14, 145, 154, 200
HpyAV	CCTTC	3 cut(s)	43, 81, 148
HpyCH4V	TGCA	1 cut(s)	46
HspAI	GCGC	1 cut(s)	26
LpnPI	CCDG	4 cut(s)	59, 139, 173, 185
Lsp1109I	GCAGC	2 cut(s)	10, 110
LweI	GCATC	1 cut(s)	124
MboII	GAAGA	1 cut(s)	191
MnlI	CCTC	1 cut(s)	10
MseI	TTAA	2 cut(s)	120, 223
MspA1I	CMGCKG	1 cut(s)	101
MvnI	CGCG	1 cut(s)	28
NlaIV	GGNNCC	1 cut(s)	158
PfeI	GAWTC	2 cut(s)	169, 182
PkrI	GCNGC	2 cut(s)	25, 100
PshBI	ATTAAT	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	158
SaqAI	TTAA	2 cut(s)	120, 223
SatI	GCNGC	2 cut(s)	24, 99
SetI	ASST	3 cut(s)	21, 165, 197
SfaNI	GCATC	1 cut(s)	124
SsiI	CCGC	1 cut(s)	101
TfiI	GAWTC	2 cut(s)	169, 182
Tru1I	TTAA	2 cut(s)	120, 223
Tru9I	TTAA	2 cut(s)	120, 223
TseI	GCWGC	2 cut(s)	23, 98
TspDTI	ATGAA	1 cut(s)	130
VspI	ATTAAT	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.