Rroxscaffold_7G00206650
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
56405397 .. 56405776
380 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00206650.1

Sequence Viewer

Length: 270 bp
ATGCTTATATCTATAATTGAACAGGAAGAAAATCACATGCTAAAAACTCACAATGAAGAACTTAGCACTAAGCTTCGACGGACAGAGGTTCTTCTATCACGTTGCAAGGAAGAGCTTGCTCGCTATCGTGCTTCCATTGGGAGAAACCCTTATGTTGATTTTGATGAGGAGCAACGACTGAGTAACAAAGTGAAGGAAATTGAGGAGGAGAAGTTGCAGTTAGCACAAAAGTTATTAGCCCTGTGTACTAGTGTTCTAAAGGTATGTTAA

Protein Analysis

89

Amino Acids

10.47

Weight (kDa)

6.14

Isoelectric Point (pI)

66.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 247
AgsI TTSAA 1 cut(s) 20
AhlI ACTAGT 1 cut(s) 248
AluBI AGCT 2 cut(s) 73, 115
AluI AGCT 2 cut(s) 73, 115
BcuI ACTAGT 1 cut(s) 248
BfaI CTAG 1 cut(s) 249
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
BseMII CTCAG 1 cut(s) 170
BseRI GAGGAG 3 cut(s) 182, 218, 221
BspCNI CTCAG 1 cut(s) 171
BspQI GCTCTTC 1 cut(s) 105
Bst6I CTCTTC 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 117, 121
BstDEI CTNAG 3 cut(s) 62, 69, 179
BstNSI RCATGY 1 cut(s) 40
Cac8I GCNNGC 2 cut(s) 117, 121
Csp6I GTAC 1 cut(s) 246
CviAII CATG 1 cut(s) 37
CviJI RGCY 3 cut(s) 73, 115, 239
CviKI_1 RGCY 3 cut(s) 73, 115, 239
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 3 cut(s) 62, 69, 179
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
FaeI CATG 1 cut(s) 40
FaiI YATR 5 cut(s) 8, 14, 38, 153, 265
FatI CATG 1 cut(s) 36
FspBI CTAG 1 cut(s) 249
Hin1II CATG 1 cut(s) 40
HindIII AAGCTT 1 cut(s) 71
Hpy166II GTNNAC 1 cut(s) 246
Hpy8I GTNNAC 1 cut(s) 246
Hpy99I CGWCG 1 cut(s) 81
HpyAV CCTTC 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 2 cut(s) 105, 217
HpyF3I CTNAG 3 cut(s) 62, 69, 179
HpySE526I ACGT 1 cut(s) 100
Hsp92II CATG 1 cut(s) 40
LguI GCTCTTC 1 cut(s) 105
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 2 cut(s) 8, 254
MaeI CTAG 1 cut(s) 249
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 1 cut(s) 182
MboII GAAGA 4 cut(s) 38, 68, 83, 122
MluCI AATT 2 cut(s) 15, 198
MnlI CCTC 4 cut(s) 79, 160, 196, 199
MseI TTAA 1 cut(s) 268
NlaIII CATG 1 cut(s) 40
NspI RCATGY 1 cut(s) 40
PciSI GCTCTTC 1 cut(s) 105
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
SapI GCTCTTC 1 cut(s) 105
SaqAI TTAA 1 cut(s) 268
SetI ASST 5 cut(s) 75, 90, 103, 117, 264
SgeI CNNG 9 cut(s) 35, 49, 111, 118, 128, 132, 140, 253, 261
SpeI ACTAGT 1 cut(s) 248
Sse9I AATT 2 cut(s) 15, 198
SspMI CTAG 1 cut(s) 249
TaiI ACGT 1 cut(s) 103
TaqI TCGA 1 cut(s) 76
TasI AATT 2 cut(s) 15, 198
TatI WGTACW 1 cut(s) 245
Tru1I TTAA 1 cut(s) 268
Tru9I TTAA 1 cut(s) 268
TspDTI ATGAA 1 cut(s) 69
TspGWI ACGGA 1 cut(s) 94
XceI RCATGY 1 cut(s) 40
XspI CTAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.