Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004703

Physical Location & Seq

Genomic Coordinates Forward (+)

22384068 .. 22384912

Gene Structure 845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00349410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGCTCGAGCTCGAAACCAAGCTGGACGGAGAAGAAGACTCGAGATTCGTCACCAAATTCAAGTATAGGACTTCGTCCGCTTCGGATCTCGTTTCTCAATTCGTCTTTCGGGATGATGAGGGATTTCAAATTGTTGCGATCGAATTCGGGAAGAAAAGAAGAGGCGGAGAACGTGCCGGCCAAAGCTTCCGATCCTCGGGTTGCCTCTTCGGACAGGAAAAGCACGGTGCTGCATTTTCGGCTCGGAAAAGGTTCGGGTGGGCTCGCAGGAATGATTCGGGTGATTTTCATGAGGATGGGGGTACTTGTATGACCCAATTGAGCAGAGGAGGTGGTAATAGAAATGGGGGTTTGGCAAATTTGACGCCTCGGATAGCCGGGACGGTTGGGAAAGGTGGTTCAAGTTATTCGGAGAGTAATTCGACGCATACTACGCCAACTAAAAGTGTTTCGAAGCCTCCGAATTCGGGGTTTCGGAATAAGGTGGATGGAAGTGTTGGTGGTCGAGGTGGGAACTTTGCTGCATTGTACAAAGGGATTCCCATTTCGAGTGGACCTTCTACTACCGTGGTGAATTCGGTTGAAGTACCTCACTTTGATCTCAAGGAAGACACATCTTTTTGGATTCTTATACGTGTGCGTCCTCTGAATAGCATGGAGCGAAGTACACATGGTTACAACGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0007049 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0032506 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

229

Amino Acids

24.8

Weight (kDa)

9.65

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19050
fragaria_vesca	FvH4_2g07030 FvH4_2g07030 FvH4_2g07030 FvH4_2g07030 FvH4_2g07030 FvH4_2g07030
malus_domestica	MD00G1050200.v1.1 MD10G1088400.v1.1
prunus_persica	Prupe.8G115500_v2.0.a1
pyrus_communis	pycom05g06710 pycom05g06720 pycom10g07100 pycom10g07120 pycom10g07130
rosa_chinensis	RchiOBHm_Chr6g0259391
rosa_laevigata	RLG00000014535
rosa_multiflora	Rmu_sc0012054.1_g000003 Rmu_sc0023331.1_g000001 Rmu_sc0023332.1_g000001 Rmu_sc0037344.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123360 Rroxscaffold_5G00349410 Rroxscaffold_7G00206650
rosa_rugosa	Rorug05G0588700
rosa_samantha	Rh6AG104100 Rh6AG104200 Rh6BG097400 Rh6CG093500 Rh6DG087300
rosa_wichuraiana	Rw6G009000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	78, 165
AclWI	GGATC	2 cut(s)	93, 186
AcoI	YGGCCR	1 cut(s)	178
AcsI	RAATTY	5 cut(s)	56, 143, 358, 463, 574
AcyI	GRCGYC	1 cut(s)	365
AfaI	GTAC	4 cut(s)	304, 530, 588, 667
AfiI	CCNNNNNNNGG	2 cut(s)	196, 467
AflIII	ACRYGT	1 cut(s)	634
AgsI	TTSAA	4 cut(s)	61, 128, 402, 584
AloI	GAACNNNNNNTCC	2 cut(s)	382, 414
AluBI	AGCT	3 cut(s)	10, 22, 186
AluI	AGCT	3 cut(s)	10, 22, 186
Alw21I	GWGCWC	1 cut(s)	12
AlwI	GGATC	2 cut(s)	93, 186
Ama87I	CYCGRG	3 cut(s)	5, 40, 196
AoxI	GGCC	1 cut(s)	178
ApeKI	GCWGC	2 cut(s)	230, 521
ApoI	RAATTY	5 cut(s)	56, 143, 358, 463, 574
ArsI	GACNNNNNNTTYG	2 cut(s)	29, 61
Asp700I	GAANNNNTTC	1 cut(s)	251
AspS9I	GGNCC	1 cut(s)	554
AsuC2I	CCSGG	1 cut(s)	379
AsuHPI	GGTGA	3 cut(s)	43, 293, 583
AsuII	TTCGAA	1 cut(s)	452
AvaI	CYCGRG	3 cut(s)	5, 40, 196
AvaII	GGWCC	1 cut(s)	554
BanII	GRGCYC	2 cut(s)	12, 265
BbsI	GAAGAC	2 cut(s)	42, 615
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	2 cut(s)	217, 508
BccI	CCATC	2 cut(s)	290, 482
BcnI	CCSGG	1 cut(s)	379
BisI	GCNGC	2 cut(s)	231, 522
BlsI	GCNGC	2 cut(s)	232, 523
Bme1390I	CCNGG	1 cut(s)	379
Bme18I	GGWCC	1 cut(s)	554
BmeT110I	CYCGRG	3 cut(s)	5, 40, 196
BmgT120I	GGNCC	1 cut(s)	554
BmrFI	CCNGG	1 cut(s)	379
BpiI	GAAGAC	2 cut(s)	42, 615
Bpu14I	TTCGAA	1 cut(s)	452
BpuEI	CTTGAG	1 cut(s)	587
BpuMI	CCSGG	1 cut(s)	379
BsaAI	YACGTR	1 cut(s)	635
BsaHI	GRCGYC	1 cut(s)	365
BsaJI	CCNNGG	3 cut(s)	195, 368, 567
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 467
Bse118I	RCCGGY	1 cut(s)	176
BseDI	CCNNGG	3 cut(s)	195, 368, 567
BseGI	GGATG	3 cut(s)	118, 301, 493
BseLI	CCNNNNNNNGG	2 cut(s)	196, 467
BseRI	GAGGAG	1 cut(s)	342
BseXI	GCAGC	2 cut(s)	217, 508
Bsh1285I	CGRYCG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	180
BsiEI	CGRYCG	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	12
BsiHKCI	CYCGRG	3 cut(s)	5, 40, 196
BsiSI	CCGG	2 cut(s)	177, 378
BslFI	GGGAC	1 cut(s)	394
BslI	CCNNNNNNNGG	2 cut(s)	196, 467
BsmFI	GGGAC	1 cut(s)	394
BsnI	GGCC	1 cut(s)	180
BsoBI	CYCGRG	3 cut(s)	5, 40, 196
Bsp119I	TTCGAA	1 cut(s)	452
Bsp1286I	GDGCHC	2 cut(s)	12, 265
Bsp1407I	TGTACA	1 cut(s)	528
Bsp143I	GATC	4 cut(s)	85, 138, 191, 598
BspACI	CCGC	2 cut(s)	78, 165
BspANI	GGCC	1 cut(s)	180
BspHI	TCATGA	1 cut(s)	289
BspPI	GGATC	2 cut(s)	93, 186
BspT104I	TTCGAA	1 cut(s)	452
BsrFI	RCCGGY	1 cut(s)	176
BsrGI	TGTACA	1 cut(s)	528
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	3 cut(s)	195, 368, 567
BssMI	GATC	4 cut(s)	85, 138, 191, 598
BssNI	GRCGYC	1 cut(s)	365
Bst4CI	ACNGT	4 cut(s)	227, 385, 568, 683
Bst6I	CTCTTC	2 cut(s)	154, 212
BstACI	GRCGYC	1 cut(s)	365
BstAUI	TGTACA	1 cut(s)	528
BstBAI	YACGTR	1 cut(s)	635
BstBI	TTCGAA	1 cut(s)	452
BstC8I	GCNNGC	2 cut(s)	178, 265
BstDSI	CCRYGG	1 cut(s)	567
BstF5I	GGATG	3 cut(s)	118, 301, 493
BstKTI	GATC	4 cut(s)	88, 141, 194, 601
BstMBI	GATC	4 cut(s)	85, 138, 191, 598
BstMCI	CGRYCG	1 cut(s)	141
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 433
BstSCI	CCNGG	1 cut(s)	377
BstV1I	GCAGC	2 cut(s)	217, 508
BstV2I	GAAGAC	2 cut(s)	42, 615
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	180
BtgI	CCRYGG	1 cut(s)	567
BtsCI	GGATG	3 cut(s)	118, 301, 493
Cac8I	GCNNGC	2 cut(s)	178, 265
CciI	TCATGA	1 cut(s)	289
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	1 cut(s)	554
CseI	GACGC	3 cut(s)	373, 433, 629
Csp6I	GTAC	4 cut(s)	303, 529, 587, 666
CviAII	CATG	3 cut(s)	290, 655, 671
CviJI	RGCY	8 cut(s)	10, 22, 180, 186, 242, 263, 377, 457
CviKI_1	RGCY	8 cut(s)	10, 22, 180, 186, 242, 263, 377, 457
CviQI	GTAC	4 cut(s)	303, 529, 587, 666
DpnI	GATC	4 cut(s)	87, 140, 193, 600
DpnII	GATC	4 cut(s)	85, 138, 191, 598
EaeI	YGGCCR	1 cut(s)	178
Eam1104I	CTCTTC	2 cut(s)	154, 212
EarI	CTCTTC	2 cut(s)	154, 212
EciI	GGCGGA	1 cut(s)	180
Ecl136II	GAGCTC	1 cut(s)	10
Eco24I	GRGCYC	2 cut(s)	12, 265
Eco47I	GGWCC	1 cut(s)	554
Eco53kI	GAGCTC	1 cut(s)	10
Eco88I	CYCGRG	3 cut(s)	5, 40, 196
EcoICRI	GAGCTC	1 cut(s)	10
EcoRI	GAATTC	3 cut(s)	143, 463, 574
EcoT38I	GRGCYC	2 cut(s)	12, 265
FaeI	CATG	3 cut(s)	293, 658, 674
FaiI	YATR	7 cut(s)	66, 291, 311, 429, 632, 656, 672
FaqI	GGGAC	1 cut(s)	394
FatI	CATG	3 cut(s)	289, 654, 670
Fnu4HI	GCNGC	2 cut(s)	231, 522
FokI	GGATG	3 cut(s)	125, 308, 500
FriOI	GRGCYC	2 cut(s)	12, 265
Fsp4HI	GCNGC	2 cut(s)	231, 522
GluI	GCNGC	2 cut(s)	231, 522
HaeIII	GGCC	1 cut(s)	180
HapII	CCGG	2 cut(s)	177, 378
HgaI	GACGC	3 cut(s)	373, 433, 629
Hin1I	GRCGYC	1 cut(s)	365
Hin1II	CATG	3 cut(s)	293, 658, 674
HindIII	AAGCTT	1 cut(s)	184
HinfI	GANTC	5 cut(s)	38, 45, 275, 538, 625
HpaII	CCGG	2 cut(s)	177, 378
HphI	GGTGA	3 cut(s)	43, 293, 583
Hpy166II	GTNNAC	2 cut(s)	554, 668
Hpy188I	TCNGA	9 cut(s)	85, 191, 212, 246, 372, 412, 462, 477, 648
Hpy188III	TCNNGA	4 cut(s)	42, 110, 148, 290
Hpy8I	GTNNAC	2 cut(s)	554, 668
Hpy99I	CGWCG	1 cut(s)	427
HpyAV	CCTTC	1 cut(s)	567
HpyCH4III	ACNGT	4 cut(s)	227, 385, 568, 683
HpyCH4IV	ACGT	2 cut(s)	172, 634
HpyCH4V	TGCA	2 cut(s)	233, 524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 433
HpySE526I	ACGT	2 cut(s)	172, 634
Hsp92I	GRCGYC	1 cut(s)	365
Hsp92II	CATG	3 cut(s)	293, 658, 674
KroI	GCCGGC	1 cut(s)	176
KroNI	GCCGGC	1 cut(s)	178
Kzo9I	GATC	4 cut(s)	85, 138, 191, 598
LmnI	GCTCC	1 cut(s)	658
LpnPI	CCDG	5 cut(s)	8, 190, 200, 253, 391
Lsp1109I	GCAGC	2 cut(s)	217, 508
MaeII	ACGT	2 cut(s)	172, 634
MaeIII	GTNAC	2 cut(s)	49, 674
MalI	GATC	4 cut(s)	87, 140, 193, 600
MboI	GATC	4 cut(s)	85, 138, 191, 598
MboII	GAAGA	6 cut(s)	44, 47, 163, 171, 199, 620
MfeI	CAATTG	1 cut(s)	317
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	2 cut(s)	12, 265
MluCI	AATT	9 cut(s)	56, 98, 129, 143, 317, 358, 418, 463, 574
MlyI	GAGTC	1 cut(s)	32
MroNI	GCCGGC	1 cut(s)	176
MroXI	GAANNNNTTC	1 cut(s)	251
MslI	CAYNNNNRTG	1 cut(s)	294
MspI	CCGG	2 cut(s)	177, 378
MspR9I	CCNGG	1 cut(s)	379
MunI	CAATTG	1 cut(s)	317
MwoI	GCNNNNNNNGC	2 cut(s)	239, 433
NaeI	GCCGGC	1 cut(s)	178
NciI	CCSGG	1 cut(s)	379
NdeII	GATC	4 cut(s)	85, 138, 191, 598
NgoMIV	GCCGGC	1 cut(s)	176
NlaIII	CATG	3 cut(s)	293, 658, 674
NmuCI	GTSAC	1 cut(s)	49
NspV	TTCGAA	1 cut(s)	452
PaeR7I	CTCGAG	2 cut(s)	5, 40
PagI	TCATGA	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	1 cut(s)	458
PdiI	GCCGGC	1 cut(s)	178
PdmI	GAANNNNTTC	1 cut(s)	251
PfeI	GAWTC	4 cut(s)	45, 275, 538, 625
PflFI	GACNNNGTC	1 cut(s)	73
PkrI	GCNGC	2 cut(s)	232, 523
Ple19I	CGATCG	1 cut(s)	141
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
Ppu21I	YACGTR	1 cut(s)	635
Psp124BI	GAGCTC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	554
PspXI	VCTCGAGB	1 cut(s)	5
PsuI	RGATCY	1 cut(s)	85
PsyI	GACNNNGTC	1 cut(s)	73
PvuI	CGATCG	1 cut(s)	141
RsaI	GTAC	4 cut(s)	304, 530, 588, 667
RsaNI	GTAC	4 cut(s)	303, 529, 587, 666
RseI	CAYNNNNRTG	1 cut(s)	294
SacI	GAGCTC	1 cut(s)	12
SatI	GCNGC	2 cut(s)	231, 522
Sau3AI	GATC	4 cut(s)	85, 138, 191, 598
Sau96I	GGNCC	1 cut(s)	554
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	379
SduI	GDGCHC	2 cut(s)	12, 265
Sfr274I	CTCGAG	2 cut(s)	5, 40
SfuI	TTCGAA	1 cut(s)	452
SinI	GGWCC	1 cut(s)	554
SlaI	CTCGAG	2 cut(s)	5, 40
SmiMI	CAYNNNNRTG	1 cut(s)	294
SmlI	CTYRAG	3 cut(s)	5, 40, 602
SmoI	CTYRAG	3 cut(s)	5, 40, 602
Sse9I	AATT	9 cut(s)	56, 98, 129, 143, 317, 358, 418, 463, 574
SsiI	CCGC	2 cut(s)	78, 165
SstI	GAGCTC	1 cut(s)	12
StyD4I	CCNGG	1 cut(s)	377
TaaI	ACNGT	4 cut(s)	227, 385, 568, 683
TaiI	ACGT	2 cut(s)	175, 637
TaqI	TCGA	8 cut(s)	6, 12, 41, 141, 422, 452, 505, 548
TasI	AATT	9 cut(s)	56, 98, 129, 143, 317, 358, 418, 463, 574
TatI	WGTACW	2 cut(s)	528, 665
TfiI	GAWTC	4 cut(s)	45, 275, 538, 625
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	2 cut(s)	230, 521
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	278
TspGWI	ACGGA	1 cut(s)	42
Tth111I	GACNNNGTC	1 cut(s)	73
VpaK11BI	GGWCC	1 cut(s)	554
XapI	RAATTY	5 cut(s)	56, 143, 358, 463, 574
XhoI	CTCGAG	2 cut(s)	5, 40
XmnI	GAANNNNTTC	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.