Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004703

Physical Location & Seq

Genomic Coordinates Forward (+)

8347607 .. 8348759

Gene Structure 1153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g07130.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGCTGAAGGTGGAGAATGTAAATCATAAAATGAGGGTGATGGAACTTGAAGGAGAAGTAGATAAGCTGTCGGGTCAGCAAAACCTCCACCAGCGAATTCATCATCATGCAAAAATCAAGGAAGAAAATCACAAGTTAAAAGTACAAAATGAAGAACTTAGCAATAAGCTCCGTAGGACAGAAGTTATTCTTTCACGTGTCAAGGAAGAGCTTGCTTGCTTTCGTGCTTCCTGTGGGAAGAACCCTTGTGTCGATTTTGATGAAGAGCAACGATTGGGTGCAAAACTAAAGGAAACTGAGGAGGAGAAGTTGCAACTAGCACAGAAATTGTTAGGCCTCTGTAGTAGCGTTTTGAAGGCTGCTGGAATAACAAAGCAATCGACACATATAAACCCGTCTACTGCTGAAGAGGCGCTCGAGCAAATCAAGAACAAGATTACTTCAATGGACAGAGAATTGCAGGATTTGAAGTTTAAGAACAAAATAAGCAGTGAAAGAATTCGATTGTCGGAGCTCATGCCACAAACTTCACCATTAAGCTCAAGGAAGGATGAGAATTCTCAAACTCCGAAAAGAACGTCCCAACAAGCTCCGTACTTTTCTGCTTTAGATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0007049 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0032506 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

206

Amino Acids

23.54

Weight (kDa)

8.97

Isoelectric Point (pI)

56.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19050
fragaria_vesca	FvH4_2g07030 FvH4_2g07030 FvH4_2g07030 FvH4_2g07030 FvH4_2g07030 FvH4_2g07030
malus_domestica	MD00G1050200.v1.1 MD10G1088400.v1.1
prunus_persica	Prupe.8G115500_v2.0.a1
pyrus_communis	pycom05g06710 pycom05g06720 pycom10g07100 pycom10g07120 pycom10g07130
rosa_chinensis	RchiOBHm_Chr6g0259391
rosa_laevigata	RLG00000014535
rosa_multiflora	Rmu_sc0012054.1_g000003 Rmu_sc0023331.1_g000001 Rmu_sc0023332.1_g000001 Rmu_sc0037344.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123360 Rroxscaffold_5G00349410 Rroxscaffold_7G00206650
rosa_rugosa	Rorug05G0588700
rosa_samantha	Rh6AG104100 Rh6AG104200 Rh6BG097400 Rh6CG093500 Rh6DG087300
rosa_wichuraiana	Rw6G009000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	398
AcsI	RAATTY	3 cut(s)	96, 498, 556
AcuI	CTGAAG	2 cut(s)	26, 426
AcvI	CACGTG	1 cut(s)	197
AfaI	GTAC	2 cut(s)	144, 596
AflIII	ACRYGT	1 cut(s)	196
AgsI	TTSAA	4 cut(s)	50, 355, 444, 469
AluBI	AGCT	6 cut(s)	67, 169, 211, 514, 540, 590
AluI	AGCT	6 cut(s)	67, 169, 211, 514, 540, 590
Alw21I	GWGCWC	1 cut(s)	516
Ama87I	CYCGRG	1 cut(s)	416
AoxI	GGCC	1 cut(s)	334
ApeKI	GCWGC	1 cut(s)	359
ApoI	RAATTY	3 cut(s)	96, 498, 556
ArsI	GACNNNNNNTTYG	2 cut(s)	563, 595
Asp700I	GAANNNNTTC	2 cut(s)	186, 498
AspLEI	GCGC	1 cut(s)	415
AsuHPI	GGTGA	2 cut(s)	49, 522
AvaI	CYCGRG	1 cut(s)	416
BanII	GRGCYC	1 cut(s)	516
BbrPI	CACGTG	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	516
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	1 cut(s)	34
BfaI	CTAG	1 cut(s)	317
BfmI	CTRYAG	1 cut(s)	340
BfoI	RGCGCY	1 cut(s)	416
BisI	GCNGC	1 cut(s)	360
BlsI	GCNGC	1 cut(s)	361
BmeT110I	CYCGRG	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	526
Bsa29I	ATCGAT	1 cut(s)	613
BsaAI	YACGTR	1 cut(s)	197
BsaXI	ACNNNNNCTCC	2 cut(s)	293, 323
BseCI	ATCGAT	1 cut(s)	613
BseGI	GGATG	1 cut(s)	556
BseMII	CTCAG	1 cut(s)	288
BseRI	GAGGAG	2 cut(s)	314, 317
BseXI	GCAGC	1 cut(s)	346
BshFI	GGCC	1 cut(s)	336
BshVI	ATCGAT	1 cut(s)	613
BsiHKAI	GWGCWC	1 cut(s)	516
BsiHKCI	CYCGRG	1 cut(s)	416
BslFI	GGGAC	1 cut(s)	565
BsmFI	GGGAC	1 cut(s)	565
BsnI	GGCC	1 cut(s)	336
BsoBI	CYCGRG	1 cut(s)	416
Bsp1286I	GDGCHC	1 cut(s)	516
Bsp143I	GATC	1 cut(s)	610
BspANI	GGCC	1 cut(s)	336
BspCNI	CTCAG	1 cut(s)	289
BspDI	ATCGAT	1 cut(s)	613
BspQI	GCTCTTC	2 cut(s)	201, 258
BssMI	GATC	1 cut(s)	610
Bst6I	CTCTTC	3 cut(s)	201, 258, 402
BstBAI	YACGTR	1 cut(s)	197
BstC8I	GCNNGC	2 cut(s)	213, 217
BstDEI	CTNAG	2 cut(s)	158, 297
BstF5I	GGATG	1 cut(s)	556
BstH2I	RGCGCY	1 cut(s)	416
BstHHI	GCGC	1 cut(s)	415
BstKTI	GATC	1 cut(s)	613
BstMBI	GATC	1 cut(s)	610
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstSFI	CTRYAG	1 cut(s)	340
BstV1I	GCAGC	1 cut(s)	346
Bsu15I	ATCGAT	1 cut(s)	613
BsuRI	GGCC	1 cut(s)	336
BsuTUI	ATCGAT	1 cut(s)	613
BtsCI	GGATG	1 cut(s)	556
BtsI	GCAGTG	1 cut(s)	496
BtsIMutI	CAGTG	1 cut(s)	496
Cac8I	GCNNGC	2 cut(s)	213, 217
CfoI	GCGC	1 cut(s)	415
ClaI	ATCGAT	1 cut(s)	613
Csp6I	GTAC	2 cut(s)	143, 595
CviAII	CATG	2 cut(s)	107, 517
CviJI	RGCY	8 cut(s)	67, 169, 211, 336, 359, 514, 540, 590
CviKI_1	RGCY	8 cut(s)	67, 169, 211, 336, 359, 514, 540, 590
CviQI	GTAC	2 cut(s)	143, 595
DdeI	CTNAG	2 cut(s)	158, 297
DpnI	GATC	1 cut(s)	612
DpnII	GATC	1 cut(s)	610
Eam1104I	CTCTTC	3 cut(s)	201, 258, 402
EarI	CTCTTC	3 cut(s)	201, 258, 402
Ecl136II	GAGCTC	1 cut(s)	514
Eco147I	AGGCCT	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	516
Eco53kI	GAGCTC	1 cut(s)	514
Eco57I	CTGAAG	2 cut(s)	26, 426
Eco72I	CACGTG	1 cut(s)	197
Eco88I	CYCGRG	1 cut(s)	416
EcoICRI	GAGCTC	1 cut(s)	514
EcoRI	GAATTC	3 cut(s)	96, 498, 556
EcoT38I	GRGCYC	1 cut(s)	516
FaeI	CATG	2 cut(s)	110, 520
FaiI	YATR	5 cut(s)	27, 108, 387, 389, 518
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FaqI	GGGAC	1 cut(s)	565
FatI	CATG	2 cut(s)	106, 516
FblI	GTMKAC	1 cut(s)	398
Fnu4HI	GCNGC	1 cut(s)	360
FokI	GGATG	1 cut(s)	563
FriOI	GRGCYC	1 cut(s)	516
Fsp4HI	GCNGC	1 cut(s)	360
FspBI	CTAG	1 cut(s)	317
GlaI	GCGC	1 cut(s)	414
GluI	GCNGC	1 cut(s)	360
HaeII	RGCGCY	1 cut(s)	416
HaeIII	GGCC	1 cut(s)	336
HhaI	GCGC	1 cut(s)	415
Hin1II	CATG	2 cut(s)	110, 520
Hin6I	GCGC	1 cut(s)	413
HinP1I	GCGC	1 cut(s)	413
HphI	GGTGA	2 cut(s)	49, 522
Hpy166II	GTNNAC	1 cut(s)	399
Hpy188I	TCNGA	2 cut(s)	511, 570
Hpy188III	TCNNGA	1 cut(s)	427
Hpy8I	GTNNAC	1 cut(s)	399
HpyAV	CCTTC	3 cut(s)	44, 349, 541
HpyCH4IV	ACGT	2 cut(s)	196, 578
HpyCH4V	TGCA	4 cut(s)	110, 281, 313, 460
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	2 cut(s)	158, 297
HpySE526I	ACGT	2 cut(s)	196, 578
Hsp92II	CATG	2 cut(s)	110, 520
HspAI	GCGC	1 cut(s)	413
Kzo9I	GATC	1 cut(s)	610
LguI	GCTCTTC	2 cut(s)	201, 258
LmnI	GCTCC	3 cut(s)	174, 511, 595
LpnPI	CCDG	4 cut(s)	104, 244, 348, 446
Lsp1109I	GCAGC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	317
MaeII	ACGT	2 cut(s)	196, 578
MalI	GATC	1 cut(s)	612
MboI	GATC	1 cut(s)	610
MboII	GAAGA	6 cut(s)	134, 164, 218, 250, 275, 419
MhlI	GDGCHC	1 cut(s)	516
MluCI	AATT	5 cut(s)	96, 326, 455, 498, 556
MmeI	TCCRAC	1 cut(s)	489
MnlI	CCTC	6 cut(s)	27, 95, 292, 295, 347, 403
MroXI	GAANNNNTTC	2 cut(s)	186, 498
MseI	TTAA	3 cut(s)	137, 474, 536
MslI	CAYNNNNRTG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	410
NdeII	GATC	1 cut(s)	610
NlaIII	CATG	2 cut(s)	110, 520
PaeR7I	CTCGAG	1 cut(s)	416
PceI	AGGCCT	1 cut(s)	336
PciSI	GCTCTTC	2 cut(s)	201, 258
PdmI	GAANNNNTTC	2 cut(s)	186, 498
PkrI	GCNGC	1 cut(s)	361
PmaCI	CACGTG	1 cut(s)	197
PmlI	CACGTG	1 cut(s)	197
Ppu21I	YACGTR	1 cut(s)	197
Psp124BI	GAGCTC	1 cut(s)	516
PspCI	CACGTG	1 cut(s)	197
PspXI	VCTCGAGB	1 cut(s)	416
RsaI	GTAC	2 cut(s)	144, 596
RsaNI	GTAC	2 cut(s)	143, 595
RseI	CAYNNNNRTG	1 cut(s)	105
SacI	GAGCTC	1 cut(s)	516
SapI	GCTCTTC	2 cut(s)	201, 258
SaqAI	TTAA	3 cut(s)	137, 474, 536
SatI	GCNGC	1 cut(s)	360
Sau3AI	GATC	1 cut(s)	610
SduI	GDGCHC	1 cut(s)	516
SfcI	CTRYAG	1 cut(s)	340
Sfr274I	CTCGAG	1 cut(s)	416
SlaI	CTCGAG	1 cut(s)	416
SmiMI	CAYNNNNRTG	1 cut(s)	105
SmlI	CTYRAG	2 cut(s)	416, 541
SmoI	CTYRAG	2 cut(s)	416, 541
Sse9I	AATT	5 cut(s)	96, 326, 455, 498, 556
SseBI	AGGCCT	1 cut(s)	336
SspMI	CTAG	1 cut(s)	317
SstI	GAGCTC	1 cut(s)	516
StuI	AGGCCT	1 cut(s)	336
TaiI	ACGT	2 cut(s)	199, 581
TaqI	TCGA	5 cut(s)	252, 380, 417, 502, 613
TasI	AATT	5 cut(s)	96, 326, 455, 498, 556
TatI	WGTACW	1 cut(s)	142
Tru1I	TTAA	3 cut(s)	137, 474, 536
Tru9I	TTAA	3 cut(s)	137, 474, 536
TscAI	CASTG	1 cut(s)	496
TseI	GCWGC	1 cut(s)	359
TspDTI	ATGAA	3 cut(s)	89, 165, 276
TspGWI	ACGGA	2 cut(s)	161, 582
TspRI	CASTG	1 cut(s)	496
XapI	RAATTY	3 cut(s)	96, 498, 556
XhoI	CTCGAG	1 cut(s)	416
XmiI	GTMKAC	1 cut(s)	398
XmnI	GAANNNNTTC	2 cut(s)	186, 498
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.